View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1441_low_1 (Length: 661)
Name: NF1441_low_1
Description: NF1441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1441_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 435; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 167 - 652
Target Start/End: Original strand, 2451581 - 2452075
Alignment:
| Q |
167 |
tttgaaagaatgtgacaatttttgggacaatggcata---------cataaaatgtttgttagagaaaaaatatttgttactaaattaacaaccatataa |
257 |
Q |
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| T |
2451581 |
tttgaaagaatgtgacaatttttgggacaatggcataaaaatattacataaaatgtttgttagagaaaaaatatttgttattaaattaacaaccatataa |
2451680 |
T |
|
| Q |
258 |
aaataattaattgtatttggtgatttgaaatgatagttatatatatttagagacaagtctttattttccttgtacttagggaaagagtagtttgttactg |
357 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
2451681 |
aaataattaattgtatttggtgatttgaaatgatagttatatatatttagagacaagtctctattttccttgtacttagggaaagagtagtttgttactg |
2451780 |
T |
|
| Q |
358 |
tctattagtgtccaccaaacgcatagagtattatatgtctttccttcaaagttaagcataaacaaaattcactaattgtactcaaaatctatgatggcac |
457 |
Q |
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||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2451781 |
tctatgagtgtccaccaaacgaatagagtattatatgtctttccttcaaagttaagcataaacaaaattcactaattgtactcaaaatctatgatggcac |
2451880 |
T |
|
| Q |
458 |
attacattatattacactcttcctctgaagacatcatcacaaaatacaaatcttttgcataaagataaagctttacaaaccaaataaaccatccactagt |
557 |
Q |
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| T |
2451881 |
attacattagattacactcttcctctgaagacatcattacaaaatacaaatcgtttgcataaagataaagctttacaaaccaaataaaccatccactagt |
2451980 |
T |
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| Q |
558 |
gcaattctccatctaccactgcaccatcatgtttcttgtttatgtcttccttctccaaatgtgtttccttcctcacattggtttttcatctcact |
652 |
Q |
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| T |
2451981 |
gcaattctccatctaccactgcaccatcatgtttcttgtttatgtcttccttctccaaatgtgtttccttcctcacattggtttttcatctcact |
2452075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 42 - 163
Target Start/End: Original strand, 2451423 - 2451544
Alignment:
| Q |
42 |
gcaggatgttcaagttaggaataacaagattcaatgttatgctgatattgacaggttttcttcattctccactttttcctcttattataagnnnnnnngt |
141 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
2451423 |
gcaggatgttcaagttaggaataacaagattcagtgttatgctgatattgacaggttttcttcattctccactttttcctcttattataagtttttttgt |
2451522 |
T |
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| Q |
142 |
gttaattttcacaaaaataagt |
163 |
Q |
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|||||||||||||||||||||| |
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| T |
2451523 |
gttaattttcacaaaaataagt |
2451544 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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