View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1441_low_10 (Length: 495)
Name: NF1441_low_10
Description: NF1441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1441_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 13 - 479
Target Start/End: Complemental strand, 45102108 - 45101650
Alignment:
| Q |
13 |
taggtctgaccgtagtattcaaaatggagtagatgttaagcaaacatgttgaactataatctcttatatataatgtcatgaatcagagtacgaatctcta |
112 |
Q |
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| T |
45102108 |
taggtctgactgtagtattcaaaatggagtagatgttaaacaaacatgttgaactataatctcttatatacaatgtcatgaatcagagtacgaatctcta |
45102009 |
T |
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| Q |
113 |
ttgagagagatgtctatatatcatatttgatagtgtctcgaataaaattatctctaataaaaggaatgaaatcatattctcaactttaa--nnnnnnnat |
210 |
Q |
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| T |
45102008 |
ttgagagagatgtctatatatcatatttgatagtgtcttgaataaaattatctctaataaaaggaatgaaatcatattctcaactttaatttttttttat |
45101909 |
T |
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| Q |
211 |
cacatttacgtatttggcacatttgctctcgtgggatcatgattatatgtctgaattttaatacaattttaatttattttaaaataaaaaagtattgaac |
310 |
Q |
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| T |
45101908 |
cgcatttacgtatttggcacatttgctctcgtgggatcatgattatatgtctggattttaatacaattttaatttattttaaaataaaaaagtattgaac |
45101809 |
T |
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| Q |
311 |
ttgattgttaaactgtctgtttttcatccaatgacctgaatgcgtgccgaatacgtgagtaccacaattttttaactatcgggaatcaggatttccgata |
410 |
Q |
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| T |
45101808 |
tt-----------agcctgattttgatccaatgacctgaatgcgtgccaaatacgtgagtaccacaattttttaactaccgggaatcaggagtcccgata |
45101720 |
T |
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| Q |
411 |
ccatcttttggaggtaagctttttcatatatttca-caaaaacttgaaggataaagttatcaatcgtatt |
479 |
Q |
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| T |
45101719 |
ccatcttttggaggtaagctttttcatatatttcaccaaaaacttgaaggataaagttatcaatcatatt |
45101650 |
T |
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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 265 - 313
Target Start/End: Complemental strand, 10867648 - 10867601
Alignment:
| Q |
265 |
attttaatacaattttaatttattttaaaataaaaaagtattgaacttg |
313 |
Q |
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| T |
10867648 |
attttaatacaattttaattatttttaaaataaaaaa-tattgaacttg |
10867601 |
T |
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