View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1441_low_12 (Length: 477)
Name: NF1441_low_12
Description: NF1441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1441_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 207 - 460
Target Start/End: Complemental strand, 47591574 - 47591321
Alignment:
| Q |
207 |
ggcaaaaagagagagagaaacaaacgaataacactagaatttgtaaactgtttgtccctttactcactcctttcgccttcttattttatctttatgtgaa |
306 |
Q |
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| T |
47591574 |
ggcaaaaagagagagagaaacaaacgaatcacactagaatttgtaaactgtttgtccctttactcactcctttcgccttcttattttatctttatgtgaa |
47591475 |
T |
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| Q |
307 |
tgaaatcaatatttgccagttggctttgtgtgcatgtgtactacagtgtcagttagtgtagtaaactgcattgggtgagtgattgagagagagaatcaag |
406 |
Q |
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| T |
47591474 |
tgaaatcaatatttgccagttggctttgtgtgcatgtgtactacagtgtcagttagtgtagtaaactgcattgagtgagtgattgagagagagaatcaag |
47591375 |
T |
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| Q |
407 |
tgaagagaaagagatattatacatacatagcagaattaccaattaccatgattc |
460 |
Q |
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| T |
47591374 |
tgaagagaaagagatattatacatacatagcagaattaccaattaccatgattc |
47591321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 14 - 112
Target Start/End: Complemental strand, 47591767 - 47591669
Alignment:
| Q |
14 |
atgaatgaatgaaaactagtgttgtagagtggtaaaggacctatagaactagagtttctttttctttctttctcttatgcttgttaatgtgtttgtttt |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
47591767 |
atgaatgaatgaaaactagtgttgtagagtggtaaaggacctatagaactagagtttctttttttttctttctcttatgcttgttaatgtgtttgtttt |
47591669 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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