View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1441_low_142 (Length: 231)
Name: NF1441_low_142
Description: NF1441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1441_low_142 |
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Alignment Details
Target: chr7 (Bit Score: 173; Significance: 4e-93; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 25 - 213
Target Start/End: Original strand, 23380305 - 23380493
Alignment:
| Q |
25 |
ccaccattgtcaaatgctccatctccgcccccaccatcttcacctccacctcctccatcaaatgctccacctccgccgtcaaaacctccccctccgccac |
124 |
Q |
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| T |
23380305 |
ccaccattgtcaaatgctccatctccgcccccaccatcttcacctccacctcctccatcaaatgctccacctccgccatcaaaacctccacctccgccac |
23380404 |
T |
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| Q |
125 |
cgccaccgcttccatatgctggccggactcccattgctcggcacaacaaactcagaattacaactaaaacgaaaaaacttacagctatt |
213 |
Q |
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| T |
23380405 |
cgccaccgcttccatatgctggccggactcccattgctcggcacaacaaactcagaattataactaaaacgaaaaagcttacagctatt |
23380493 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 121 - 213
Target Start/End: Original strand, 23378127 - 23378219
Alignment:
| Q |
121 |
ccaccgccaccgcttccatatgctggccggactcccattgctcggcacaacaaactcagaattacaactaaaacgaaaaaacttacagctatt |
213 |
Q |
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||||| ||||| || ||||||||||||||| |||||||| |||||| ||||||||||||||| ||||||||||||| | |||||||||||| |
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| T |
23378127 |
ccaccaccaccactcccatatgctggccggcctcccattagtcggcataacaaactcagaattgcaactaaaacgaacatgcttacagctatt |
23378219 |
T |
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