View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1441_high_92 (Length: 252)

Name: NF1441_high_92
Description: NF1441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1441_high_92
NF1441_high_92
[»] chr5 (1 HSPs)
chr5 (10-136)||(15268899-15269024)
[»] chr6 (1 HSPs)
chr6 (165-227)||(7771019-7771081)
[»] chr8 (1 HSPs)
chr8 (165-220)||(15823582-15823637)
[»] chr4 (1 HSPs)
chr4 (163-223)||(10573699-10573759)


Alignment Details
Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 10 - 136
Target Start/End: Original strand, 15268899 - 15269024
Alignment:
Q  10 tagcataggcatcaaaattattattttgacggaacattaattactgtgttcttggnnnnnnnnnttgtttatctcttctattaattattctatttannnn 109  Q
    ||||| ||||||||||||||||||||||||||||||||||||||  |||||||||         ||||||||||||||||||||  ||||||||||        
T  15268899 tagcagaggcatcaaaattattattttgacggaacattaattaccatgttcttgg-aaaaaaaattgtttatctcttctattaaccattctatttatttt 15268997  T
Q  110 nnnnaaaatgtttttgctctcccctct 136  Q
        |||||||||||||||||||||||    
T  15268998 ttgtaaaatgtttttgctctcccctct 15269024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 165 - 227
Target Start/End: Original strand, 7771019 - 7771081
Alignment:
Q  165 taaaaagatattcttaatatgtagaatgaaattctatcatccagtcattaatttgatccgata 227  Q
    |||||| |||||||| |||| |||| |||||||| ||||||||| ||||||||||||||||||    
T  7771019 taaaaatatattcttgatatatagactgaaattccatcatccagccattaatttgatccgata 7771081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 165 - 220
Target Start/End: Original strand, 15823582 - 15823637
Alignment:
Q  165 taaaaagatattcttaatatgtagaatgaaattctatcatccagtcattaatttga 220  Q
    |||||||||||||||||| | | ||||||||||| ||||||||| |||||||||||    
T  15823582 taaaaagatattcttaatctatggaatgaaattccatcatccagccattaatttga 15823637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 223
Target Start/End: Original strand, 10573699 - 10573759
Alignment:
Q  163 cataaaaagatattcttaatatgtagaatgaaattctatcatccagtcattaatttgatcc 223  Q
    ||||||||||||| |||||||| | |||||||||| |||||  ||| ||||||||||||||    
T  10573699 cataaaaagatatgcttaatatatggaatgaaattatatcactcagccattaatttgatcc 10573759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University