View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1441_high_50 (Length: 320)

Name: NF1441_high_50
Description: NF1441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1441_high_50
NF1441_high_50
[»] scaffold0003 (2 HSPs)
scaffold0003 (12-97)||(65549-65633)
scaffold0003 (155-268)||(66044-66154)
[»] chr6 (7 HSPs)
chr6 (12-97)||(27421730-27421814)
chr6 (13-55)||(26651754-26651796)
chr6 (13-55)||(26757722-26757764)
chr6 (155-268)||(27421209-27421319)
chr6 (109-211)||(31394623-31394732)
chr6 (208-267)||(26652138-26652197)
chr6 (208-267)||(26758106-26758165)


Alignment Details
Target: scaffold0003 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 12 - 97
Target Start/End: Original strand, 65549 - 65633
Alignment:
Q  12 gaatattcagatgatcaacttcaaaaaccttagcacaaatttgatgaatatagtttaccaaaataagtaattgaagaatccctcaa 97  Q
    ||||||||| ||||||||||||||||||||||||||| |||||| || | || ||||||| || |||||||| ||| |||||||||    
T  65549 gaatattcatatgatcaacttcaaaaaccttagcacatatttgacgagtgtattttaccataa-aagtaattaaagcatccctcaa 65633  T

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Target: scaffold0003; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 268
Target Start/End: Original strand, 66044 - 66154
Alignment:
Q  155 agattatggctcacatcagtgtcataaaaaatttgtgtctttggtcaaagacacttataagaaagacttcctaaccaggtcgactgtgaggattccctat 254  Q
    |||||||||||||||||||||  | |||||| |||||| |  |||   |||| |||| |||| || |||||||||| | |||| ||||||||||||||||    
T  66044 agattatggctcacatcagtgcta-aaaaaagttgtgtat--ggttggagactcttacaagataggcttcctaaccggctcgattgtgaggattccctat 66140  T
Q  255 gaacattccttgac 268  Q
    | ||||||||||||    
T  66141 ggacattccttgac 66154  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 12 - 97
Target Start/End: Complemental strand, 27421814 - 27421730
Alignment:
Q  12 gaatattcagatgatcaacttcaaaaaccttagcacaaatttgatgaatatagtttaccaaaataagtaattgaagaatccctcaa 97  Q
    ||||||||| ||||||||||||||||||||||||||| |||||| || | || ||||||| || |||||||| ||| |||||||||    
T  27421814 gaatattcatatgatcaacttcaaaaaccttagcacatatttgacgagtgtattttaccataa-aagtaattaaagcatccctcaa 27421730  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 55
Target Start/End: Original strand, 26651754 - 26651796
Alignment:
Q  13 aatattcagatgatcaacttcaaaaaccttagcacaaatttga 55  Q
    |||||||||||||||||||||||||||||| ||||| ||||||    
T  26651754 aatattcagatgatcaacttcaaaaaccttggcacatatttga 26651796  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 55
Target Start/End: Original strand, 26757722 - 26757764
Alignment:
Q  13 aatattcagatgatcaacttcaaaaaccttagcacaaatttga 55  Q
    |||||||||||||||||||||||||||||| ||||| ||||||    
T  26757722 aatattcagatgatcaacttcaaaaaccttggcacatatttga 26757764  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 268
Target Start/End: Complemental strand, 27421319 - 27421209
Alignment:
Q  155 agattatggctcacatcagtgtcataaaaaatttgtgtctttggtcaaagacacttataagaaagacttcctaaccaggtcgactgtgaggattccctat 254  Q
    |||||||||||||||||||||  | |||||| |||||| |  |||   |||| |||| |||| || |||||||||| | |||| ||||||||||||||||    
T  27421319 agattatggctcacatcagtgcta-aaaaaagttgtgtat--ggttggagactcttacaagataggcttcctaaccggctcgattgtgaggattccctat 27421223  T
Q  255 gaacattccttgac 268  Q
    | ||||||||||||    
T  27421222 ggacattccttgac 27421209  T

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Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 109 - 211
Target Start/End: Original strand, 31394623 - 31394732
Alignment:
Q  109 gttgcgaaatttgtgttttcacaatgaattattgac---aacagcgtagagatt----atggctcacatcagtgtcataaaaaatttgtgtctttggtca 201  Q
    |||| ||||||||  |||| ||||||||||||||||    |||| |||||||||    ||||||||||||| ||||||||||||||||||| |||| | |    
T  31394623 gttgtgaaatttgcattttgacaatgaattattgacgatgacagtgtagagattatgcatggctcacatcattgtcataaaaaatttgtgtgtttgctta 31394722  T
Q  202 aagacactta 211  Q
     |||||||||    
T  31394723 gagacactta 31394732  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 208 - 267
Target Start/End: Original strand, 26652138 - 26652197
Alignment:
Q  208 cttataagaaagacttcctaaccaggtcgactgtgaggattccctatgaacattccttga 267  Q
    |||| |||| ||||||| ||||| | |||| ||||||||||||||||| |||||||||||    
T  26652138 cttacaagatagacttcataaccggctcgattgtgaggattccctatggacattccttga 26652197  T

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Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 208 - 267
Target Start/End: Original strand, 26758106 - 26758165
Alignment:
Q  208 cttataagaaagacttcctaaccaggtcgactgtgaggattccctatgaacattccttga 267  Q
    |||| |||| ||||||| ||||| | |||| ||||||||||||||||| |||||||||||    
T  26758106 cttacaagatagacttcataaccggctcgattgtgaggattccctatggacattccttga 26758165  T

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