View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1441_low_128 (Length: 237)
Name: NF1441_low_128
Description: NF1441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1441_low_128 |
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| [»] chr7 (1 HSPs) |
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| [»] scaffold0041 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 17 - 237
Target Start/End: Original strand, 41086840 - 41087059
Alignment:
| Q |
17 |
acaatggtacccatttttatacattatgttacaaaaatacacatgtgtctaatattcgtctaaagtttggttgataatccttattgtaaatgggttagaa |
116 |
Q |
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| T |
41086840 |
acaatggtacccatttttatacattatgttacaaaaatacacatgtgtctaatattcgtctaaagtttggatgataatccttattgtaaatgggtt---- |
41086935 |
T |
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| Q |
117 |
tacccattatgcactaatcaataaaattttacttataaaaaacgtactcggat---agaatccaaagnnnnnnnnnnnnngagaaaggggtagaatattt |
213 |
Q |
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| T |
41086936 |
cacccattatgcactaatcaataaaattttacttataaaaaacgtactggggtagaagaatccaaagttttttcttttatgagaaaggggtagaatattt |
41087035 |
T |
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| Q |
214 |
gatactgggatggaatccaaattt |
237 |
Q |
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| T |
41087036 |
gatactgggatggaatccaaattt |
41087059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041 (Bit Score: 131; Significance: 4e-68; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 17 - 237
Target Start/End: Complemental strand, 104272 - 104052
Alignment:
| Q |
17 |
acaatggtacccatttttatacattatgttacaaaaatacacatgtgtctaatattcgtctaaagttt-ggttgataatccttattgtaaatgggttaga |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |
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| T |
104272 |
acaatggtacccatttttatacattatgttacaaaaatacacatgtgtctaatattcgtctaaagtttgggatgataatccttattgtaaatgggtt--- |
104176 |
T |
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| Q |
116 |
atacccattatgcactaatcaataaaattttacttataaaaaacgtactcggat---agaatccaaagnnnnnnnnnnnnngagaaaggggtagaatatt |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| || | ||||||||||| ||||||||||||||||||| |
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| T |
104175 |
-cacccattatgcactaatcaataaaattttacttataaaaaacgtactggggtagaagaatccaaagttttttcttttatgagaaaggggtagaatatt |
104077 |
T |
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| Q |
213 |
tgatactgggatggaatccaaattt |
237 |
Q |
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| T |
104076 |
tgatactgggatggaatccaaattt |
104052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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