View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1441_high_73 (Length: 273)
Name: NF1441_high_73
Description: NF1441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1441_high_73 |
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Alignment Details
Target: chr8 (Bit Score: 168; Significance: 4e-90; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 51 - 262
Target Start/End: Original strand, 33095122 - 33095324
Alignment:
| Q |
51 |
tactcgtttagggaccgttctctataggagacattaaagaaatagatttgctaaatttgataaatttgcttatgatcaggaattgagtagtaatatagct |
150 |
Q |
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| T |
33095122 |
tactcgtttagggaccgttctctataggagacattaaagaaatagatttgctaaa---------tttgcttatgatcaggaattgagtagtaatatagct |
33095212 |
T |
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| Q |
151 |
gcaattgaaagaatatataactgcaattcaagtgtttatgtgttgtaatcatgtcagagacattaaagaaagaatatataaatgcaaatgaagtgttatt |
250 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
33095213 |
gcaattgaaagaatatataactgcaattgaagtgtttatgtgttgtaatcatgtcagagacattaaagaaagaatatataaatgcaaatgaagggttatt |
33095312 |
T |
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| Q |
251 |
ttattggttcat |
262 |
Q |
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||||||| |||| |
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| T |
33095313 |
ttattggctcat |
33095324 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 169 - 262
Target Start/End: Original strand, 33080665 - 33080758
Alignment:
| Q |
169 |
aactgcaattcaagtgtttatgtgttgtaatcatgtcagagacattaaagaaagaatatataaatgcaaatgaagtgttattttattggttcat |
262 |
Q |
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| T |
33080665 |
aactgcaattgaagtgttaatttgttgtaatcatgttggagacattaaagaaagaatatataaatgcaaatgaggtgttaatttattggctcat |
33080758 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 139 - 184
Target Start/End: Original strand, 33080485 - 33080530
Alignment:
| Q |
139 |
agtaatatagctgcaattgaaagaatatataactgcaattcaagtg |
184 |
Q |
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| T |
33080485 |
agtaacatagctgcaattgaaagaatatataactgcaattgaagtg |
33080530 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 51
Target Start/End: Original strand, 29680400 - 29680435
Alignment:
| Q |
16 |
ctagaatccctcttgaattactcgtttagggaccgt |
51 |
Q |
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| T |
29680400 |
ctagaatccctcttgaagtactcgtttagggaccgt |
29680435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 142 - 221
Target Start/End: Original strand, 22764648 - 22764727
Alignment:
| Q |
142 |
aatatagctgcaattgaaagaatatataactgcaattcaagtgtttatgtgttgtaatcatgtcagagacattaaagaaa |
221 |
Q |
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| T |
22764648 |
aatatagctgcaattgaaagaatatataactgcaattgaagtgttaatttgtggaaatcatgcctgagacattaaagaaa |
22764727 |
T |
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