View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1441_high_95 (Length: 250)
Name: NF1441_high_95
Description: NF1441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1441_high_95 |
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Alignment Details
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 41310558 - 41310317
Alignment:
| Q |
1 |
ctgaatttttagctaaaagataacacaacaacttgttctttaacactgatttttgcagcatctacaaataatcaacaatattatcaatagattctaatct |
100 |
Q |
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| T |
41310558 |
ctgaatttttagctaaaagataacacaacaacttgttctttaacactgatttttgcagcatctacaaataatcaacaatattatgaatagattctaatct |
41310459 |
T |
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| Q |
101 |
tgactgggtttgaggaaaagattgacttagaacctggatcgattcacggtttaagttgctccggtgctgtcctgtgttaggtgctgcggtgtactgcagn |
200 |
Q |
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| T |
41310458 |
tgactgggtttgaggaaaagattgacttagaacctggatcgattcacggtttaagttgctccggtgctgtcctgtgttgggtgctgcggtgtactgcagt |
41310359 |
T |
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| Q |
201 |
nnnnnngctgccggtattctgtcagtttttctgttctctgct |
242 |
Q |
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| T |
41310358 |
ttctttgctgccggtattctgtcagttttgctgttctctgct |
41310317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 6 - 144
Target Start/End: Original strand, 9562043 - 9562186
Alignment:
| Q |
6 |
tttttagctaaaagataacacaacaacttgttctttaacactgatttttgcagcatctacaaataatcaacaatattat-ca-atagattctaatcttga |
103 |
Q |
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||||||||| ||||||||| ||| |||||||||||| |||||||||| ||||||||||||||||||||||||||||||| || ||| |||||||| |||| |
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| T |
9562043 |
tttttagctgaaagataacgcaataacttgttctttgacactgatttctgcagcatctacaaataatcaacaatattatgcatatatattctaattttga |
9562142 |
T |
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| Q |
104 |
ctgggtttgaggaaaag---attgacttagaacctggatcgatt |
144 |
Q |
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| T |
9562143 |
cttggtttgaggaaaagattattgacttagaacctggatcgatt |
9562186 |
T |
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