View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1441_low_111 (Length: 245)
Name: NF1441_low_111
Description: NF1441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1441_low_111 |
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Alignment Details
Target: chr7 (Bit Score: 227; Significance: 1e-125; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 37750006 - 37750244
Alignment:
| Q |
1 |
attttaaaataattccatgtctttcacgccattttcagaagaggacctcgtgagttggaagaccaatttgtgtgagtaaattgtttcattatgcctgggt |
100 |
Q |
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| T |
37750006 |
attttaaaataattccatatctttcacgccattttcagaagaggacctcgtgagttggaggaccaatttgtgtgagtaaattgtttcattatgcctgggt |
37750105 |
T |
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| Q |
101 |
ccctttactgaattcattagcttttaagtgtagcgaataatgcttttcatattgtcatgagaattaataaatcaccagtagcaattttgcaccatcagtg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
37750106 |
ccctttactgaattcattagcttttaagtgtagcgaataatgcttttcatattgtcatgagaattgataaatcaccagtagcaattttgcaccatcagtg |
37750205 |
T |
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| Q |
201 |
tcttgaatctttttaaacaaaaatctcgttttagtataa |
239 |
Q |
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| T |
37750206 |
tcttgaatctttttaaacaaaaatctcgttttagtataa |
37750244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 136 - 239
Target Start/End: Original strand, 37734679 - 37734782
Alignment:
| Q |
136 |
aataatgcttttcatattgtcatgagaattaataaatcaccagtagcaattttgcaccatcagtgtcttgaatctttttaaacaaaaatctcgttttagt |
235 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
37734679 |
aataatgcttttcatattgtcatgagaattgataaatcaccagtagcaattttgcaccatcagtgtcttgaatctttctaaacaaaaatctcgttttagt |
37734778 |
T |
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| Q |
236 |
ataa |
239 |
Q |
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|||| |
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| T |
37734779 |
ataa |
37734782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 37734528 - 37734611
Alignment:
| Q |
1 |
attttaaaataattccatgtctttcacgccattttcagaagaggacctcgtgagttggaagaccaatttgtgtgagtaaattgtt |
85 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |||||||||||||| |||||||||||| |
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| T |
37734528 |
attttaaaataattccatatctttcacgccattttcagaaga-tacctcgtgagttgtaagaccaatttgtgagagtaaattgtt |
37734611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 130 - 192
Target Start/End: Complemental strand, 38612357 - 38612295
Alignment:
| Q |
130 |
gtagcgaataatgcttttcatattgtcatgagaattaataaatcaccagtagcaattttgcac |
192 |
Q |
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||||| ||||||| || ||||||||| ||||||||| |||||||||||||||||||||||||| |
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| T |
38612357 |
gtagctaataatgtttctcatattgttatgagaattgataaatcaccagtagcaattttgcac |
38612295 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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