View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1441_low_100 (Length: 250)
Name: NF1441_low_100
Description: NF1441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1441_low_100 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 158; Significance: 3e-84; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 89 - 250
Target Start/End: Original strand, 37707120 - 37707281
Alignment:
| Q |
89 |
aataagatagttacaagatcttgcggatgtcagaggaagaagatttgagatataaagctgaattcaaagctcataaccttcgggaatagccagaacctgc |
188 |
Q |
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| T |
37707120 |
aataagatagttacaagatcttgcggatgtcagaggaagaagatttgagatataaagctgaattcaaagctcataaccttcgggaatagccagaacctgc |
37707219 |
T |
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| Q |
189 |
acatttcttgcagagtaccaatcctacaagatgtgaattagacacgggtattagtagattat |
250 |
Q |
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| T |
37707220 |
acatttcttgcagagtaccaatcctacaaaatgtgaattagacacgggtattagtagattat |
37707281 |
T |
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Target: chr5; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 82 - 250
Target Start/End: Original strand, 37442892 - 37443060
Alignment:
| Q |
82 |
tatgaacaataagatagttacaagatcttgcggatgtcagaggaagaagatttgagatataaagctgaattcaaagctcataaccttcgggaatagccag |
181 |
Q |
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||||||||||||||||||||||||||||||| |||||||| |||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
37442892 |
tatgaacaataagatagttacaagatcttgcagatgtcaggggaagaagatttaagctataaggctgaattcaaagctcataaccttcgggaatagccag |
37442991 |
T |
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| Q |
182 |
aacctgcacatttcttgcagagtaccaatcctacaagatgtgaattagacacgggtattagtagattat |
250 |
Q |
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| T |
37442992 |
aacctgcacatttcttgcagagtaccaatcctacaaaatgtgaattagacacgggtattagtagattat |
37443060 |
T |
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