View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1441_low_138 (Length: 233)

Name: NF1441_low_138
Description: NF1441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1441_low_138
NF1441_low_138
[»] chr4 (3 HSPs)
chr4 (7-233)||(30053464-30053700)
chr4 (7-233)||(30038049-30038285)
chr4 (6-219)||(30065431-30065644)


Alignment Details
Target: chr4 (Bit Score: 169; Significance: 9e-91; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 7 - 233
Target Start/End: Complemental strand, 30053700 - 30053464
Alignment:
Q  7 agaaaatgatgacgaagaaacgtacatataagaaatccgatgagctcaattaaattagttcagctgtgtgcatatttaagttgctta---atgtatccta 103  Q
    ||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||| |||||    
T  30053700 agaaaatgatgacgacgaaacgtacatatgagaaatccgatgagctcaattaaattagttcagctgtgtgcatatttaagttgcttaaatatgtgtccta 30053601  T
Q  104 atatagtgtgggaaggtactgaaaagtaatggtaaaatttgaatgtcttcagttaatatgtaaaggga-------tgatgagcatgttacgtgacttaat 196  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||       ||||||||| |||||||||||||||    
T  30053600 atatagtgtgggaaggtactgaaaagtaatggtaaaatttgaatgtcttcagttaaaatgtaaagggatgatgattgatgagcaagttacgtgacttaat 30053501  T
Q  197 actgagagaattgctacataaaattgcagtggctctt 233  Q
    |||| |||||||||||||||||| |||||||||||||    
T  30053500 actgtgagaattgctacataaaagtgcagtggctctt 30053464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 7 - 233
Target Start/End: Complemental strand, 30038285 - 30038049
Alignment:
Q  7 agaaaatgatgacgaagaaacgtacatataagaaatccgatgagctcaattaaattagttcagctgtgtgcatatttaagttgcttaa---tgtatccta 103  Q
    ||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||   |||||||||    
T  30038285 agaaaatgatgacgacgaaacgtacatatgagaaattcgatgagctcaattaaattagttcagctgtgtgcaaatttaagttgcttaaatatgtatccta 30038186  T
Q  104 atatagtgtgggaaggtactgaaaagtaatggtaaaatttgaatgtcttcagttaatatgtaaagggatg-------atgagcatgttacgtgacttaat 196  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||       ||||||| |||||||||||||||    
T  30038185 atatagtgtgggaaggtactgaaaagtaatggtaaaatttgaatgtcttcagttaaaatgtaaagggatgatgattgatgagcaagttacgtgacttaat 30038086  T
Q  197 actgagagaattgctacataaaattgcagtggctctt 233  Q
    |||| |||||||||||||||||| |||||||||||||    
T  30038085 actgtgagaattgctacataaaagtgcagtggctctt 30038049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 6 - 219
Target Start/End: Complemental strand, 30065644 - 30065431
Alignment:
Q  6 aagaaaatgatgacgaagaaacgtacatataagaaatccgatgagctcaattaaattagttcagctgtgtgcatatttaagttgcttaatgtatcctaat 105  Q
    ||||||||||||| || ||||||||||||| ||||||| |||||||||||||||||||||||||  |||||||||||||| ||||||||||| |||||||    
T  30065644 aagaaaatgatgatgaggaaacgtacatatgagaaatctgatgagctcaattaaattagttcagtggtgtgcatatttaatttgcttaatgtgtcctaat 30065545  T
Q  106 atagtgtgggaaggtactgaaaagtaatggtaaaatttgaatgtcttcagttaatatgtaaagggatgatgagcatgttacgtgacttaatactgagaga 205  Q
    |||||||||||||||| ||||||||||||| ||||||||||| ||||| ||||  ||||||||||||||||||| ||||||||| ||| |||||| ||||    
T  30065544 atagtgtgggaaggtattgaaaagtaatggcaaaatttgaatatcttcggttataatgtaaagggatgatgagcttgttacgtgtcttgatactgtgaga 30065445  T
Q  206 attgctacataaaa 219  Q
    || |||||||||||    
T  30065444 atggctacataaaa 30065431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University