View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1441_low_144 (Length: 229)
Name: NF1441_low_144
Description: NF1441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1441_low_144 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 20 - 229
Target Start/End: Original strand, 42630160 - 42630369
Alignment:
| Q |
20 |
gacagacccattgttatctgaaggagcaacttgtttcacaggttcctccacttcctcattgttctctttcacagccaaaaccatcaaaactaacaataag |
119 |
Q |
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| T |
42630160 |
gacagacccattgttatctgaaggagcaacttgtttgacaggttcctccacttcctcattgctctctttcacagccaaaaccatcaaaactaacaataag |
42630259 |
T |
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| Q |
120 |
ggatagcttaatgtagttagtacccaattcacaatcaactgtgccattggagacacgttatggttatcaatttgccatgcaactgcagcccccgcactct |
219 |
Q |
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| T |
42630260 |
ggatagcttaatgtagttagtacccaattgacaatcaactgtgccattggagacacgttatggttatcaatttgccatgcaactgcagcccccgcactct |
42630359 |
T |
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| Q |
220 |
gtattccttt |
229 |
Q |
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|||||||||| |
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| T |
42630360 |
gtattccttt |
42630369 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 77 - 229
Target Start/End: Original strand, 42637103 - 42637255
Alignment:
| Q |
77 |
attgttctctttcacagccaaaaccatcaaaactaacaataagggatagcttaatgtagttagtacccaattcacaatcaactgtgccattggagacacg |
176 |
Q |
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||||| |||||||||| |||||| ||| ||||| |||||||| |||||||||| |||||| || |||||||||||||||||||||| ||||||||| || |
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| T |
42637103 |
attgtcctctttcacaaccaaaatcattaaaaccaacaataacggatagcttagtgtagtgagcacccaattcacaatcaactgtgtcattggagataca |
42637202 |
T |
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| Q |
177 |
ttatggttatcaatttgccatgcaactgcagcccccgcactctgtattccttt |
229 |
Q |
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| T |
42637203 |
ttgtggttatcaatttgccatgcaactgcagcccccgcactctgtatcccttt |
42637255 |
T |
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