View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1441_low_129 (Length: 237)
Name: NF1441_low_129
Description: NF1441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1441_low_129 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 18 - 237
Target Start/End: Complemental strand, 38717056 - 38716837
Alignment:
| Q |
18 |
tgatgtttatatagtatagtaggtcgtgtattagggaaaattcatatttacccgtaataaaatgtgggtccatatcagtgtcaattaaaatcatttattt |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
38717056 |
tgatgtttatatagtatagtaggtcgtgtattagggaaaattcatatttacccgtaataaaatgtgggtccatatcagtgttaattaaaatcatttattt |
38716957 |
T |
|
| Q |
118 |
gtcttcaactatgtcataaaataatcaattaattcaattgataagatgtgaatttctaatcattatattatttgaacaaaaaataataatgaaatataaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
38716956 |
gtcttcaactatgtcataaaataatcaattaattcaattgataagatgtgaatttctaatcattatgttatttgaacaaaaaataataatgaaatataaa |
38716857 |
T |
|
| Q |
218 |
ttaataattttagttgatgt |
237 |
Q |
| |
|
||||| |||||||||||||| |
|
|
| T |
38716856 |
ttaatgattttagttgatgt |
38716837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University