View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1441_low_143 (Length: 231)

Name: NF1441_low_143
Description: NF1441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1441_low_143
NF1441_low_143
[»] chr7 (4 HSPs)
chr7 (1-79)||(37749492-37749570)
chr7 (26-79)||(37747936-37747989)
chr7 (152-216)||(37747799-37747863)
chr7 (152-216)||(37749355-37749419)
[»] chr8 (5 HSPs)
chr8 (26-79)||(14196669-14196722)
chr8 (152-216)||(43041296-43041360)
chr8 (152-216)||(43039404-43039468)
chr8 (23-62)||(43039320-43039359)
chr8 (26-79)||(43041178-43041231)
[»] chr2 (4 HSPs)
chr2 (152-216)||(28028040-28028104)
chr2 (26-79)||(28027941-28027994)
chr2 (153-216)||(33413781-33413844)
chr2 (25-79)||(33413918-33413970)
[»] chr4 (1 HSPs)
chr4 (26-79)||(53611216-53611269)
[»] chr1 (3 HSPs)
chr1 (26-79)||(3584473-3584526)
chr1 (26-79)||(31477942-31477995)
chr1 (26-79)||(38206825-38206878)
[»] chr3 (1 HSPs)
chr3 (26-61)||(496764-496799)
[»] chr6 (1 HSPs)
chr6 (25-57)||(31798778-31798810)


Alignment Details
Target: chr7 (Bit Score: 75; Significance: 1e-34; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 37749570 - 37749492
Alignment:
Q  1 ttatcgacgacaattttcttcctcttgttgaagtataattcatattctaatgttagttagtagaggataaatccaacta 79  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37749570 ttatcgacaacaattttcttcctcttgttgaagtataattcatattctaatgttagttagtagaggataaatccaacta 37749492  T

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Target: chr7; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 26 - 79
Target Start/End: Complemental strand, 37747989 - 37747936
Alignment:
Q  26 tgttgaagtataattcatattctaatgttagttagtagaggataaatccaacta 79  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  37747989 tgttgaagtataattcatattctgatgttagttagtagaggataaatccaacta 37747936  T

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Target: chr7; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 152 - 216
Target Start/End: Complemental strand, 37747863 - 37747799
Alignment:
Q  152 ctcaacttagcctataaatacttcgctgttgtattcagttgatgtagattgtatagcacacatct 216  Q
    ||||||||||||||||||||||| ||| ||||||||||||||| |||||||||||||| ||||||    
T  37747863 ctcaacttagcctataaatacttggcttttgtattcagttgatatagattgtatagcaaacatct 37747799  T

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Target: chr7; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 152 - 216
Target Start/End: Complemental strand, 37749419 - 37749355
Alignment:
Q  152 ctcaacttagcctataaatacttcgctgttgtattcagttgatgtagattgtatagcacacatct 216  Q
    ||||||||||||||||| |||||  || ||||||||||||||| |||||||||||||||||||||    
T  37749419 ctcaacttagcctataagtacttaacttttgtattcagttgatatagattgtatagcacacatct 37749355  T

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Target: chr8 (Bit Score: 50; Significance: 9e-20; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 26 - 79
Target Start/End: Original strand, 14196669 - 14196722
Alignment:
Q  26 tgttgaagtataattcatattctaatgttagttagtagaggataaatccaacta 79  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  14196669 tgttgaagtataattcatattctaatgttagttagtataggataaatccaacta 14196722  T

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Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 152 - 216
Target Start/End: Original strand, 43041296 - 43041360
Alignment:
Q  152 ctcaacttagcctataaatacttcgctgttgtattcagttgatgtagattgtatagcacacatct 216  Q
    ||||||||||||||||| ||||| ||| ||||||||||||||| |||||||||||||||||||||    
T  43041296 ctcaacttagcctataagtacttagcttttgtattcagttgatatagattgtatagcacacatct 43041360  T

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Target: chr8; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 152 - 216
Target Start/End: Original strand, 43039404 - 43039468
Alignment:
Q  152 ctcaacttagcctataaatacttcgctgttgtattcagttgatgtagattgtatagcacacatct 216  Q
    ||||||||||||||||| |||||  || ||||||||||||||| |||||||||||||||||||||    
T  43039404 ctcaacttagcctataagtacttatcttttgtattcagttgatatagattgtatagcacacatct 43039468  T

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Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 23 - 62
Target Start/End: Original strand, 43039320 - 43039359
Alignment:
Q  23 tcttgttgaagtataattcatattctaatgttagttagta 62  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  43039320 tcttgttgaagtataattcatattctaatgttagttagta 43039359  T

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Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 26 - 79
Target Start/End: Original strand, 43041178 - 43041231
Alignment:
Q  26 tgttgaagtataattcatattctaatgttagttagtagaggataaatccaacta 79  Q
    ||||||||||||||||||||||||||||||||||||   ||||| |||||||||    
T  43041178 tgttgaagtataattcatattctaatgttagttagttatggatagatccaacta 43041231  T

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Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 152 - 216
Target Start/End: Original strand, 28028040 - 28028104
Alignment:
Q  152 ctcaacttagcctataaatacttcgctgttgtattcagttgatgtagattgtatagcacacatct 216  Q
    ||||||||||||||||| ||||| ||| ||||||||||||||| |||||||||||||||||||||    
T  28028040 ctcaacttagcctataagtacttagcttttgtattcagttgatatagattgtatagcacacatct 28028104  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 26 - 79
Target Start/End: Original strand, 28027941 - 28027994
Alignment:
Q  26 tgttgaagtataattcatattctaatgttagttagtagaggataaatccaacta 79  Q
    |||||||||||||||||||||||||||||||||||| | |||||||||||||||    
T  28027941 tgttgaagtataattcatattctaatgttagttagttgtggataaatccaacta 28027994  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 153 - 216
Target Start/End: Complemental strand, 33413844 - 33413781
Alignment:
Q  153 tcaacttagcctataaatacttcgctgttgtattcagttgatgtagattgtatagcacacatct 216  Q
    |||||||| ||||||| ||||| ||| |||||||||||||||  ||||||||||||||||||||    
T  33413844 tcaacttaacctataagtacttagcttttgtattcagttgatacagattgtatagcacacatct 33413781  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 79
Target Start/End: Complemental strand, 33413970 - 33413918
Alignment:
Q  25 ttgttgaagtataattcatattctaatgttagttagtagaggataaatccaacta 79  Q
    ||||||||||||||||||||||||||  |||||||||   |||||||||||||||    
T  33413970 ttgttgaagtataattcatattctaa--ttagttagttatggataaatccaacta 33413918  T

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Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 26 - 79
Target Start/End: Original strand, 53611216 - 53611269
Alignment:
Q  26 tgttgaagtataattcatattctaatgttagttagtagaggataaatccaacta 79  Q
    |||||||||||||||||||||||||||||||||||| | |||||||||||||||    
T  53611216 tgttgaagtataattcatattctaatgttagttagttgtggataaatccaacta 53611269  T

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Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 26 - 79
Target Start/End: Original strand, 3584473 - 3584526
Alignment:
Q  26 tgttgaagtataattcatattctaatgttagttagtagaggataaatccaacta 79  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||| ||||||    
T  3584473 tgttgaagtataattcatattctaatgttagtttgtagaggataaattcaacta 3584526  T

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Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 26 - 79
Target Start/End: Original strand, 31477942 - 31477995
Alignment:
Q  26 tgttgaagtataattcatattctaatgttagttagtagaggataaatccaacta 79  Q
    |||||||||||||||||||||||||||||||||||| | |||||||||||||||    
T  31477942 tgttgaagtataattcatattctaatgttagttagttgtggataaatccaacta 31477995  T

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Target: chr1; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 26 - 79
Target Start/End: Original strand, 38206825 - 38206878
Alignment:
Q  26 tgttgaagtataattcatattctaatgttagttagtagaggataaatccaacta 79  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||    
T  38206825 tgttgaagtataattaatattctaatgttagttagtagaggataaattcaacta 38206878  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 61
Target Start/End: Complemental strand, 496799 - 496764
Alignment:
Q  26 tgttgaagtataattcatattctaatgttagttagt 61  Q
    ||||||||||| ||||||||||||||||||||||||    
T  496799 tgttgaagtattattcatattctaatgttagttagt 496764  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 57
Target Start/End: Original strand, 31798778 - 31798810
Alignment:
Q  25 ttgttgaagtataattcatattctaatgttagt 57  Q
    ||||||||||||||||||||||||||| |||||    
T  31798778 ttgttgaagtataattcatattctaatattagt 31798810  T

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