View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1441_high_52 (Length: 314)

Name: NF1441_high_52
Description: NF1441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1441_high_52
NF1441_high_52
[»] chr1 (1 HSPs)
chr1 (13-305)||(31784074-31784369)


Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 13 - 305
Target Start/End: Complemental strand, 31784369 - 31784074
Alignment:
Q  13 gagacgaggtggcggaggaccgattcgaatggcttcatcggaagatgcgacgtggagggagtttctatcggcgtcgctgtaaacagcgacggtgcgaatt 112  Q
    ||||||||  || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31784369 gagacgagcaggtggaggaccgattcgaatggcttcatcggaagatgcgacgtggagggagtttctatcggcgtcgctgtaaacagcgacggtgcgaatt 31784270  T
Q  113 ccgagtcgttttgcggttcttgtgattctgcatgctatttcgcctctgtttgctattagaattttttctattcgttcttttttctttggttccgatgatg 212  Q
    |||||||  || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31784269 ccgagtctcttagcggttctggtgattctgcatgctatttcgcctctgtttgctattagaattttttctattcgttcttttttctttggttccgatgatg 31784170  T
Q  213 agaactcacgtgcgcgcacgtgacggtttgagtgtgtgaagttggttttgattttggtagtagcatttcgacgg---agtaagaagaataaggaag 305  Q
    |||||||||||||||||||||||| ||||||||| |||| |||||||||||| |||||| ||||||||||||||   |||||||||||||||||||    
T  31784169 agaactcacgtgcgcgcacgtgacagtttgagtgcgtgaggttggttttgatcttggtattagcatttcgacggaatagtaagaagaataaggaag 31784074  T

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