View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1441_high_56 (Length: 305)
Name: NF1441_high_56
Description: NF1441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1441_high_56 |
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Alignment Details
Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 15 - 287
Target Start/End: Complemental strand, 24248560 - 24248290
Alignment:
| Q |
15 |
tattctcttagttgtaattgattttatctttagaaaaaattaagtcgattaccttgttgtgttgttgaggttttatcgaactaattttgtcaattttgtc |
114 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | |||||||||||||||| |
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| T |
24248560 |
tattctcttcgttgtaattgattttatctttagaaaaaattaagttgattaccttgttgtgttgttgaggttttatcgaaatttttttgtcaattttgtc |
24248461 |
T |
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| Q |
115 |
ctaaagaattatatatatcatgttgtgcagcgtaatttattctctttgtgtaatattttcagttctctttgacatgttttttatagttggcttggtattt |
214 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
24248460 |
ctaaagaattatatatatcatgttgtgcagcgtaaattattctc--tgtgtaatattttcagttctctttgacatgttttctatagttggcttggtattt |
24248363 |
T |
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| Q |
215 |
gatcagttgatctatctgaaattgcggatcattttgttcagtttagggttttttaaaatcgtggcgatctata |
287 |
Q |
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|||| |||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |
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| T |
24248362 |
gatcggttgatctatctgaaattgcggatcattttattcagtttagggtttttcaaaatcgtggcgatctata |
24248290 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 163 - 258
Target Start/End: Original strand, 11528084 - 11528178
Alignment:
| Q |
163 |
tgtaatattttcagttctctttgacatgttttttatagttggcttggtatttgatcagttgatctatctgaaattgcggatcattttgttcagttt |
258 |
Q |
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| T |
11528084 |
tgtaatatttatagttctctttggcatcttgtatgcaattggcttggttttt-atcagttgatccatctggaattgcggatcattttgttcagttt |
11528178 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 258
Target Start/End: Complemental strand, 11458581 - 11458527
Alignment:
| Q |
204 |
gcttggtatttgatcagttgatctatctgaaattgcggatcattttgttcagttt |
258 |
Q |
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| T |
11458581 |
gcttggtttttcatctgttgatccatctggaattgcggatcattttgttcagttt |
11458527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 258
Target Start/End: Complemental strand, 1487397 - 1487345
Alignment:
| Q |
206 |
ttggtatttgatcagttgatctatctgaaattgcggatcattttgttcagttt |
258 |
Q |
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||||||||| ||| ||||||||| |||||||||| ||||||||||||||||| |
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| T |
1487397 |
ttggtatttcatcggttgatctagctgaaattgcatatcattttgttcagttt |
1487345 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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