View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1441_low_109 (Length: 246)
Name: NF1441_low_109
Description: NF1441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1441_low_109 |
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Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 48877129 - 48877356
Alignment:
| Q |
1 |
tttggctacactatttgaagcttattcaaaccagttcagtccttatttcttctacctcagaaaaattcggacaattcaagtggagtatactgatgcatta |
100 |
Q |
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| T |
48877129 |
tttggctccactatttgaagcttattcaaaccagttcagtccttatttcttctacctcagaaaaattcggacaattcaagtggagtatactgatgcatta |
48877228 |
T |
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| Q |
101 |
gagtttatcctgcaggctgctcgtaaaactctagtgcaactcagggttttcgaattcaatgtaacaagtagactatcatagtgtgtttgcggttggcaga |
200 |
Q |
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| T |
48877229 |
gagtttatcctgcaggctgctcgtaaaactctagtgcaactcagggttttcgaattcaatgtaacaagtagactatcatagtgtgtttgcggttggcaga |
48877328 |
T |
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| Q |
201 |
aataccggaactggaactgtctttatgc |
228 |
Q |
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| T |
48877329 |
aataccggaactggaattgtctttatgc |
48877356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 48 - 169
Target Start/End: Complemental strand, 8380756 - 8380634
Alignment:
| Q |
48 |
tcttctacctcagaaaaattcggacaattcaagtggagtatactgatgcattagagtttatcctgcaggctgctcgtaaaactctag-tgcaactcaggg |
146 |
Q |
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| T |
8380756 |
tcttctacctcgggaaaattcggaccattcagttggagtataccgatgcaaaagagtctctcctgcaggctgctcgtaaagcaccagttgcagcacaggg |
8380657 |
T |
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| Q |
147 |
ttttcgaattcaatgtaacaagt |
169 |
Q |
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| T |
8380656 |
gtttcggattcagtgtaacaagt |
8380634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 43 - 206
Target Start/End: Complemental strand, 53456132 - 53455968
Alignment:
| Q |
43 |
ttatttcttctacctcagaaaaattcggacaattcaagtggagtatactgatgcattagagtttatcctgcaggctgctcgtaaaactctag-tgcaact |
141 |
Q |
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|||| ||||||||||| | ||||| ||||| |||||| |||||||||| |||||| ||||| | ||||||| |||||||||||| ||| || |||| || |
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| T |
53456132 |
ttatctcttctacctcgggaaaatccggactattcaattggagtatacagatgcaaaagagtctctcctgcaagctgctcgtaaagctccagttgcagct |
53456033 |
T |
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| Q |
142 |
cagggttttcgaattcaatgtaacaagtagactatcatagtgtgtttgcggttggcagaaatacc |
206 |
Q |
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| T |
53456032 |
cggggttttcgaattcaatgtaacaagtgggctatcatagtgcgtttactgttgggagagatacc |
53455968 |
T |
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