View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1441_low_14 (Length: 465)
Name: NF1441_low_14
Description: NF1441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1441_low_14 |
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| [»] scaffold0019 (2 HSPs) |
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| [»] scaffold0941 (1 HSPs) |
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Alignment Details
Target: scaffold0019 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 229 - 455
Target Start/End: Original strand, 140638 - 140865
Alignment:
| Q |
229 |
ctgatgtgttacaatcttgaagggagggttgtccaaggtctgtgcttgactatcaacatgttccttctctagattctctaataa-ttgaacttcagccgg |
327 |
Q |
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| T |
140638 |
ctgatgtgttacaatcttgaagggagggttgtccaaggtctgtgcttgactatcaacatgttccttctctagattctctaataaattgaacttcagccgg |
140737 |
T |
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| Q |
328 |
ctcatcttctgcaatatttgcccatgactgtttcaaaaattctgcatttttcctgactatatcttctgtagtttcttgctcttcctcctcttcgtcctct |
427 |
Q |
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| T |
140738 |
ctcatcttctgcaatatttgcccatgactgtttcaaaaattctgcatttttcttgactctatcttctgtaatttcttgctcttcctcctcttcctcctct |
140837 |
T |
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| Q |
428 |
cgtaagttattcccctctcccatctgtg |
455 |
Q |
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| T |
140838 |
ggtaagttattcccctctcccatttgtg |
140865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 140410 - 140600
Alignment:
| Q |
1 |
gtaagtcttcaaatctcatccaaggctctgcaatgagaattatatcaggtttgttattttgtattaggtttttgagtgccaatcttgtaggttgattggc |
100 |
Q |
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| T |
140410 |
gtaagtcttcaaatctcatccaaggctctgcaatgagaattatatcaggttcgttattttgtattaggtttttgagtgccaatcttgtaggttgattggc |
140509 |
T |
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| Q |
101 |
taagcctcttaggttccaataaaggatcttcatctaaaaggtttggggtgtgcagcctttgatctggtagagtaaaggttagaaggcgtag |
191 |
Q |
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| T |
140510 |
taagcctcttaggttccaataaaggatcttcatctaaaaggtttggggtgtgcagcctttgatctggtagagtaaaggttagaaggcgtag |
140600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0941 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0941
Description:
Target: scaffold0941; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 99 - 147
Target Start/End: Complemental strand, 1584 - 1536
Alignment:
| Q |
99 |
gctaagcctcttaggttccaataaaggatcttcatctaaaaggtttggg |
147 |
Q |
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| T |
1584 |
gctaaacctcttaagttccaataaaggcacttcatctaaaaggcttggg |
1536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 51 - 87
Target Start/End: Complemental strand, 21004338 - 21004302
Alignment:
| Q |
51 |
ttgttattttgtattaggtttttgagtgccaatcttg |
87 |
Q |
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| T |
21004338 |
ttgttatttagaattaggtttttgagtgccaatcttg |
21004302 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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