View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1441_low_104 (Length: 249)
Name: NF1441_low_104
Description: NF1441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1441_low_104 |
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| [»] scaffold0024 (2 HSPs) |
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| [»] scaffold0013 (1 HSPs) |
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| [»] scaffold1343 (1 HSPs) |
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Alignment Details
Target: scaffold0024 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 4 - 225
Target Start/End: Complemental strand, 116818 - 116600
Alignment:
| Q |
4 |
agtgaacttaaaacaacgacgaatatggcgaagataacaagtgatttgcatgaagcaccatattttgtaacaagtttgagtccttctccatcggtaccag |
103 |
Q |
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| T |
116818 |
agtgaacttaaaacaacgacgaatatggcaaagataacaagtgatttgcatgaagcaccgtattttgtaacaagtttgagtccttctccatcggtaccag |
116719 |
T |
|
| Q |
104 |
gtgatgtctcgtccagctgaagagccggactagttagaaagccatatgccatgcctgtgaaagctgctcccgagtgtgacctacaaatgaatcaccacca |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
116718 |
gtgatgtctcgtccagctgaagagccggactagttagaaagccatatgccatgcctgtgaaagctgctcccgagtgtgacctacaaatgaat---aacca |
116622 |
T |
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| Q |
204 |
cctgataaatattcatattttt |
225 |
Q |
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||| |||||||||||||||||| |
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| T |
116621 |
cctaataaatattcatattttt |
116600 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 69
Target Start/End: Complemental strand, 120669 - 120607
Alignment:
| Q |
6 |
tgaacttaaaacaacgacgaatatggcgaagataacaagtgatttgcatgaagcaccatatttt |
69 |
Q |
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| T |
120669 |
tgaacttaaaacaactacaaat-tctcgaagataacaagtgatttgcatgaagaaccatatttt |
120607 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 8 - 69
Target Start/End: Complemental strand, 245839 - 245778
Alignment:
| Q |
8 |
aacttaaaacaacgacgaatatggcgaagataacaagtgatttgcatgaagcaccatatttt |
69 |
Q |
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| T |
245839 |
aacttaaaacaactacaaataccgcgaagataacaagtgatttgcatgaagcaccgtatttt |
245778 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1343 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold1343
Description:
Target: scaffold1343; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 69
Target Start/End: Complemental strand, 1262 - 1199
Alignment:
| Q |
6 |
tgaacttaaaacaacgacgaatatggcgaagataacaagtgatttgcatgaagcaccatatttt |
69 |
Q |
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||||||||| ||||| || |||| |||||||| ||||||||||||||||||||||| |||||| |
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| T |
1262 |
tgaacttaagacaactacaaataccgcgaagattacaagtgatttgcatgaagcaccgtatttt |
1199 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 69
Target Start/End: Complemental strand, 14505018 - 14504955
Alignment:
| Q |
6 |
tgaacttaaaacaacgacgaatatggcgaagataacaagtgatttgcatgaagcaccatatttt |
69 |
Q |
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||||||||| ||||| || |||| |||||||| ||||||||||||||||||||||| |||||| |
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| T |
14505018 |
tgaacttaagacaactacaaataccgcgaagattacaagtgatttgcatgaagcaccgtatttt |
14504955 |
T |
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