View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1441_low_140 (Length: 232)

Name: NF1441_low_140
Description: NF1441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1441_low_140
NF1441_low_140
[»] chr2 (2 HSPs)
chr2 (9-232)||(5436710-5436933)
chr2 (20-143)||(554445-554568)
[»] scaffold0867 (1 HSPs)
scaffold0867 (20-127)||(4663-4770)
[»] chr7 (13 HSPs)
chr7 (20-127)||(22100462-22100569)
chr7 (20-129)||(22070080-22070189)
chr7 (20-129)||(22080837-22080946)
chr7 (19-106)||(16839396-16839483)
chr7 (77-134)||(15443990-15444047)
chr7 (19-106)||(16846479-16846566)
chr7 (57-131)||(660837-660911)
chr7 (57-131)||(14076684-14076758)
chr7 (57-131)||(14386712-14386786)
chr7 (57-123)||(29454101-29454167)
chr7 (57-119)||(29899380-29899442)
chr7 (47-131)||(19351059-19351143)
chr7 (79-131)||(19357938-19357990)
[»] chr4 (6 HSPs)
chr4 (21-130)||(53774810-53774919)
chr4 (23-131)||(53790525-53790633)
chr4 (20-127)||(8443448-8443555)
chr4 (41-123)||(3560956-3561038)
chr4 (54-123)||(3565747-3565816)
chr4 (20-125)||(10460594-10460699)
[»] chr3 (3 HSPs)
chr3 (41-131)||(3625724-3625814)
chr3 (19-127)||(25901273-25901381)
chr3 (19-127)||(25915291-25915399)
[»] chr1 (1 HSPs)
chr1 (20-121)||(50645485-50645586)
[»] chr6 (1 HSPs)
chr6 (79-131)||(17369692-17369744)


Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 9 - 232
Target Start/End: Complemental strand, 5436933 - 5436710
Alignment:
Q  9 taaacaaccacctttgtttttctcatgaatttaagggaacccatcttattatatggcagatgacaaaatatggagttgaggagtcttggaatcaattatt 108  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5436933 taaacaaccacctatgtttttctcatgaatttaagggaacccatcttattatatggcagatgacaaaatatggagttgaggagtcttggaatcaattatt 5436834  T
Q  109 aaaaattagttatcagaatcttccaagtatacatcctcatccttattgggtgccactatacttttctgagacatgtgattatatgctgatatttgctaac 208  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||    
T  5436833 aaaaattagtcatcagaatcttccaagtatacatcctcatccttattgggtaccactatacttttctgagacatgtgattatatactgatatttgctaac 5436734  T
Q  209 aaattagaagaccaagcaattctc 232  Q
    ||||||||||||||||||||||||    
T  5436733 aaattagaagaccaagcaattctc 5436710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 20 - 143
Target Start/End: Original strand, 554445 - 554568
Alignment:
Q  20 ctttgtttttctcatgaatttaagggaacccatcttattatatggcagatgacaaaatatggagttgaggagtcttggaatcaattattaaaaattagtt 119  Q
    |||||||||||||| || ||| ||||||||||||||||||||||||| |||| | ||||||||||| | |||||||||| ||||||| | ||||||||||    
T  554445 ctttgtttttctcacgattttgagggaacccatcttattatatggcaaatgatagaatatggagttaaagagtcttggactcaattacttaaaattagtt 554544  T
Q  120 atcagaatcttccaagtatacatc 143  Q
    || ||  ||||| || ||||||||    
T  554545 atgaggttcttcaaaatatacatc 554568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0867 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0867
Description:

Target: scaffold0867; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 20 - 127
Target Start/End: Complemental strand, 4770 - 4663
Alignment:
Q  20 ctttgtttttctcatgaatttaagggaacccatcttattatatggcagatgacaaaatatggagttgaggagtcttggaatcaattattaaaaattagtt 119  Q
    ||||||||||||||||| || ||   ||| ||| ||||||||||||| ||||  |||| ||||||| | |||||||||| ||| ||||| ||||||||||    
T  4770 ctttgtttttctcatgatttcaaaaaaactcattttattatatggcaaatgaagaaatttggagttcaagagtcttggactcagttattcaaaattagtt 4671  T
Q  120 atcagaat 127  Q
    ||||||||    
T  4670 atcagaat 4663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 3e-16; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 20 - 127
Target Start/End: Original strand, 22100462 - 22100569
Alignment:
Q  20 ctttgtttttctcatgaatttaagggaacccatcttattatatggcagatgacaaaatatggagttgaggagtcttggaatcaattattaaaaattagtt 119  Q
    ||||||||||||||||| || ||   ||| ||| ||||||||||||| ||||  |||| ||||||| | |||||||||| ||| ||||| ||||||||||    
T  22100462 ctttgtttttctcatgatttcaaaaaaactcattttattatatggcaaatgaagaaatttggagttcaagagtcttggactcagttattcaaaattagtt 22100561  T
Q  120 atcagaat 127  Q
    ||||||||    
T  22100562 atcagaat 22100569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 129
Target Start/End: Original strand, 22070080 - 22070189
Alignment:
Q  20 ctttgtttttctcatgaatttaagggaacccatcttattatatggcagatgacaaaatatggagttgaggagtcttggaatcaattattaaaaattagtt 119  Q
    ||||||||||||||||| || ||  |||| ||| ||||||||||||| ||||   ||| ||||||| | |||||||||| ||  ||||| ||||||||||    
T  22070080 ctttgtttttctcatgatttcaaacgaactcattttattatatggcaaatgaagcaatttggagttcaagagtcttggactcggttattcaaaattagtt 22070179  T
Q  120 atcagaatct 129  Q
    || |||||||    
T  22070180 ataagaatct 22070189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 129
Target Start/End: Original strand, 22080837 - 22080946
Alignment:
Q  20 ctttgtttttctcatgaatttaagggaacccatcttattatatggcagatgacaaaatatggagttgaggagtcttggaatcaattattaaaaattagtt 119  Q
    ||||||||||||||||| || ||   ||| ||| ||||||||||||| ||||   ||| ||||||| | |||||||||| ||  ||||| ||||||||||    
T  22080837 ctttgtttttctcatgatttcaaacaaactcattttattatatggcaaatgaagcaatttggagttcaagagtcttggactcggttattcaaaattagtt 22080936  T
Q  120 atcagaatct 129  Q
    ||||||||||    
T  22080937 atcagaatct 22080946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 106
Target Start/End: Complemental strand, 16839483 - 16839396
Alignment:
Q  19 cctttgtttttctcatgaatttaagggaacccatcttattatatggcagatgacaaaatatggagttgaggagtcttggaatcaatta 106  Q
    |||||||||||||||||   |||||  ||| |||||| |||||||| |||||||| | ||||||||| | |||||||||| |||||||    
T  16839483 cctttgtttttctcatgttgttaagaaaactcatcttgttatatggaagatgacagattatggagttcaagagtcttggactcaatta 16839396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 77 - 134
Target Start/End: Original strand, 15443990 - 15444047
Alignment:
Q  77 tatggagttgaggagtcttggaatcaattattaaaaattagttatcagaatcttccaa 134  Q
    ||||||||||| |||||||||| ||||||||| || || ||||| |||||||||||||    
T  15443990 tatggagttgaagagtcttggactcaattatttaagatgagttaccagaatcttccaa 15444047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 106
Target Start/End: Complemental strand, 16846566 - 16846479
Alignment:
Q  19 cctttgtttttctcatgaatttaagggaacccatcttattatatggcagatgacaaaatatggagttgaggagtcttggaatcaatta 106  Q
    |||||||||||||||||   | |||  ||| |||||| |||||||| |||||||| | ||||||||| | |||||||||| |||||||    
T  16846566 cctttgtttttctcatgttgtcaagcaaactcatcttgttatatggaagatgacagattatggagttcaagagtcttggactcaatta 16846479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 131
Target Start/End: Complemental strand, 660911 - 660837
Alignment:
Q  57 ttatatggcagatgacaaaatatggagttgaggagtcttggaatcaattattaaaaattagttatcagaatcttc 131  Q
    |||||||||||||||   ||| | ||||||| |||||||||| ||||||  | |||||||||||||| |||||||    
T  660911 ttatatggcagatgaaggaatttcgagttgaagagtcttggactcaattccttaaaattagttatcataatcttc 660837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 131
Target Start/End: Original strand, 14076684 - 14076758
Alignment:
Q  57 ttatatggcagatgacaaaatatggagttgaggagtcttggaatcaattattaaaaattagttatcagaatcttc 131  Q
    |||||||||| ||||   ||| ||||||||| || ||||||| ||||||  | ||||||||||||||||||||||    
T  14076684 ttatatggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaattagttatcagaatcttc 14076758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 131
Target Start/End: Original strand, 14386712 - 14386786
Alignment:
Q  57 ttatatggcagatgacaaaatatggagttgaggagtcttggaatcaattattaaaaattagttatcagaatcttc 131  Q
    |||||||||| ||||   ||| ||||||||| || ||||||| ||||||  | ||||||||||||||||||||||    
T  14386712 ttatatggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaattagttatcagaatcttc 14386786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 123
Target Start/End: Complemental strand, 29454167 - 29454101
Alignment:
Q  57 ttatatggcagatgacaaaatatggagttgaggagtcttggaatcaattattaaaaattagttatca 123  Q
    ||||||||| |||||  |||| ||||||||| || ||||||| |||||| || ||||||||||||||    
T  29454167 ttatatggcggatgatgaaatttggagttgaagattcttggactcaattctttaaaattagttatca 29454101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 119
Target Start/End: Original strand, 29899380 - 29899442
Alignment:
Q  57 ttatatggcagatgacaaaatatggagttgaggagtcttggaatcaattattaaaaattagtt 119  Q
    |||||||||||||||  |||| ||| ||||| ||||| |||| |||||| |||||||||||||    
T  29899380 ttatatggcagatgaagaaatttggggttgaagagtcctggactcaatttttaaaaattagtt 29899442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 131
Target Start/End: Complemental strand, 19351143 - 19351059
Alignment:
Q  47 acccatcttattatatggcagatgacaaaatatggagttgaggagtcttggaatcaattattaaaaattagttatcagaatcttc 131  Q
    |||||| || || ||||||||||||   ||| |||||||||||||||||||| || |||  | |||||||||| |||| ||||||    
T  19351143 acccattttgttttatggcagatgatggaatttggagttgaggagtcttggactccattcctcaaaattagttttcaggatcttc 19351059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 131
Target Start/End: Original strand, 19357938 - 19357990
Alignment:
Q  79 tggagttgaggagtcttggaatcaattattaaaaattagttatcagaatcttc 131  Q
    ||||||| | |||||||||| |||||| ||||||||||||| |||| ||||||    
T  19357938 tggagttcaagagtcttggactcaattcttaaaaattagttttcaggatcttc 19357990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 21 - 130
Target Start/End: Original strand, 53774810 - 53774919
Alignment:
Q  21 tttgtttttctcatgaatttaagggaacccatcttattatatggcagatgacaaaatatggagttgaggagtcttggaatcaattattaaaaattagtta 120  Q
    ||||||||||| |||| ||||| | ||| ||| || |||||||||| ||||   ||| ||||||||| |||||||||| ||||||  | |||||||||||    
T  53774810 tttgtttttcttatgattttaaagaaactcattttgttatatggcaaatgaaggaatttggagttgaagagtcttggactcaattccttaaaattagtta 53774909  T
Q  121 tcagaatctt 130  Q
    ||||||||||    
T  53774910 tcagaatctt 53774919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 23 - 131
Target Start/End: Original strand, 53790525 - 53790633
Alignment:
Q  23 tgtttttctcatgaatttaagggaacccatcttattatatggcagatgacaaaatatggagttgaggagtcttggaatcaattattaaaaattagttatc 122  Q
    |||||||||||  |  ||||| |||| ||| ||||||||||| |||||||||||| |||| ||||  | ||||||| ||||||  | |||||||||| ||    
T  53790525 tgtttttctcactatgttaagagaactcattttattatatggaagatgacaaaatttggatttgaacaatcttggactcaatttcttaaaattagttttc 53790624  T
Q  123 agaatcttc 131  Q
    |||||||||    
T  53790625 agaatcttc 53790633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 127
Target Start/End: Complemental strand, 8443555 - 8443448
Alignment:
Q  20 ctttgtttttctcatgaatttaagggaacccatcttattatatggcagatgacaaaatatggagttgaggagtcttggaatcaattattaaaaattagtt 119  Q
    |||||||||||| |||| || ||| |||| |||  | |||| ||||||||||   | | ||||||| | |||||||||| ||||||||| ||||||||||    
T  8443555 ctttgtttttcttatgatttcaagagaactcattatgttatttggcagatgaaggattttggagttcacgagtcttggattcaattatttaaaattagtt 8443456  T
Q  120 atcagaat 127  Q
    ||||||||    
T  8443455 atcagaat 8443448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 41 - 123
Target Start/End: Complemental strand, 3561038 - 3560956
Alignment:
Q  41 aagggaacccatcttattatatggcagatgacaaaatatggagttgaggagtcttggaatcaattattaaaaattagttatca 123  Q
    |||| |||| || ||||||| |||||||||| ||||| ||| ||||| |||||||||| ||||||  | ||||||||||||||    
T  3561038 aaggaaaccgattttattatttggcagatgaaaaaatttggggttgaagagtcttggactcaatttcttaaaattagttatca 3560956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 54 - 123
Target Start/End: Original strand, 3565747 - 3565816
Alignment:
Q  54 ttattatatggcagatgacaaaatatggagttgaggagtcttggaatcaattattaaaaattagttatca 123  Q
    ||||||||||||||||||   ||| ||| ||||| |||||||||| ||||||  | ||||||||||||||    
T  3565747 ttattatatggcagatgaaggaatttggggttgaagagtcttggactcaatttcttaaaattagttatca 3565816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 125
Target Start/End: Original strand, 10460594 - 10460699
Alignment:
Q  20 ctttgtttttctcatgaatttaagggaacccatcttattatatggcagatgacaaaatatggagttgaggagtcttggaatcaattattaaaaattagtt 119  Q
    |||||||| ||| |||| ||||||||||| ||| || | ||||| |||||||  || | ||||||| | ||||| |||| ||||||||| |  |||||||    
T  10460594 ctttgtttctcttatgattttaagggaactcattttgtgatatgacagatgaagaattttggagttcacgagtcatggactcaattatttattattagtt 10460693  T
Q  120 atcaga 125  Q
    ||||||    
T  10460694 atcaga 10460699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 41 - 131
Target Start/End: Original strand, 3625724 - 3625814
Alignment:
Q  41 aagggaacccatcttattatatggcagatgacaaaatatggagttgaggagtcttggaatcaattattaaaaattagttatcagaatcttc 131  Q
    |||| |||| |||||||||||||||| ||||  |||| ||| ||||| |||||||||| ||||||  | |||||||||||||| |||||||    
T  3625724 aaggtaacctatcttattatatggcaaatgaagaaatttggggttgaagagtcttggactcaatttcttaaaattagttatcaaaatcttc 3625814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 127
Target Start/End: Complemental strand, 25901381 - 25901273
Alignment:
Q  19 cctttgtttttctcatgaatttaagggaacccatcttattatatggcagatgacaaaatatggagttgaggagtcttggaatcaattattaaaaattagt 118  Q
    ||||||||||  |||||| || ||||||| |||| || |||||||| | ||||   | | | ||||| | |||||||||| |||||| ||||||||||||    
T  25901381 cctttgttttggtcatgatttcaagggaagccattttgttatatggaaaatgaaggattttcgagttcaagagtcttggattcaattgttaaaaattagt 25901282  T
Q  119 tatcagaat 127  Q
    |||||||||    
T  25901281 tatcagaat 25901273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 127
Target Start/End: Complemental strand, 25915399 - 25915291
Alignment:
Q  19 cctttgtttttctcatgaatttaagggaacccatcttattatatggcagatgacaaaatatggagttgaggagtcttggaatcaattattaaaaattagt 118  Q
    ||||||||||  |||||| || ||||||| |||| || |||||||| | ||||   | | | ||||| | |||||||||| |||||| ||||||||||||    
T  25915399 cctttgttttggtcatgatttcaagggaagccattttgttatatggaaaatgaaggattttcgagttcaagagtcttggattcaattgttaaaaattagt 25915300  T
Q  119 tatcagaat 127  Q
    |||||||||    
T  25915299 tatcagaat 25915291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 121
Target Start/End: Complemental strand, 50645586 - 50645485
Alignment:
Q  20 ctttgtttttctcatgaatttaagggaacccatcttattatatggcagatgacaaaatatggagttgaggagtcttggaatcaattattaaaaattagtt 119  Q
    |||||| ||| |||||| ||| ||||||| ||| || |||| ||||| ||||   | | ||||||| | |||||||||| ||||||||| ||||||||||    
T  50645586 ctttgtatttttcatgattttgagggaactcattttgttatgtggcaaatgaaggattttggagttcaagagtcttggattcaattatttaaaattagtt 50645487  T
Q  120 at 121  Q
    ||    
T  50645486 at 50645485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 131
Target Start/End: Original strand, 17369692 - 17369744
Alignment:
Q  79 tggagttgaggagtcttggaatcaattattaaaaattagttatcagaatcttc 131  Q
    ||||||||| || ||||||| ||||||  | ||||||||||||||||||||||    
T  17369692 tggagttgaagactcttggactcaatttcttaaaattagttatcagaatcttc 17369744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University