View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1441_high_42 (Length: 348)
Name: NF1441_high_42
Description: NF1441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1441_high_42 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 17 - 348
Target Start/End: Original strand, 23740651 - 23740982
Alignment:
| Q |
17 |
caccttcgagtctaagctacatctttttgtacgaaaagattatgctaaaggagtaagtcgtcaaagagtagaaggaacaaggttagccttgtttactcca |
116 |
Q |
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| T |
23740651 |
caccttcgagtctaagctacacctttttgtacgaaaagattatgctgaaggagtaagtcgtcaaagagtagaaggaacaaggttagccttgcttactcca |
23740750 |
T |
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| Q |
117 |
agagaaataaggtgtttcaccaaaaaccttctcgcagagtattttaatatattcttacattgtgataccttcatcccttctgtggcaccagttgttagtt |
216 |
Q |
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|||||||||||||||| ||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
23740751 |
agagaaataaggtgttccaccaaaaaccttttcgcagagtattttaatgtattcttacattgtgataccttcatcccttctatggcaccagttgttagtc |
23740850 |
T |
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| Q |
217 |
gatgttgtggaccaaaatggttccaaagagaattcgctaccataaatcccaagtaccaagaagaatctattaaaatttgggaagcttatcttacccacgc |
316 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| || |||||||||||| | | |
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| T |
23740851 |
gatgttgtggaccaaaatggttccaaagagaatttgctaccataaatcccaagtaccaagaagaaactattaaaatttggaaaacttatcttacccccac |
23740950 |
T |
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| Q |
317 |
actcttgtcgactagattggctacttggaaag |
348 |
Q |
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||||||||||||||||||| | |||||||||| |
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| T |
23740951 |
actcttgtcgactagattgaccacttggaaag |
23740982 |
T |
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