View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1441_high_64 (Length: 289)
Name: NF1441_high_64
Description: NF1441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1441_high_64 |
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Alignment Details
Target: chr7 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 11 - 266
Target Start/End: Complemental strand, 26937660 - 26937409
Alignment:
| Q |
11 |
cacagaagcttgacatactagctttagaattttcacggcgactgtgcattgggacgcagtattggattgactaacgtgtatccaaaggccaagttgtttt |
110 |
Q |
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| T |
26937660 |
cacagaagcttgacatactagcttcagaattttcacggtgaccgtgcattgggacgcagtattggattgactaacgtgtatccaaagtctaagttgtttt |
26937561 |
T |
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| Q |
111 |
gcgaaagacatgctatttaannnnnnnnnacttggaccatattattaaccatgtcttttcaacatgagaaataaaaacaagtctaccaagtattttgttc |
210 |
Q |
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| T |
26937560 |
gcga----catgctattttttttttttttacttggaccatattattaaccatgtcttttcaacatgagaaataaaaacaagtctaccaagtattttgttc |
26937465 |
T |
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| Q |
211 |
actgttcagacaccttgagtgaaattgtattaattgaagatatatgcatttgtgat |
266 |
Q |
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| T |
26937464 |
actgttcagacaccttgagtgaaattgtattaattgaagatatatgcatttgtgat |
26937409 |
T |
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Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 96
Target Start/End: Original strand, 26135535 - 26135618
Alignment:
| Q |
13 |
cagaagcttgacatactagctttagaattttcacggcgactgtgcattgggacgcagtattggattgactaacgtgtatccaaa |
96 |
Q |
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| T |
26135535 |
cagaagcttgatatactagcttctgaattttcacggcaaccgtgcattgggacgcggtattagattggcaaacgcttatccaaa |
26135618 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 13 - 79
Target Start/End: Original strand, 20791071 - 20791137
Alignment:
| Q |
13 |
cagaagcttgacatactagctttagaattttcacggcgactgtgcattgggacgcagtattggattg |
79 |
Q |
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| T |
20791071 |
cagaagcttgatatactagcttcagaattctcacggcaaccgtgcattgggacgcggtaatggattg |
20791137 |
T |
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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 96
Target Start/End: Original strand, 8917610 - 8917678
Alignment:
| Q |
28 |
ctagctttagaattttcacggcgactgtgcattgggacgcagtattggattgactaacgtgtatccaaa |
96 |
Q |
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| T |
8917610 |
ctagcttcagaattttcacgacgaaagtgcattgggatgcggtattggattgacaaacatgtttccaaa |
8917678 |
T |
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