View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1441_high_66 (Length: 289)
Name: NF1441_high_66
Description: NF1441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1441_high_66 |
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Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 17 - 274
Target Start/End: Complemental strand, 49101184 - 49100926
Alignment:
| Q |
17 |
taaagtttaattggga-gcgaaataaaagttgactaattaaaaattgttccacctaaaaattgaattcagattcttcttgtgaccaattagtcttttagt |
115 |
Q |
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| T |
49101184 |
taaagtttaatcgggaagcgaaataaaagttgactaattaagaattgttccacctaaaaattgaattcagattcttcttgtgaccaattaatcttttagt |
49101085 |
T |
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| Q |
116 |
tgagttcattaaccacttgaatccaattgtttagtatatttaatatgtgtttggttctcagtagaattaattttgatgattgattatgtaaaattgattt |
215 |
Q |
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| T |
49101084 |
tgagttcattaaccacttgaatccaattgtttagtatatttaatatgtgtttggttctcagtagaattaattttgatgattgattatgtaaaattgattt |
49100985 |
T |
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| Q |
216 |
catataaaaagatttttggttaaacacatttagtaaaagtaaatcgaacaattaatttt |
274 |
Q |
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| T |
49100984 |
tatataaaaagatttttgattaaacacatttagtaaaagtaaatcgaacaattaatttt |
49100926 |
T |
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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 90
Target Start/End: Complemental strand, 118849 - 118817
Alignment:
| Q |
58 |
aattgttccacctaaaaattgaattcagattct |
90 |
Q |
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| T |
118849 |
aattgttccacctataaattgaattcagattct |
118817 |
T |
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