View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1441_low_106 (Length: 248)
Name: NF1441_low_106
Description: NF1441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1441_low_106 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 159; Significance: 9e-85; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 7683283 - 7683513
Alignment:
| Q |
1 |
ctcgtcatgtttctgattttgaaatttgctttt-atgcaagttgcatttccctttcctatgnnnnnnnnnattaaattttaaataaacaagtttgtagtc |
99 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
7683283 |
ctcgtcatgtttttgattttgaaattttctttttatgcaagttgcatttccctttcctatgttttgtt--attaaattttaaataaacaagtttgtagtc |
7683380 |
T |
|
| Q |
100 |
aggcacgcatccactcatgtggtattggggacaattgcctccactaatgtttatattatatgtgttgaagtttgcttttacgcaagttgcattccccttt |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
7683381 |
aggcacgcatccactcatgtggtattgggg-caattgcctccaccaatgtttat-ttatatgtgttgaagtttgctttttcgcaagttgcattccccttt |
7683478 |
T |
|
| Q |
200 |
cctatgttttattattaaattttaaataaacgggt |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| |
|
|
| T |
7683479 |
cctatgttttattattaaattttaaataaatgggt |
7683513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 7683880 - 7683926
Alignment:
| Q |
1 |
ctcgtcatgtttctgattttgaaatttgcttttatgcaagttgcatt |
47 |
Q |
| |
|
|||||||||||| |||||||| ||||||||||||||||||||||||| |
|
|
| T |
7683880 |
ctcgtcatgtttttgattttggaatttgcttttatgcaagttgcatt |
7683926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 124
Target Start/End: Original strand, 7683443 - 7683546
Alignment:
| Q |
19 |
ttgaaatttgcttttatgcaagttgcatttccctttcctatgnnnnnnnnnattaaattttaaataaacaagtttgtagtcaggcacgcatccactcatg |
118 |
Q |
| |
|
||||| ||||||||| |||||||||||| |||||||||||| ||||||||||||||||| ||||||||||| || || ||||||||||| |
|
|
| T |
7683443 |
ttgaagtttgctttttcgcaagttgcattcccctttcctatgttttatt--attaaattttaaataaatgggtttgtagtcatgcgcggatccactcatg |
7683540 |
T |
|
| Q |
119 |
tggtat |
124 |
Q |
| |
|
|||||| |
|
|
| T |
7683541 |
tggtat |
7683546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 119 - 168
Target Start/End: Original strand, 12325803 - 12325852
Alignment:
| Q |
119 |
tggtattggggacaattgcctccactaatgtttatattatatgtgttgaa |
168 |
Q |
| |
|
||||||||| | ||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
12325803 |
tggtattggaggaaattgcccccactaatgtttatgttatatgtgttgaa |
12325852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University