View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1441_low_127 (Length: 237)
Name: NF1441_low_127
Description: NF1441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1441_low_127 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 43099788 - 43099571
Alignment:
| Q |
1 |
tttaaaatcctatgcacatgcaaaagtactgtttccttgatcaagttctttagtctaatgctattaaaaaatgctataatatacatcaaatgtaaatatt |
100 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43099788 |
tttaaaatcctatgcacatgcaaaa---ctgtttccttgatcaagttctttagtctaatgctattaaaaaatgctataatatacatcaaatgtaaatatt |
43099692 |
T |
|
| Q |
101 |
ttgataggaactttgatttctttcaaatttcaagcaatcagttaaaactcaaaatatatcgtacttttaccaacattcatagaattaacaactagactac |
200 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
43099691 |
ttgataggaacttagatttctttcaaatttcaagcaatcagttaaaactcaaaatatatcgtacttttaccaacattcatagaattaacaaccagactac |
43099592 |
T |
|
| Q |
201 |
accatgcaacagaataaaaag |
221 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
43099591 |
accatgcaacagaataaaaag |
43099571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 109 - 169
Target Start/End: Complemental strand, 48446739 - 48446679
Alignment:
| Q |
109 |
aactttgatttctttcaaatttcaagcaatcagttaaaactcaaaatatatcgtactttta |
169 |
Q |
| |
|
||||| ||||||||||| ||||||||||||| ||||||||||||||||||| || ||||| |
|
|
| T |
48446739 |
aacttggatttctttcatgtttcaagcaatcaattaaaactcaaaatatatcatagtttta |
48446679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 119
Target Start/End: Original strand, 2849434 - 2849472
Alignment:
| Q |
81 |
atacatcaaatgtaaatattttgataggaactttgattt |
119 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| ||||| |
|
|
| T |
2849434 |
atacatcaaatgttaatattttgataggaacttggattt |
2849472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 115 - 160
Target Start/End: Original strand, 38489722 - 38489767
Alignment:
| Q |
115 |
gatttctttcaaatttcaagcaatcagttaaaactcaaaatatatc |
160 |
Q |
| |
|
|||||| ||||| ||||||||||||| ||||||||||||||||||| |
|
|
| T |
38489722 |
gatttcattcaagtttcaagcaatcaattaaaactcaaaatatatc |
38489767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University