View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1441_high_70 (Length: 281)
Name: NF1441_high_70
Description: NF1441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1441_high_70 |
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Alignment Details
Target: chr8 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 4 - 248
Target Start/End: Original strand, 24940263 - 24940507
Alignment:
| Q |
4 |
atagcgaacgtaatgcaattagaaatcaagaattgcgacgttttaagtcacgttacttaagaatgaaatttagaatagcgcatagatgcaggaacgattg |
103 |
Q |
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| T |
24940263 |
atagcgaatgcaatacaattaaaaatcaagaattatgacgtttcaagtcatgttacttaagaacgaagtttagaatagcgcgtagttgcaggaacgattg |
24940362 |
T |
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| Q |
104 |
cggttgtactgcaattttttaatattacgaagaatcacagtcaaatgtgaatatgatcgatttggtcaagcataaattgctcttgtgttgtgattcaact |
203 |
Q |
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||||||||||||||||||| ||||||| |||||||||||||||||| |||||||||||||||||| |||||||||||||||||| ||||||||||||||| |
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| T |
24940363 |
cggttgtactgcaatttttgaatattatgaagaatcacagtcaaatatgaatatgatcgatttggccaagcataaattgctcttttgttgtgattcaact |
24940462 |
T |
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| Q |
204 |
aatttctcagtattgcattttgttcaatgtacatattatatactt |
248 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
24940463 |
aatttctgagtattgcattttgttcaatgtacatattatatactt |
24940507 |
T |
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