View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1441_high_79 (Length: 267)

Name: NF1441_high_79
Description: NF1441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1441_high_79
NF1441_high_79
[»] chr1 (2 HSPs)
chr1 (1-267)||(13407783-13408049)
chr1 (32-123)||(19173774-19173868)


Alignment Details
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 267
Target Start/End: Complemental strand, 13408049 - 13407783
Alignment:
Q  1 caattaaaactacttgaaattaatcatataaataaatgacactttccaaattgtgaaagtcaatacctactcaaaataatattcaaacttagaatcaatg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13408049 caattaaaactacttgaaattaatcatataaataaatgacactttccaaattgtgaaagtcaatacctactcaaaataatattcaaacttagaatcaatg 13407950  T
Q  101 acttaaaataatatccaaacatagaatttttcaactcatagatactgatggttacttataagttataactattgaggaagtgtgttcatcnnnnnnnnnn 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||              
T  13407949 acttaaaataatatccaaacatagaatttttcaactcatagatactgatggttacttataagttataactattgaggaagtgtgttcatctatatctata 13407850  T
Q  201 nnnnnnnnnnnnngacgagaataaaaactagagaaagtgcaatactcaaagttaagatgagttccaa 267  Q
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13407849 tctatatatatatgacgagaataaaaactagagaaagtgcaatactcaaagttaagatgagttccaa 13407783  T

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Target: chr1; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 32 - 123
Target Start/End: Original strand, 19173774 - 19173868
Alignment:
Q  32 ataaatgacactttccaaattgtgaaagtcaatacctactcaaaataatattcaaacttagaatcaa-tgactt--aaaataatatccaaacata 123  Q
    |||||||||||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||  |||||||||||||||||||    
T  19173774 ataaatgacactttccaatttgtgaaagtcaatacctgctccaaataatattcaaacttagaatcaattgacttaaaaaataatatccaaacata 19173868  T

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