View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1441_high_99 (Length: 249)
Name: NF1441_high_99
Description: NF1441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1441_high_99 |
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| [»] scaffold0023 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 11 - 222
Target Start/End: Original strand, 10815413 - 10815624
Alignment:
| Q |
11 |
cacagagagtcattaaattcatgagtaaaagaaaagataatagtccatatccaaaatcaaaacaatcgatgggaattagaatgaaaacacctgtttttct |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10815413 |
cacagagagtcattaaattcatgagtaaaagaaaagataatagcccatatccaaaatcaaaacaatcgatgggaattagaatgaaaacacctgtttttct |
10815512 |
T |
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| Q |
111 |
ccaccggcggtgttgctgattaggacttgaagccattgggataatttattgcacttctcaaacaaaagtttctnnnnnnnttttagcttccaaaatttcg |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| || ||| |||||| |||||| |
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| T |
10815513 |
ccaccggcggtgttgctgattaggacttgaagccattgggataatttatcgcacttctcaaacaaacgtttctaaaaaacttgtagattccaatatttcg |
10815612 |
T |
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| Q |
211 |
aagacaatgatt |
222 |
Q |
| |
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|||||||||||| |
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| T |
10815613 |
aagacaatgatt |
10815624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 151; Significance: 5e-80; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 11 - 222
Target Start/End: Original strand, 13311109 - 13311320
Alignment:
| Q |
11 |
cacagagagtcattaaattcatgagtaaaagaaaagataatagtccatatccaaaatcaaaacaatcgatgggaattagaatgaaaacacctgtttttct |
110 |
Q |
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||||||||||||| |||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13311109 |
cacagagagtcatgaaattcatgagtaaaagaaaagatgatagcccatatccaaaatcaaaacaatcgatgggaattagaatgaaaacacctgtttttct |
13311208 |
T |
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| Q |
111 |
ccaccggcggtgttgctgattaggacttgaagccattgggataatttattgcacttctcaaacaaaagtttctnnnnnnnttttagcttccaaaatttcg |
210 |
Q |
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| T |
13311209 |
ccaccggcggtgttgctgattaggacttgaagccattgggataattaatcgcacttctcaaacaaacgtttctaaaaaacttgtagcttccaatatttca |
13311308 |
T |
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| Q |
211 |
aagacaatgatt |
222 |
Q |
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||||||| |||| |
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| T |
13311309 |
aagacaacgatt |
13311320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 11 - 222
Target Start/End: Complemental strand, 23693393 - 23693179
Alignment:
| Q |
11 |
cacagagagtcattaaattcatgagtaaaagaaaagataatagtccatatccaaaatcaaaacaatcgatgggaattagaatgaaaacacctg---tttt |
107 |
Q |
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||||||||||||||||||||| |||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
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| T |
23693393 |
cacagagagtcattaaattcaagagtaaaagaaaagatgatagcccatatccaaaatcaaaacaatcgatgggaattagaatgaaaacgcctgtattttt |
23693294 |
T |
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| Q |
108 |
tctccaccggcggtgttgctgattaggacttgaagccattgggataatttattgcacttctcaaacaaaagtttctnnnnnnnttttagcttccaaaatt |
207 |
Q |
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| | ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| || |||||||||| ||| |
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| T |
23693293 |
tttttggcggcggtgttgctgattaggacttgaagccattgggataatttatcgcacttctcaaacaaacgtttctaaaaaacttgtagcttccaatatt |
23693194 |
T |
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| Q |
208 |
tcgaagacaatgatt |
222 |
Q |
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|||||||||| |||| |
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| T |
23693193 |
tcgaagacaacgatt |
23693179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0023 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: scaffold0023
Description:
Target: scaffold0023; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 11 - 222
Target Start/End: Complemental strand, 147375 - 147159
Alignment:
| Q |
11 |
cacagagagtcattaaattcatgagtaaaagaaaagataatagtccatatccaaaatcaaaacaatcgatgggaattagaatgaaaacacctgt----tt |
106 |
Q |
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||||||||||||||||||||| |||||||||||||||| |||| |||||||||||||||||||||| ||||||||||||||||||||||||||| || |
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| T |
147375 |
cacagagagtcattaaattcaagagtaaaagaaaagatgatagcccatatccaaaatcaaaacaattgatgggaattagaatgaaaacacctgttttttt |
147276 |
T |
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| Q |
107 |
ttctccaccggcggtgttgctgattaggacttgaagccattgggataatttattgcacttctcaaacaaaagtttctnnnnnnnttt-tagcttccaaaa |
205 |
Q |
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|| | |||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| ||| |||||||||| | |
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| T |
147275 |
tttttttgcggcggtgttactgattaggacttgaagccattgggataatttatcgcacttctcaaacaaacgtttctaaaaaactttgtagcttccaata |
147176 |
T |
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| Q |
206 |
tttcgaagacaatgatt |
222 |
Q |
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|||||||||||| |||| |
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| T |
147175 |
tttcgaagacaacgatt |
147159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 11 - 102
Target Start/End: Complemental strand, 20511888 - 20511796
Alignment:
| Q |
11 |
cacagagagtcattaaattcatgagtaaaagaaaagataatagtccatatccaaaatcaaaacaatcgatgggaattagaat-gaaaacacct |
102 |
Q |
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||||||||||||||||||||| |||||| ||||||||| |||| |||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
20511888 |
cacagagagtcattaaattcaagagtaagagaaaagatgatagcccatatccaaaatcaaaacaatcgatgggaattagaatagaaaacacct |
20511796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 118 - 183
Target Start/End: Complemental strand, 20443062 - 20442997
Alignment:
| Q |
118 |
cggtgttgctgattaggacttgaagccattgggataatttattgcacttctcaaacaaaagtttct |
183 |
Q |
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| T |
20443062 |
cggtgttgctgattaggacatgaagccattgggataatttatcgcacttctcaaacaaaagtttct |
20442997 |
T |
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