View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1441_high_63 (Length: 290)
Name: NF1441_high_63
Description: NF1441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1441_high_63 |
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Alignment Details
Target: chr6 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 16 - 280
Target Start/End: Original strand, 8594490 - 8594754
Alignment:
| Q |
16 |
caaaccgccaacatgaaaagacaaggcaggttgtactttgagttacttatattcaatgacatattttcctctcaattactttaaatcaaggattatatat |
115 |
Q |
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| T |
8594490 |
caaaccgccaacatgaaaagacaaggcaggttgtactttgagttacttatattcaatgacatattttcctctcaattactttaaatcaaggattatatat |
8594589 |
T |
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| Q |
116 |
ggaatttacatagtgaagcatcaaggattaaaaacatgattagcatttgcaagtaagagttattgaataaaaccttgaataaggcaatacaataatacca |
215 |
Q |
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| T |
8594590 |
ggaatttacatagtgaagcatcaaggattaaaaacatgattagcatttgcaagtaagagttattgaataaaaccttgaataaggcaatacaataatacca |
8594689 |
T |
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| Q |
216 |
tgtaattcttaaaaggggattctgtagcactatattgtagtggaatttgaacacatcactatttt |
280 |
Q |
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| T |
8594690 |
tgtaattcttaaaagggtattctgtagcgctatattgtagtggaatttgaacacatcactatttt |
8594754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 96
Target Start/End: Complemental strand, 8579428 - 8579348
Alignment:
| Q |
16 |
caaaccgccaacatgaaaagacaaggcaggttgtactttgagttacttatattcaatgacatattttcctctcaattactt |
96 |
Q |
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| T |
8579428 |
caaaccgtcaacatgaaaaggtaaggcagggtgtactctgagttacttttatgcaatgacatatttttctttcaattactt |
8579348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 96
Target Start/End: Original strand, 19868517 - 19868585
Alignment:
| Q |
28 |
atgaaaagacaaggcaggttgtactttgagttacttatattcaatgacatattttcctctcaattactt |
96 |
Q |
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| T |
19868517 |
atgaaaaggtaaggcagggtgtactttgagttacttttaaacaatgacatatttttccttcaattactt |
19868585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 151 - 213
Target Start/End: Original strand, 19868746 - 19868807
Alignment:
| Q |
151 |
atgattagcatttgcaagtaagagttattgaataaaaccttgaataaggcaatacaataatac |
213 |
Q |
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| T |
19868746 |
atgattagcatttggaagtaaaagtaattgagccaa-ccttgaataaggcaatacaataatac |
19868807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 280
Target Start/End: Original strand, 3015643 - 3015672
Alignment:
| Q |
251 |
tgtagtggaatttgaacacatcactatttt |
280 |
Q |
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| T |
3015643 |
tgtagtggaatttgaacacatcactatttt |
3015672 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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