View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1441_high_62 (Length: 292)
Name: NF1441_high_62
Description: NF1441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1441_high_62 |
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Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 276
Target Start/End: Original strand, 116243 - 116520
Alignment:
| Q |
1 |
acctcttcatgaacatatttatcatata--tatttaagtcagcataaatattaaactatgcgtgtgttgtgggccacatttaggtgatacacattggtct |
98 |
Q |
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|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
116243 |
acctcttcatgaacatatttatcatatacatatttaagtcaacataaatattaaactatgcgtgtgttgtggcccacatttaggtgatacacattggtct |
116342 |
T |
|
| Q |
99 |
atgtttttagactattaataataattgattagttaaactaacaagctcgtgggtaggtaggtgtgtttcatgattgaattaggttagtttattccnnnnn |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
116343 |
atgtttttagactattaataataattgattagttaaactaacaagctcgtgggtaggtaggtgtctttcatgattgaattaggttagtttattccaaaaa |
116442 |
T |
|
| Q |
199 |
nnggaaaacatcctatccaatttcttttagttttgttgttcggctattgcattgccattggtttgattgaaaataaac |
276 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
116443 |
aagaaaaacatcctatccaatttcttttagttttgttgttcggctattgcattgccattggtttgattgaaaataaac |
116520 |
T |
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