View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1441_low_124 (Length: 238)
Name: NF1441_low_124
Description: NF1441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1441_low_124 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 60 - 238
Target Start/End: Original strand, 19524367 - 19524542
Alignment:
| Q |
60 |
cagagaacaatatcagacaaaatgagctatctaagggatgcaataagtatgacaatactacaatcatataattacaaatgaatattgttaattatataaa |
159 |
Q |
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| T |
19524367 |
cagagaacaatatcagacaaaatgagctatctaagggatgcaataattatgacaatactacaatcatataattacaaatgaatattgttaattatataaa |
19524466 |
T |
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| Q |
160 |
atgttgannnnnnngactaaccttatttcctttaacaatgtctatgtttcaaaagttcgtttttgtgaaagaatatttc |
238 |
Q |
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| T |
19524467 |
atgttgatatctttgactaactttat---gtttaacaatgtatatgtttcataagttcttttttgtgaaagaatatttc |
19524542 |
T |
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Target: chr7 (Bit Score: 67; Significance: 7e-30; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 73 - 196
Target Start/End: Original strand, 41279912 - 41280035
Alignment:
| Q |
73 |
cagacaaaatgagctatctaagggatgcaataagtatgacaatactacaatcatataattacaaatgaatattgttaattatataaaatgttgannnnnn |
172 |
Q |
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| T |
41279912 |
cagacaaaatgaggtgtctaagggatacaataattatgacaatattacaatcatataattacaaatgaatactgttaattatattaaatgttgatttctt |
41280011 |
T |
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| Q |
173 |
ngactaaccttatttcctttaaca |
196 |
Q |
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| T |
41280012 |
tgactaattttatttcctttaaca |
41280035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 73 - 166
Target Start/End: Original strand, 41286968 - 41287061
Alignment:
| Q |
73 |
cagacaaaatgagctatctaagggatgcaataagtatgacaatactacaatcatataattacaaatgaatattgttaattatataaaatgttga |
166 |
Q |
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| T |
41286968 |
cagacaaaatgaggtgtctaagggatacaataattatgacaatattacaatcatataattacaaatgaatactgttaattatattaaatgttga |
41287061 |
T |
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