View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1441_high_40 (Length: 350)
Name: NF1441_high_40
Description: NF1441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1441_high_40 |
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Alignment Details
Target: chr7 (Bit Score: 162; Significance: 2e-86; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 156 - 333
Target Start/End: Original strand, 4108064 - 4108240
Alignment:
| Q |
156 |
tatgtacatttatttcatcaatgttcctacatcaattatcatgagtaaaaaattctaccttacataacatcgttgctactataccaacacctcatacagt |
255 |
Q |
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| T |
4108064 |
tatgtacatttatttcatcaatgttcctacatgaattatcatgagtaaaaaattctaccttacataacatcgttgctactataccaacacctcatacagt |
4108163 |
T |
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| Q |
256 |
atttcataaagtatcttatgaaataaaaagcccttataaacgcttatatcgtatctatacattttgtgggcatatagt |
333 |
Q |
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| T |
4108164 |
atttcataaagtatcttatgaaat-aaaagcccttataaacccttatatcgtatctatacattttgtgggcatatagt |
4108240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 11 - 134
Target Start/End: Original strand, 34779396 - 34779519
Alignment:
| Q |
11 |
cagagaacacagccctttgaaattttgctgacagcttttggtaggactgaaattctgagggctgaacctgtttgattgccatcttaaagtgcttcattgt |
110 |
Q |
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| T |
34779396 |
cagagaacacggccctttgaaattttgctgacagcttttggtaggactgaaattctgagggctgaacctgtttgattgccatcttaaagtgcttcattgt |
34779495 |
T |
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| Q |
111 |
tacaacggaagcatcaaagctttc |
134 |
Q |
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| T |
34779496 |
tacaacggaagcatcaaagctttc |
34779519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 13 - 134
Target Start/End: Complemental strand, 34682979 - 34682858
Alignment:
| Q |
13 |
gagaacacagccctttgaaattttgctgacagcttttggtaggactgaaattctgagggctgaacctgtttgattgccatcttaaagtgcttcattgtta |
112 |
Q |
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| T |
34682979 |
gagaacacagccctttgaaattttgctgacaacttttgataggactgagtttctgtgggctgaacttgttcaattgccgtcttaaagtgcttcattgtta |
34682880 |
T |
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| Q |
113 |
caacggaagcatcaaagctttc |
134 |
Q |
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| T |
34682879 |
caacggaagcatcaaagttttc |
34682858 |
T |
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