View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1441_high_96 (Length: 250)
Name: NF1441_high_96
Description: NF1441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1441_high_96 |
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Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 38451608 - 38451368
Alignment:
| Q |
1 |
ttagatggtcaagtatacatgcaacagtggggtgaaatggggaccaagcttccaacagacatacccccatcaccaaaacacacctccttgaccgccttga |
100 |
Q |
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| T |
38451608 |
ttagatggtcaagtatacatgcaacagtggggtgaaatggggaccaagcttccaacagacatacccccatcaccaaaacacacctccttgaccgccttga |
38451509 |
T |
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| Q |
101 |
attttcacaatttttaacttttgcattaaagtttgctctcctctaatgtttcaatcattgctacaaaatcctaaatttgttttcatcaccaatccttttc |
200 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
38451508 |
attttcacaatttttaacttttgcataaaagtttgctctcctctaatgtttcaatcattgctacaaaatcctaaatttgttttcatcaccaatacttttc |
38451409 |
T |
|
| Q |
201 |
attttcgttttaaaaaatcaatatcaagaccacacctatgc |
241 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
38451408 |
attttcgttttaaaaaatcaatatcaagaccacacctatgc |
38451368 |
T |
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