View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1441_low_131 (Length: 236)
Name: NF1441_low_131
Description: NF1441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1441_low_131 |
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Alignment Details
Target: chr7 (Bit Score: 208; Significance: 1e-114; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 6 - 221
Target Start/End: Complemental strand, 29325296 - 29325081
Alignment:
| Q |
6 |
aaggtaaattttcggctgtgcaagctgatagttgtacttgagatctatatatagctaagttaaattttcagttgtacaagctgatttgggctaaagccca |
105 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29325296 |
aaggtaaattttcggctgtgcaagctgatagctgtacttgagatctatatatagctaagttaaattttcagttgtacaagctgatttgggctaaagccca |
29325197 |
T |
|
| Q |
106 |
gatctcgggtggctcacatgcgtaaaatcttcacaatcttaaagtctgatgcagtgggtggtaatcatctttgttgatgatctttgcataaatcattcat |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29325196 |
gatctcgggtggctcacatgcgtaaaatcttcacaatcttagagtctgatgcagtgggtggtaatcatctttgttgatgatctttgcataaatcattcat |
29325097 |
T |
|
| Q |
206 |
gtgatggtttaatcct |
221 |
Q |
| |
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|||||||||||||||| |
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| T |
29325096 |
gtgatggtttaatcct |
29325081 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 44 - 221
Target Start/End: Original strand, 28964658 - 28964835
Alignment:
| Q |
44 |
tgagatctatatatagctaagttaaattttcagttgtacaagctgatttgggctaaagcccagatctcgggtggctcacatgcgtaaaatcttcacaatc |
143 |
Q |
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||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28964658 |
tgagatctatatatagctaaggtaaattttcagctgtgcaagctgatttgggctaaagcccagatctcgggtggctcacatgcgtaaaatcttcacaatc |
28964757 |
T |
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| Q |
144 |
ttaaagtctgatgcagtgggtggtaatcatctttgttgatgatctttgcataaatcattcatgtgatggtttaatcct |
221 |
Q |
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| T |
28964758 |
ttagagtatgatgcagtgggtggtaatcatctttgttgatgatctttgcataactcattcatgtaatggtttaatcct |
28964835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 28964671 - 28964704
Alignment:
| Q |
1 |
tagctaaggtaaattttcggctgtgcaagctgat |
34 |
Q |
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|||||||||||||||||| ||||||||||||||| |
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| T |
28964671 |
tagctaaggtaaattttcagctgtgcaagctgat |
28964704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 35089633 - 35089413
Alignment:
| Q |
1 |
tagctaaggtaaattttcggctgtgcaagctgatagttgtacttgagatctatatatagctaagttaaattttcagttgtacaagctgatttgggctaaa |
100 |
Q |
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|
||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |||||| |
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| T |
35089633 |
tagctaaggtaaattttcgactgtgcaagctgatagctgtacttgagatctatatatagctaaggtaaattttcagttgtacaagttgatttgcgctaaa |
35089534 |
T |
|
| Q |
101 |
gcccagatctcgggtggctcacatgcgtaaaatcttcacaatcttaaagtctgatgcagtgggtggtaatcatctttgttgatgatctttgcataaatca |
200 |
Q |
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||||| |||||||||||||||||||| ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |||||||| |
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| T |
35089533 |
gcccaaatctcgggtggctcacatgcataaaatcttcacaatcttagagtctgatggagtgggtggtaatcatctttgttgatgatctttgtataaatca |
35089434 |
T |
|
| Q |
201 |
ttcatgtgatggtttaatcct |
221 |
Q |
| |
|
||||||||||||||||||||| |
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| T |
35089433 |
ttcatgtgatggtttaatcct |
35089413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 113 - 218
Target Start/End: Original strand, 29795853 - 29795957
Alignment:
| Q |
113 |
ggtggctcacatgcgtaaaatcttcacaatcttaaagtctgatgcagtgggtggtaatcatctttgttgatgatctttgcataaatcattcatgtgatgg |
212 |
Q |
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||||||||||| | |||||||||||||||||||| | | || |||||||||||||| ||||||| |||||| || |||||| ||||||| ||| ||||| |
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| T |
29795853 |
ggtggctcacacgtgtaaaatcttcacaatcttagattttgctgcagtgggtggtattcatcttggttgattatttttgcaagaatcatt-atgcgatgg |
29795951 |
T |
|
| Q |
213 |
tttaat |
218 |
Q |
| |
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|||||| |
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|
| T |
29795952 |
tttaat |
29795957 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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