View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1441_high_45 (Length: 339)
Name: NF1441_high_45
Description: NF1441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1441_high_45 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 265; Significance: 1e-148; HSPs: 10)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 16 - 328
Target Start/End: Original strand, 27207761 - 27208073
Alignment:
| Q |
16 |
atttctaccaatgttgctggtgggattgcgccagcaccgttgcaaccgagttgaccagaggcacaatcggcagtggcacagctgaactttccattgttgt |
115 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| ||||| ||||||||| |||| ||||||| |
|
|
| T |
27207761 |
atttctaccagtgttgctggtgggattgcgccagcaccgttgcaaccgacttgaccggaggcacaatcggcggtggcgcagctgaaccttccgttgttgt |
27207860 |
T |
|
| Q |
116 |
ctgagcatccagttcggccccaaaatcttcccgaccatggtgatggaaggtccaccgcaattgttgctccaggtcctaactcaaaacccgtcgttgatag |
215 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
27207861 |
cggagcatccagttcggccccaaaatcttcccgaccatggtgatggaaggtccaccgcaattgttgctccaggtcctaactcaaaacccgttgtcgatag |
27207960 |
T |
|
| Q |
216 |
ctgaggtttttggtctccagttaacgttcctggccatacagtgtattcacacctatttgtgaatgtcaccttagctcctccaaccactgcatacaaatgc |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27207961 |
ctgaggtttttggtctccagttaacgttcctggccatacagtgtatgcacacctatttgtgaatgtcaccttagctcctccaaccactgcatacaaatga |
27208060 |
T |
|
| Q |
316 |
aaaatacgttcat |
328 |
Q |
| |
|
||||||||||||| |
|
|
| T |
27208061 |
aaaatacgttcat |
27208073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 16 - 328
Target Start/End: Original strand, 27432841 - 27433153
Alignment:
| Q |
16 |
atttctaccaatgttgctggtgggattgcgccagcaccgttgcaaccgagttgaccagaggcacaatcggcagtggcacagctgaactttccattgttgt |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
27432841 |
atttctaccaatgttgctggtgggattgcgccagcaccgttacaaccgacttgaccagaggcacaatcggcggtggcacaactgaactttccattgttgt |
27432940 |
T |
|
| Q |
116 |
ctgagcatccagttcggccccaaaatcttcccgaccatggtgatggaaggtccaccgcaattgttgctccaggtcctaactcaaaacccgtcgttgatag |
215 |
Q |
| |
|
|||||||| ||||| |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
27432941 |
tggagcatccggttcgtccccaaaatcgacccgaccatggtgatggaaggtccacctcaattgttgctccaggtcctaactcaaaacccgttgttgatag |
27433040 |
T |
|
| Q |
216 |
ctgaggtttttggtctccagttaacgttcctggccatacagtgtattcacacctatttgtgaatgtcaccttagctcctccaaccactgcatacaaatgc |
315 |
Q |
| |
|
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
27433041 |
ctgaggcttttggtctccagttaacgttcccggccatacagtgtattcacacctatttgtgaatgtcaccttagctcctccaaccgctgcatacaaatgc |
27433140 |
T |
|
| Q |
316 |
aaaatacgttcat |
328 |
Q |
| |
|
||||||||||||| |
|
|
| T |
27433141 |
aaaatacgttcat |
27433153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 16 - 308
Target Start/End: Original strand, 27221094 - 27221386
Alignment:
| Q |
16 |
atttctaccaatgttgctggtgggattgcgccagcaccgttgcaaccgagttgaccagaggcacaatcggcagtggcacagctgaactttccattgttgt |
115 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
27221094 |
atttctaccaatgttgctggtgggattgccccagcaccgttgcaaccgacttgaccagaggcacaatcggcggtggcacagctgaactttccattgttgt |
27221193 |
T |
|
| Q |
116 |
ctgagcatccagttcggccccaaaatcttcccgaccatggtgatggaaggtccaccgcaattgttgctccaggtcctaactcaaaacccgtcgttgatag |
215 |
Q |
| |
|
||||||| ||||||||||||||||| |||||||||||||||||||||||||| | ||| || |||||| ||| ||||| ||||| ||||||||||| |
|
|
| T |
27221194 |
tgaagcatccggttcggccccaaaatctacccgaccatggtgatggaaggtccactgaaatagtaactccagatcccaactcgaaacctgtcgttgatag |
27221293 |
T |
|
| Q |
216 |
ctgaggtttttggtctccagttaacgttcctggccatacagtgtattcacacctatttgtgaatgtcaccttagctcctccaaccactgcata |
308 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
27221294 |
ctgaggtttttggtctccggttaacgttcctggccatacagtgtattcacacctatttgtgaaagtcaccttagctcctccaaccactgcata |
27221386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 16 - 308
Target Start/End: Original strand, 27215132 - 27215424
Alignment:
| Q |
16 |
atttctaccaatgttgctggtgggattgcgccagcaccgttgcaaccgagttgaccagaggcacaatcggcagtggcacagctgaactttccattgttgt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
27215132 |
atttctaccaatgttgctggtgggattgcgccagcaccattgcaaccgagttgaccagaggcacaatcggcggtggcacagctgaactttccattgttgt |
27215231 |
T |
|
| Q |
116 |
ctgagcatccagttcggccccaaaatcttcccgaccatggtgatggaaggtccaccgcaattgttgctccaggtcctaactcaaaacccgtcgttgatag |
215 |
Q |
| |
|
||||||| |||||||||||||||| || ||||||||||||||||||||||| | ||| || |||||| ||| ||||| ||||| ||||||||||| |
|
|
| T |
27215232 |
tgaagcatccggttcggccccaaaatcgaccagaccatggtgatggaaggtccactgaaatagtaactccagatcccaactcgaaacctgtcgttgatag |
27215331 |
T |
|
| Q |
216 |
ctgaggtttttggtctccagttaacgttcctggccatacagtgtattcacacctatttgtgaatgtcaccttagctcctccaaccactgcata |
308 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
27215332 |
ctgaggtttttggtctccggttaacgttcctggccatacagtgtattcacacctatttgtgaacgtcaccttagctcctccaaccactgcata |
27215424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 16 - 308
Target Start/End: Complemental strand, 27443769 - 27443477
Alignment:
| Q |
16 |
atttctaccaatgttgctggtgggattgcgccagcaccgttgcaaccgagttgaccagaggcacaatcggcagtggcacagctgaactttccattgttgt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
27443769 |
atttctaccaatgttgctggtgggattgcgccagcaccattgcaaccgagttgaccagaggcacaatcggcggtggcacagctgaactttccattgttgt |
27443670 |
T |
|
| Q |
116 |
ctgagcatccagttcggccccaaaatcttcccgaccatggtgatggaaggtccaccgcaattgttgctccaggtcctaactcaaaacccgtcgttgatag |
215 |
Q |
| |
|
||||||| |||||||||||||||| || ||||||||||||||||||||||| | ||| || |||||| ||| ||||| ||||| ||||||||||| |
|
|
| T |
27443669 |
tgaagcatccggttcggccccaaaatcgaccagaccatggtgatggaaggtccactgaaatagtaactccagatcccaactcgaaacctgtcgttgatag |
27443570 |
T |
|
| Q |
216 |
ctgaggtttttggtctccagttaacgttcctggccatacagtgtattcacacctatttgtgaatgtcaccttagctcctccaaccactgcata |
308 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
27443569 |
ctgaggtttttggtctccggttaacgttcctggccatacagtgtattcacacctatttgtgaacgtcaccttagctcctccaacaactgcata |
27443477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 16 - 312
Target Start/End: Original strand, 27389055 - 27389351
Alignment:
| Q |
16 |
atttctaccaatgttgctggtgggattgcgccagcaccgttgcaaccgagttgaccagaggcacaatcggcagtggcacagctgaactttccattgttgt |
115 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||||| ||||| | | ||||||||| |||||||||||||||||||| | |||| ||| |||||| |
|
|
| T |
27389055 |
atttcaaccaaagttgctggtgggattgcgccagcaccattgcatgcaacttgaccagatgcacaatcggcagtggcacaagtaaactgtccgttgttgg |
27389154 |
T |
|
| Q |
116 |
ctgagcatccagttcggccccaaaatcttcccgaccatggtgatggaaggtccaccgcaattgttgctccaggtcctaactcaaaacccgtcgttgatag |
215 |
Q |
| |
|
||||||||| |||||| ||||||||| || |||||||| || |||| ||| | | | |||||||||||||||||||| ||||| || |||||||| |
|
|
| T |
27389155 |
ttgagcatccggttcgggcccaaaatcgacctgaccatggggaaggaatttccgctgagttcgttgctccaggtcctaactcgaaacctgttgttgatag |
27389254 |
T |
|
| Q |
216 |
ctgaggtttttggtctccagttaacgttcctggccatacagtgtattcacacctatttgtgaatgtcaccttagctcctccaaccactgcatacaaa |
312 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||||||||| |||||| |||| ||||| |||||||| ||| | ||||||| | | ||||||||||| |
|
|
| T |
27389255 |
ctgaggtttttggtctccggttaaggttcctggccatacggtgtatccacatctattcgtgaatgttaccgtggctcctctagcagctgcatacaaa |
27389351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 28 - 312
Target Start/End: Original strand, 27410023 - 27410307
Alignment:
| Q |
28 |
gttgctggtgggattgcgccagcaccgttgcaaccgagttgaccagaggcacaatcggcagtggcacagctgaactttccattgttgtctgagcatccag |
127 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| || | ||||||||| |||||||||| |||||||| || |||||| | |||||| ||||||||| | |
|
|
| T |
27410023 |
gttgctggtgggattgcgccagcaccattgcaccccacttgaccagacccacaatcggctgtggcacaactaaacttttctttgttgattgagcatccgg |
27410122 |
T |
|
| Q |
128 |
ttcggccccaaaatcttcccgaccatggtgatggaaggtccaccgcaattgttgctccaggtcctaactcaaaacccgtcgttgatagctgaggtttttg |
227 |
Q |
| |
|
||| ||||||||| || ||||||| || ||||||| ||||| || |||| |||| ||||||||||| || ||||||| ||||| |||| |
|
|
| T |
27410123 |
ttcttgcccaaaatcgaccagaccatgaagaaggaaggttcaccgagtacgtcactccttgtcccaactcaaaacctgttgttgataattgaggggtttg |
27410222 |
T |
|
| Q |
228 |
gtctccagttaacgttcctggccatacagtgtattcacacctatttgtgaatgtcaccttagctcctccaaccactgcatacaaa |
312 |
Q |
| |
|
|| ||| || ||||||||||||||||| ||| |||| ||||| |||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
27410223 |
agctgtagtaaaggttcctggccatacagtatatccacatctattcgtgaatgtcaccttggctcctccaaccactgcatacaaa |
27410307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 118 - 321
Target Start/End: Original strand, 27455093 - 27455294
Alignment:
| Q |
118 |
gagcatccagttcggccccaaaatcttcccgaccatggtgatggaaggtccaccgcaattgttgctccaggtcctaactcaaaacccgtcgttgatagct |
217 |
Q |
| |
|
|||||||| ||||||| ||||||| || || |||||||||||||||||||| | ||| || ||| || ||| || || |||| |||||| |||||| |
|
|
| T |
27455093 |
gagcatccgattcggcctcaaaatcaacctgatcatggtgatggaaggtccactgaaatagta-ctctagatcccaagtcgaaacttgtcgttcatagct |
27455191 |
T |
|
| Q |
218 |
gaggtttttggtctccagttaacgttcctggccatacagtgtattcacacctatttgtgaatgtcaccttagctcctccaaccactgcatacaaatgcaa |
317 |
Q |
| |
|
|||||||||| |||| |||||||||| || | |||||| | ||||||||| |||| |||||||||||||||||||||||||| |||| || |||||||| |
|
|
| T |
27455192 |
gaggtttttg-tctctagttaacgtttctagtcatacaatttattcacacttattggtgaatgtcaccttagctcctccaactactgattagaaatgcaa |
27455290 |
T |
|
| Q |
318 |
aata |
321 |
Q |
| |
|
|||| |
|
|
| T |
27455291 |
aata |
27455294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 241 - 312
Target Start/End: Complemental strand, 27415821 - 27415750
Alignment:
| Q |
241 |
gttcctggccatacagtgtattcacacctatttgtgaatgtcaccttagctcctccaaccactgcatacaaa |
312 |
Q |
| |
|
||||||||||||||||||||| |||| ||||| |||||||||||||| |||||||||||| ||||| ||||| |
|
|
| T |
27415821 |
gttcctggccatacagtgtatacacatctattcgtgaatgtcaccttggctcctccaacctctgcagacaaa |
27415750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 16 - 92
Target Start/End: Original strand, 27454758 - 27454834
Alignment:
| Q |
16 |
atttctaccaatgttgctggtgggattgcgccagcaccgttgcaaccgagttgaccagaggcacaatcggcagtggc |
92 |
Q |
| |
|
||||||||||||||||||||||||||||| || ||| | ||| |||| | |||||| ||| ||||||||||||||| |
|
|
| T |
27454758 |
atttctaccaatgttgctggtgggattgcacctgcatcattggaacccatttgaccggagatacaatcggcagtggc |
27454834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University