View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1441_low_116 (Length: 240)
Name: NF1441_low_116
Description: NF1441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1441_low_116 |
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Alignment Details
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 17 - 224
Target Start/End: Original strand, 41310664 - 41310871
Alignment:
| Q |
17 |
ttaatcaattaccaaatatttgtcaaaaactactaaagaaccacaaaatgagagttcataatacaagatagatatcaataaaatgataaataccaaaatt |
116 |
Q |
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| T |
41310664 |
ttaatcaattaccaaatatttgtcaaaaactactaaagaaccacaaaatgagagttcataatacaagatagatatcagtaaaatgataaataccaatatt |
41310763 |
T |
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| Q |
117 |
tcacaatcaaattcttctagtttggtatcactagtcatcttaagtttagtgaaagtagagactctgtatacagtgccatttgggatctcataaagcaacg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
41310764 |
tcacaatcaaattcttctagtttggtatcactagtcatcttaagtttagtgaaagtagagactctgtatacaccgccatttgggatctcataaagcaacg |
41310863 |
T |
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| Q |
217 |
gtcactat |
224 |
Q |
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|||||||| |
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| T |
41310864 |
gtcactat |
41310871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 67 - 160
Target Start/End: Original strand, 43164372 - 43164465
Alignment:
| Q |
67 |
agagttcataatacaagatagatatcaataaaatgataaataccaaaatttcacaatcaaattcttctagtttggtatcactagtcatcttaag |
160 |
Q |
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| T |
43164372 |
agagttcatgatacaagatagatatcactaaaaaggtaaatatgaatatttcacaatcaaattcttctagtttgttatcactggtcatcttaag |
43164465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 67 - 160
Target Start/End: Complemental strand, 30166226 - 30166128
Alignment:
| Q |
67 |
agagttcataatacaagatagatatcaataaaatgataaataccaaaatttcacaatcaaat-----tcttctagtttggtatcactagtcatcttaag |
160 |
Q |
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| T |
30166226 |
agagttcataatacaagatcaatatcagtaaaatggaaaatacaaatatttcacaatcaaatcaaattcttattgtttggtatcactagttatcttaag |
30166128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 164 - 221
Target Start/End: Complemental strand, 30166107 - 30166050
Alignment:
| Q |
164 |
agtgaaagtagagactctgtatacagtgccatttgggatctcataaagcaacggtcac |
221 |
Q |
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|||||||| ||||||||| |||||| ||||||||||||||||||||| ||||||||| |
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| T |
30166107 |
agtgaaagcagagactctatatacaccgccatttgggatctcataaagtaacggtcac |
30166050 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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