View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1441_high_38 (Length: 354)

Name: NF1441_high_38
Description: NF1441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1441_high_38
NF1441_high_38
[»] chr5 (6 HSPs)
chr5 (169-338)||(15610747-15610916)
chr5 (257-344)||(15610531-15610618)
chr5 (19-141)||(15610944-15611065)
chr5 (257-344)||(15610636-15610723)
chr5 (263-338)||(15610483-15610561)
chr5 (263-330)||(15610701-15610771)


Alignment Details
Target: chr5 (Bit Score: 162; Significance: 2e-86; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 169 - 338
Target Start/End: Complemental strand, 15610916 - 15610747
Alignment:
Q  169 gagttgcaaaatgtttcttcccagtagaaggggtttactcaagagatgggagaaggaggttcagaaaagggtttcacatgattgtgaagagatcgttgat 268  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15610916 gagttgcaaaatgtttcttcccagtagaaggggtttactcaagagatgtgagaaggaggttcagaaaagggtttcacatgattgtgaagagatcgttgat 15610817  T
Q  269 ctcacaaaatacttatttgatttaagatggggtgttcgtgagactgttgatctcacaaaatacttgtctg 338  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15610816 ctcacaaaatacttatctgatttaagatggggtgttcgtgagactgttgatctcacaaaatacttgtctg 15610747  T

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Target: chr5; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 257 - 344
Target Start/End: Complemental strand, 15610618 - 15610531
Alignment:
Q  257 gagatcgttgatctcacaaaatacttatttgatttaagatggggtgttcgtgagactgttgatctcacaaaatacttgtctgtgctgc 344  Q
    ||||||||||||||||||||||| |||| |||| |||||||||| ||||||||||||||||||||||||||||||||||||| |||||    
T  15610618 gagatcgttgatctcacaaaatatttatctgatctaagatggggagttcgtgagactgttgatctcacaaaatacttgtctgagctgc 15610531  T

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Target: chr5; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 19 - 141
Target Start/End: Complemental strand, 15611065 - 15610944
Alignment:
Q  19 ttttcaaatgtatcatgcacgtatcaagtcatcatacactaccnnnnnnnnnnnnnnntttcaagtcataattgatataaatacttacccgatatcacaa 118  Q
    ||||||||||||||||||||||||||||||||||| |||||||               ||||||||||||||||||||||||||||||||||||||||||    
T  15611065 ttttcaaatgtatcatgcacgtatcaagtcatcattcactaccaaaaaaataaaaaa-tttcaagtcataattgatataaatacttacccgatatcacaa 15610967  T
Q  119 attaactagtagcgccgaaaact 141  Q
    ||||||||||||| |||||||||    
T  15610966 attaactagtagcaccgaaaact 15610944  T

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Target: chr5; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 257 - 344
Target Start/End: Complemental strand, 15610723 - 15610636
Alignment:
Q  257 gagatcgttgatctcacaaaatacttatttgatttaagatggggtgttcgtgagactgttgatctcacaaaatacttgtctgtgctgc 344  Q
    ||||||||||||||||||||||| |||| |||| |||||||||| | ||||||||||||||||||||||||||||||||||| |||||    
T  15610723 gagatcgttgatctcacaaaatatttatctgatctaagatggggagctcgtgagactgttgatctcacaaaatacttgtctgagctgc 15610636  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 263 - 338
Target Start/End: Complemental strand, 15610561 - 15610483
Alignment:
Q  263 gttgatctcacaaaatacttatttgatttaagatggggtgttcgt---gagactgttgatctcacaaaatacttgtctg 338  Q
    |||||||||||||||||||| | |||  |  ||||||||||||||   ||||  ||||| |||||||||||||||||||    
T  15610561 gttgatctcacaaaatacttgtctgagctgcgatggggtgttcgtcgtgagatggttgacctcacaaaatacttgtctg 15610483  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 263 - 330
Target Start/End: Complemental strand, 15610771 - 15610701
Alignment:
Q  263 gttgatctcacaaaatacttatttgatttaagatggggtgt---tcgtgagactgttgatctcacaaaata 330  Q
    |||||||||||||||||||| | |||  || ||||||||||   ||||||||  |||||||||||||||||    
T  15610771 gttgatctcacaaaatacttgtctgagctacgatggggtgttcgtcgtgagatcgttgatctcacaaaata 15610701  T

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