View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1441_high_48 (Length: 328)
Name: NF1441_high_48
Description: NF1441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1441_high_48 |
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Alignment Details
Target: chr3 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 322
Target Start/End: Complemental strand, 21194525 - 21194204
Alignment:
| Q |
1 |
tgcagcactaactgtatcaacaaatgaagcattttccattccaaaaatatttgaacctgacataaatttctgagccaaaaagggttgaaggaggttaaac |
100 |
Q |
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| T |
21194525 |
tgcagcactaactgtatcaacaaatgaagcattttccattccaaaaatatttgaacctgacataaatttctgagccaaaaagggatgaaggaggttaaac |
21194426 |
T |
|
| Q |
101 |
tgtccttgttgtagttgtttttgtgaggaattattgatagcttcttcagtgagatctaatgtgatagttggaaatggagctgaagctgagagtgttgcca |
200 |
Q |
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| T |
21194425 |
tgtccttgttgtagttgtttttgtgaggaattattgatagcttcttcagttagatctaacgtgatagttggaaatggagctgaagctgagagtgttgcca |
21194326 |
T |
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| Q |
201 |
tggtgtgtgaacaagggagtgatccactttctaatattgttggatttattaaaccatctacacttgtcattggtcctgaaagtagcattgatgctgctga |
300 |
Q |
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| T |
21194325 |
tggtgtgtgaacaagggagtgatccactttctaatattgttggatttattaaaccatctacacttgtcattggtcctgaaagtagcattgatgctgctga |
21194226 |
T |
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| Q |
301 |
tgttgttgttgatgcctttgct |
322 |
Q |
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|||||||||||||||| ||||| |
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| T |
21194225 |
tgttgttgttgatgccattgct |
21194204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 202
Target Start/End: Original strand, 8496777 - 8496830
Alignment:
| Q |
149 |
gtgagatctaatgtgatagttggaaatggagctgaagctgagagtgttgccatg |
202 |
Q |
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| T |
8496777 |
gtgagatctaatgtaacagtaggaaatggtgctgaagctgaaagtgtagccatg |
8496830 |
T |
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