View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1441_high_59 (Length: 299)
Name: NF1441_high_59
Description: NF1441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1441_high_59 |
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Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 18 - 288
Target Start/End: Original strand, 3304980 - 3305260
Alignment:
| Q |
18 |
aataatggcgatatgatgaatgaatattaaaaaagaaaactttagtttaccattccagggaactgatgcttcctctcaacataggtttcatgagtctcag |
117 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
3304980 |
aataatggcgatatgatgaatgaatattaaaaatgaaaactttactttaccattccagggaactgatgcttcctctcaacataagtttcatgagtctcag |
3305079 |
T |
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| Q |
118 |
cgttttcctcatctgcattcagaaacataatttgtcaacataggaatcaaagaagaaacaagc----------nnnnnnnnnnnntagtacccttggtat |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
3305080 |
cgttttcctcatctgcattcagaaacataatttgtcaacataggaatcaaagaagaaacaagcagagagagagagagagagagagtagtacccttggtat |
3305179 |
T |
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| Q |
208 |
gaatgtcatcgtcatcatcttcttcggcgaagagagatgatgtagagaagagagctatgtccatttgttagttcctttctt |
288 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
3305180 |
gaatgtcatcgtcatcatcttcttcggcgaagagagatgatgtggagaagagagctatgtccatttgttagttcctttctt |
3305260 |
T |
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