View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1441_low_162 (Length: 201)

Name: NF1441_low_162
Description: NF1441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1441_low_162
NF1441_low_162
[»] chr5 (16 HSPs)
chr5 (12-186)||(30072044-30072218)
chr5 (87-186)||(24517295-24517394)
chr5 (101-186)||(12340089-12340173)
chr5 (102-186)||(17382110-17382194)
chr5 (102-186)||(25594767-25594851)
chr5 (69-155)||(22229731-22229818)
chr5 (102-186)||(17027483-17027567)
chr5 (102-186)||(24841709-24841793)
chr5 (102-180)||(18222449-18222527)
chr5 (101-170)||(25075328-25075397)
chr5 (101-170)||(25133297-25133366)
chr5 (79-186)||(22967917-22968025)
chr5 (77-186)||(15205575-15205683)
chr5 (101-156)||(22754903-22754958)
chr5 (101-186)||(16622742-16622826)
chr5 (81-173)||(26070409-26070501)
[»] chr2 (12 HSPs)
chr2 (79-180)||(21505220-21505322)
chr2 (79-180)||(35707735-35707837)
chr2 (78-186)||(25473968-25474077)
chr2 (123-186)||(16593827-16593890)
chr2 (102-187)||(32619598-32619683)
chr2 (102-186)||(28278498-28278581)
chr2 (109-174)||(1733063-1733128)
chr2 (125-186)||(30998750-30998811)
chr2 (79-186)||(32276588-32276696)
chr2 (78-180)||(18236383-18236486)
chr2 (102-149)||(31914045-31914092)
chr2 (124-178)||(21844712-21844766)
[»] chr8 (11 HSPs)
chr8 (90-180)||(12956432-12956523)
chr8 (79-180)||(16052358-16052460)
chr8 (108-186)||(14977182-14977260)
chr8 (102-180)||(24120187-24120265)
chr8 (79-180)||(13082018-13082120)
chr8 (79-174)||(16054226-16054322)
chr8 (102-186)||(28901415-28901499)
chr8 (79-176)||(29047401-29047499)
chr8 (102-180)||(32239243-32239321)
chr8 (106-179)||(6358658-6358731)
chr8 (104-178)||(26882365-26882440)
[»] chr3 (17 HSPs)
chr3 (108-186)||(33914637-33914715)
chr3 (79-186)||(25919539-25919647)
chr3 (101-180)||(1475361-1475441)
chr3 (78-180)||(19219292-19219395)
chr3 (101-180)||(12573244-12573324)
chr3 (101-180)||(13549708-13549788)
chr3 (109-186)||(21017840-21017917)
chr3 (113-177)||(10341763-10341827)
chr3 (113-180)||(10303427-10303494)
chr3 (108-186)||(13911227-13911305)
chr3 (78-174)||(17637034-17637131)
chr3 (127-187)||(8402624-8402684)
chr3 (146-177)||(2729702-2729733)
chr3 (123-186)||(11521117-11521180)
chr3 (77-186)||(25883033-25883143)
chr3 (101-186)||(12409413-12409498)
chr3 (80-179)||(25188691-25188791)
[»] chr7 (14 HSPs)
chr7 (102-186)||(29544475-29544559)
chr7 (101-186)||(22067881-22067967)
chr7 (79-178)||(20446171-20446271)
chr7 (102-186)||(20470885-20470969)
chr7 (91-178)||(7815267-7815355)
chr7 (91-180)||(315129-315219)
chr7 (102-178)||(7142054-7142130)
chr7 (79-174)||(21471729-21471825)
chr7 (134-180)||(1255294-1255340)
chr7 (108-186)||(23124863-23124940)
chr7 (121-185)||(9385463-9385527)
chr7 (102-150)||(19140085-19140133)
chr7 (102-150)||(20739484-20739532)
chr7 (102-186)||(21545874-21545957)
[»] chr1 (15 HSPs)
chr1 (102-186)||(23223367-23223451)
chr1 (76-180)||(50047110-50047215)
chr1 (79-186)||(12423989-12424097)
chr1 (79-186)||(8247732-8247840)
chr1 (101-176)||(21451900-21451976)
chr1 (108-186)||(12810284-12810362)
chr1 (102-180)||(26657432-26657510)
chr1 (102-186)||(30675439-30675524)
chr1 (90-169)||(30781703-30781783)
chr1 (123-186)||(24903370-24903433)
chr1 (102-180)||(25730652-25730729)
chr1 (102-180)||(18301084-18301164)
chr1 (102-178)||(11770077-11770153)
chr1 (102-176)||(25266430-25266503)
chr1 (109-186)||(34381671-34381748)
[»] chr4 (13 HSPs)
chr4 (100-186)||(5906795-5906881)
chr4 (109-185)||(34864367-34864443)
chr4 (102-178)||(1696652-1696726)
chr4 (109-186)||(12111407-12111482)
chr4 (102-186)||(1676370-1676454)
chr4 (102-186)||(1682898-1682982)
chr4 (75-186)||(25315306-25315418)
chr4 (80-186)||(9783058-9783165)
chr4 (87-187)||(22119586-22119687)
chr4 (102-178)||(18897947-18898023)
chr4 (102-153)||(25050173-25050224)
chr4 (109-155)||(15192166-15192212)
chr4 (123-171)||(5125581-5125629)
[»] scaffold0171 (1 HSPs)
scaffold0171 (102-186)||(6152-6236)
[»] chr6 (9 HSPs)
chr6 (102-169)||(15576254-15576321)
chr6 (81-186)||(30355260-30355366)
chr6 (79-174)||(15574857-15574953)
chr6 (123-186)||(13759526-13759589)
chr6 (106-187)||(14924491-14924572)
chr6 (102-180)||(16527852-16527924)
chr6 (109-180)||(16387329-16387400)
chr6 (102-174)||(12972471-12972543)
chr6 (123-179)||(32930554-32930610)
[»] scaffold0002 (1 HSPs)
scaffold0002 (78-155)||(446936-447014)
[»] scaffold0188 (1 HSPs)
scaffold0188 (106-151)||(27064-27109)
[»] scaffold0386 (2 HSPs)
scaffold0386 (79-177)||(8793-8892)
scaffold0386 (109-179)||(13153-13223)


Alignment Details
Target: chr5 (Bit Score: 167; Significance: 1e-89; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 12 - 186
Target Start/End: Original strand, 30072044 - 30072218
Alignment:
Q  12 attattcttaccatgtcattttacatcttcctctaaatcgataactacaaacctccaccttgcatattgatgacggaacatcatgtgttattttggctat 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30072044 attattcttaccatgtcattttacatcttcctctaaatcgataactacaaacctccaccttgcatattgatgacggaacatcatgtgttattttggctat 30072143  T
Q  112 gttttaagtacttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggtttgatgaaca 186  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||    
T  30072144 gttttaagtacttttctttggatttgaagacaaataagatgagaattagaggagttgtcaatggtttgaggaaca 30072218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 87 - 186
Target Start/End: Original strand, 24517295 - 24517394
Alignment:
Q  87 gaacatcatgtgttattttggctatgttttaagtacttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggtttgatgaaca 186  Q
    |||||| | ||| |||||| | |||||||| ||| |||| ||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |||||    
T  24517295 gaacattaagtgatattttagttatgtttttagttctttgctttgcatttgaagacaaataagatgagaattagaggagttgtcaatggtttgaggaaca 24517394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 101 - 186
Target Start/End: Complemental strand, 12340173 - 12340089
Alignment:
Q  101 attttggctatgttttaagtacttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggtttgatgaaca 186  Q
    |||||||||||||||| |||| ||||||||| ||||||||||||||||| ||||| ||| |||||||||||||||||||| |||||    
T  12340173 attttggctatgtttttagta-ttttctttgcatttgaagacaaataaggtgagagttagaggagttgtcaatggtttgaggaaca 12340089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 102 - 186
Target Start/End: Complemental strand, 17382194 - 17382110
Alignment:
Q  102 ttttggctatgttttaagtacttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggtttgatgaaca 186  Q
    |||| ||||||| || ||||||||| |||| ||||||||||||||||||||||| ||| |||||||||||||||||||| |||||    
T  17382194 tttttgctatgtgtttagtacttttttttgcatttgaagacaaataagatgagagttagaggagttgtcaatggtttgaggaaca 17382110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 102 - 186
Target Start/End: Complemental strand, 25594851 - 25594767
Alignment:
Q  102 ttttggctatgttttaagtacttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggtttgatgaaca 186  Q
    ||||||||||||||| ||||||||| |||| ||||||||||||||||||||||| ||| |||| || |||||||||||| |||||    
T  25594851 ttttggctatgtttttagtacttttatttgcatttgaagacaaataagatgagagttagaggatttctcaatggtttgaggaaca 25594767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 69 - 155
Target Start/End: Original strand, 22229731 - 22229818
Alignment:
Q  69 ccttgcatattgatgacggaacatcatgtgttattttggctatgtttta-agtacttttctttggatttgaagacaaataagatgaga 155  Q
    ||||| || |||||||| || |||||| ||| ||||||||||||||||  |||||||||||||| |||||||||||||||||||||||    
T  22229731 ccttggatgttgatgacagagcatcatatgtcattttggctatgttttttagtacttttctttgcatttgaagacaaataagatgaga 22229818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 102 - 186
Target Start/End: Original strand, 17027483 - 17027567
Alignment:
Q  102 ttttggctatgttttaagtacttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggtttgatgaaca 186  Q
    ||||||||||||||| |||||||||||||| |||| ||||||| |||||||||| ||| ||| || ||||| ||||||| |||||    
T  17027483 ttttggctatgtttttagtacttttctttgcatttaaagacaattaagatgagagttagaggcgtggtcaagggtttgaggaaca 17027567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 102 - 186
Target Start/End: Original strand, 24841709 - 24841793
Alignment:
Q  102 ttttggctatgttttaagtacttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggtttgatgaaca 186  Q
    |||| |||||||||| |||||| ||||||| ||||||||||||||||| | |||  || ||||||| |||||||||||| |||||    
T  24841709 tttttgctatgtttttagtactattctttgcatttgaagacaaataagtttagagatagaggagttttcaatggtttgaggaaca 24841793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 102 - 180
Target Start/End: Original strand, 18222449 - 18222527
Alignment:
Q  102 ttttggctatgttttaagtacttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggtttga 180  Q
    |||| ||||| |||| |||| |||| |||  ||||||||||||||||||||||| ||| | ||||||||||||||||||    
T  18222449 ttttagctatatttttagtatttttatttctatttgaagacaaataagatgagagttagatgagttgtcaatggtttga 18222527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 101 - 170
Target Start/End: Complemental strand, 25075397 - 25075328
Alignment:
Q  101 attttggctatgttttaagtacttttctttggatttgaagacaaataagatgagaattataggagttgtc 170  Q
    |||||||||||||||| |||| ||||||||| | |||||||||||||| || ||| ||| ||||||||||    
T  25075397 attttggctatgtttttagtaattttctttgcacttgaagacaaataatattagagttagaggagttgtc 25075328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 101 - 170
Target Start/End: Complemental strand, 25133366 - 25133297
Alignment:
Q  101 attttggctatgttttaagtacttttctttggatttgaagacaaataagatgagaattataggagttgtc 170  Q
    |||||||||||||||| |||| ||||||||| | |||||||||||||| || ||| ||| ||||||||||    
T  25133366 attttggctatgtttttagtaattttctttgcacttgaagacaaataatattagagttagaggagttgtc 25133297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 79 - 186
Target Start/End: Complemental strand, 22968025 - 22967917
Alignment:
Q  79 tgatgacggaacatcatgtgttatttt-ggctatgttttaagtacttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggtt 177  Q
    ||||||||||  ||||| || |||||| ||||||||||| |||| ||||||||| || | |||||||||||||||    ||| ||||||||| |||||||    
T  22968025 tgatgacggagtatcatatgatattttaggctatgtttttagtagttttctttgcatgttaagacaaataagatggattttagaggagttgtgaatggtt 22967926  T
Q  178 tgatgaaca 186  Q
    ||| |||||    
T  22967925 tgaggaaca 22967917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 77 - 186
Target Start/End: Original strand, 15205575 - 15205683
Alignment:
Q  77 attgatgacggaacatcatgtgttattttggctatgttttaagtacttttc-tttggatttgaagacaaataagatgagaattataggagttgtcaatgg 175  Q
    ||||||||| || |||||| || ||||||| ||||||||| |||| ||||  |||| |||| || ||||||||||||||  ||| ||||||||||| |||    
T  15205575 attgatgacagagcatcatatgatattttgactatgtttttagtattttttatttgcatttaaatacaaataagatgag--ttaaaggagttgtcagtgg 15205672  T
Q  176 tttgatgaaca 186  Q
    ||||| |||||    
T  15205673 tttgaggaaca 15205683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 101 - 156
Target Start/End: Original strand, 22754903 - 22754958
Alignment:
Q  101 attttggctatgttttaagtacttttctttggatttgaagacaaataagatgagaa 156  Q
    ||||||| |||||||| ||||| |||||||| |||| |||||||||||||||||||    
T  22754903 attttggatatgtttttagtacgtttctttgcatttaaagacaaataagatgagaa 22754958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 101 - 186
Target Start/End: Complemental strand, 16622826 - 16622742
Alignment:
Q  101 attttggctatgttttaagtacttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggtttgatgaaca 186  Q
    ||||| |||||||||| |||| |||| |||  ||||||||||||||| ||  ||| ||| |||||||||||||||||||| |||||    
T  16622826 attttagctatgtttttagtattttt-tttacatttgaagacaaatacgaaaagagttaaaggagttgtcaatggtttgaggaaca 16622742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 173
Target Start/End: Original strand, 26070409 - 26070501
Alignment:
Q  81 atgacggaacatcatgtgttattttggctatgttttaagtacttttctttggatttgaagacaaataagatgagaattataggagttgtcaat 173  Q
    |||| |||||||||| || | ||||||||||||||| |||  ||||||||| |||| ||| ||||||||| |  | ||| |||||||||||||    
T  26070409 atgatggaacatcatatgattttttggctatgtttttagttattttctttgcattttaaggcaaataagaggtcatttagaggagttgtcaat 26070501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 3e-25; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 79 - 180
Target Start/End: Complemental strand, 21505322 - 21505220
Alignment:
Q  79 tgatgacggaacatcatgtgttatttt-ggctatgttttaagtacttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggtt 177  Q
    |||||||||| |||||| || |||||| ||||||||||| |||| ||||||||| ||||||||||||||||||||||| ||| || ||||||||||||||    
T  21505322 tgatgacggagcatcatatgatatttttggctatgtttttagtatttttctttgcatttgaagacaaataagatgagagttagagtagttgtcaatggtt 21505223  T
Q  178 tga 180  Q
    |||    
T  21505222 tga 21505220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 79 - 180
Target Start/End: Original strand, 35707735 - 35707837
Alignment:
Q  79 tgatgacggaacatcatgtgttattttggctatgttttaagtactttt-ctttggatttgaagacaaataagatgagaattataggagttgtcaatggtt 177  Q
    ||||||| || |||||| ||  |||||| ||||||||| ||||||||| ||||| ||||||||||||||||||||||| ||| || ||||||||||||||    
T  35707735 tgatgacagagcatcatatgacattttgactatgtttttagtactttttctttgtatttgaagacaaataagatgagagttagagaagttgtcaatggtt 35707834  T
Q  178 tga 180  Q
    |||    
T  35707835 tga 35707837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 78 - 186
Target Start/End: Original strand, 25473968 - 25474077
Alignment:
Q  78 ttgatgacggaacatcatgtgttattttggctatgttttaagtac-ttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggt 176  Q
    |||||||| || |||||| ||  |||||||||||||||| ||||| |||| |||  ||||||||||||||||||||||| ||| ||||||||||||| ||    
T  25473968 ttgatgacagagcatcatatgacattttggctatgtttttagtacattttattttcatttgaagacaaataagatgagagttagaggagttgtcaattgt 25474067  T
Q  177 ttgatgaaca 186  Q
    |||| |||||    
T  25474068 ttgaggaaca 25474077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 123 - 186
Target Start/End: Complemental strand, 16593890 - 16593827
Alignment:
Q  123 ttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggtttgatgaaca 186  Q
    |||| |||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||    
T  16593890 ttttttttgcatttgaagacaaataagattagagttataggagttgtcaatggtttgatgaaca 16593827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 102 - 187
Target Start/End: Original strand, 32619598 - 32619683
Alignment:
Q  102 ttttggctatgttttaagtacttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggtttgatgaacaa 187  Q
    |||||||||| |||| |||||||||||||| ||||||||||||||||  |||||  || ||||||||| ||||||| || ||||||    
T  32619598 ttttggctatatttttagtacttttctttgcatttgaagacaaataacttgagagatagaggagttgttaatggttagaggaacaa 32619683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 102 - 186
Target Start/End: Complemental strand, 28278581 - 28278498
Alignment:
Q  102 ttttggctatgttttaagtacttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggtttgatgaaca 186  Q
    |||| ||||||||||| ||||||||||||| |||||||| ||||||||| |||| ||| |||| || |||||||||||| |||||    
T  28278581 tttttgctatgtttta-gtacttttctttgcatttgaaggcaaataagaagagagttagaggatttctcaatggtttgaagaaca 28278498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 109 - 174
Target Start/End: Original strand, 1733063 - 1733128
Alignment:
Q  109 tatgttttaagtacttttctttggatttgaagacaaataagatgagaattataggagttgtcaatg 174  Q
    |||||||| ||||||||| |||  |||||||||||||| |||||||| ||| ||||||||||||||    
T  1733063 tatgtttttagtactttttttttcatttgaagacaaatgagatgagagttagaggagttgtcaatg 1733128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 125 - 186
Target Start/End: Original strand, 30998750 - 30998811
Alignment:
Q  125 ttctttggatttgaagacaaataagatgagaattataggagttgtcaatggtttgatgaaca 186  Q
    |||||||  |||||||||||||||||||||| ||| | |||||||||||||||||| |||||    
T  30998750 ttctttgcctttgaagacaaataagatgagagttagatgagttgtcaatggtttgaggaaca 30998811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 186
Target Start/End: Complemental strand, 32276696 - 32276588
Alignment:
Q  79 tgatgacggaacatcatgtgtta-ttttggctatgttttaagtacttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggtt 177  Q
    |||||| |||||||||| || || |||||| |||||||| |||  ||||||||| ||||||||  |||||||| |  | ||| ||||| |||||||||||    
T  32276696 tgatgaaggaacatcatatggtacttttggatatgtttttagttattttctttgcatttgaaggaaaataagaggtcatttaaaggagatgtcaatggtt 32276597  T
Q  178 tgatgaaca 186  Q
    ||| |||||    
T  32276596 tgaagaaca 32276588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 78 - 180
Target Start/End: Complemental strand, 18236486 - 18236383
Alignment:
Q  78 ttgatgacggaacatcatgtgttattttg-gctatgttttaagtacttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggt 176  Q
    ||||||||||| |||||| || ||||||  |||||||||| |||  ||||||||| |||||||| |||| ||  ||  | |||||| |||||||||||||    
T  18236486 ttgatgacggagcatcatatgatattttatgctatgtttttagttattttctttgcatttgaaggcaaagaaattgtaatttatagaagttgtcaatggt 18236387  T
Q  177 ttga 180  Q
    ||||    
T  18236386 ttga 18236383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 102 - 149
Target Start/End: Complemental strand, 31914092 - 31914045
Alignment:
Q  102 ttttggctatgttttaagtacttttctttggatttgaagacaaataag 149  Q
    |||| |||||||||| |||| ||||||||| |||||||||||||||||    
T  31914092 tttttgctatgtttttagtatttttctttgcatttgaagacaaataag 31914045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 178
Target Start/End: Complemental strand, 21844766 - 21844712
Alignment:
Q  124 tttctttggatttgaagacaaataagatgagaattataggagttgtcaatggttt 178  Q
    |||||||| ||||||||||||||||| ||  | ||| ||||||||||||||||||    
T  21844766 tttctttgcatttgaagacaaataagttgtaatttagaggagttgtcaatggttt 21844712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 2e-23; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 90 - 180
Target Start/End: Original strand, 12956432 - 12956523
Alignment:
Q  90 catcatgtgttattttgg-ctatgttttaagtacttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggtttga 180  Q
    ||||||||| |||||| | ||||||||| |||||||||||||| ||||||||| ||||||||||||| ||| ||||||||||||||||||||    
T  12956432 catcatgtgatatttttgtctatgtttttagtacttttctttgcatttgaagataaataagatgagagttagaggagttgtcaatggtttga 12956523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 79 - 180
Target Start/End: Complemental strand, 16052460 - 16052358
Alignment:
Q  79 tgatgacggaacatcatgtgttatttt-ggctatgttttaagtacttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggtt 177  Q
    |||||||||| |||||| || |||||| ||||||||||| ||||||||| |||| |||||| ||||||||| |||||| ||| |||||||||||||||||    
T  16052460 tgatgacggagcatcatatgatatttttggctatgtttttagtacttttatttgcatttgaggacaaataaaatgagagttagaggagttgtcaatggtt 16052361  T
Q  178 tga 180  Q
    |||    
T  16052360 tga 16052358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 108 - 186
Target Start/End: Complemental strand, 14977260 - 14977182
Alignment:
Q  108 ctatgttttaagtacttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggtttgatgaaca 186  Q
    ||||||||| || ||||||||||| |||| |||||||||||||||||| ||| |||||||||||||||||||| |||||    
T  14977260 ctatgtttttagcacttttctttgcattttaagacaaataagatgagagttagaggagttgtcaatggtttgaggaaca 14977182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 102 - 180
Target Start/End: Original strand, 24120187 - 24120265
Alignment:
Q  102 ttttggctatgttttaagtacttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggtttga 180  Q
    |||| |||||||||| |||||||||||||| ||||||||| ||||||||||||| ||| |||||||||||| |||||||    
T  24120187 tttttgctatgtttttagtacttttctttgcatttgaagagaaataagatgagagttagaggagttgtcaacggtttga 24120265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 79 - 180
Target Start/End: Complemental strand, 13082120 - 13082018
Alignment:
Q  79 tgatgacggaacatcatgtgttattttggctatgttttaagtactttt-ctttggatttgaagacaaataagatgagaattataggagttgtcaatggtt 177  Q
    |||||||  |||||||| ||  ||||||  |||||||| ||||||||| ||||| ||||||||||||||||||||||| ||| |||||||||||||| ||    
T  13082120 tgatgacaaaacatcatatgacattttgattatgtttttagtactttttctttgcatttgaagacaaataagatgagagttagaggagttgtcaatgatt 13082021  T
Q  178 tga 180  Q
    |||    
T  13082020 tga 13082018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 79 - 174
Target Start/End: Original strand, 16054226 - 16054322
Alignment:
Q  79 tgatgacggaacatcatgtgttattttggctatgttttaagtactttt-ctttggatttgaagacaaataagatgagaattataggagttgtcaatg 174  Q
    ||||||| || |||||| ||  ||||||||||||| || ||||||||| ||||| ||||||||||||||||||| ||| ||| ||||||||||||||    
T  16054226 tgatgacagagcatcatatgacattttggctatgtctttagtactttttctttgcatttgaagacaaataagataagagttagaggagttgtcaatg 16054322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 102 - 186
Target Start/End: Complemental strand, 28901499 - 28901415
Alignment:
Q  102 ttttggctatgttttaagtacttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggtttgatgaaca 186  Q
    ||||||||||| ||| | |||||||||||| ||||||| ||||||||| |||||  || |||||||||||||||||||| |||||    
T  28901499 ttttggctatgcttttaatacttttctttgcatttgaatacaaataagttgagagatagaggagttgtcaatggtttgaggaaca 28901415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 79 - 176
Target Start/End: Complemental strand, 29047499 - 29047401
Alignment:
Q  79 tgatgacggaacatcatgtgttattttggctatgttttaagtactttt-ctttggatttgaagacaaataagatgagaattataggagttgtcaatggt 176  Q
    ||||||| || |||||| || || ||||||||| || | ||||||||| ||||| ||||||| ||||||||||||||| ||| ||||||||||||||||    
T  29047499 tgatgacagagcatcatatgataatttggctatattattagtactttttctttgcatttgaaaacaaataagatgagagttagaggagttgtcaatggt 29047401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 102 - 180
Target Start/End: Original strand, 32239243 - 32239321
Alignment:
Q  102 ttttggctatgttttaagtacttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggtttga 180  Q
    ||||||||||||||| || ||||||||||  ||||||||| | ||||||| | ||||| ||||||||||||||||||||    
T  32239243 ttttggctatgtttttagcacttttctttacatttgaagatagataagataataattagaggagttgtcaatggtttga 32239321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 106 - 179
Target Start/End: Original strand, 6358658 - 6358731
Alignment:
Q  106 ggctatgttttaagtacttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggtttg 179  Q
    ||||||||||| ||||||||| |||| ||||||||||| ||||| |||||  || ||||||||| |||||||||    
T  6358658 ggctatgtttttagtacttttatttgcatttgaagacatataagttgagagatagaggagttgttaatggtttg 6358731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 104 - 178
Target Start/End: Original strand, 26882365 - 26882440
Alignment:
Q  104 ttggctatgttttaagtactttt-ctttggatttgaagacaaataagatgagaattataggagttgtcaatggttt 178  Q
    ||||||||||||| ||||||||| ||| | | | |||||||||||| |||||| ||| |||||||| |||||||||    
T  26882365 ttggctatgtttttagtactttttcttcgcaatcgaagacaaataaaatgagatttaaaggagttgccaatggttt 26882440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 8e-23; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 108 - 186
Target Start/End: Complemental strand, 33914715 - 33914637
Alignment:
Q  108 ctatgttttaagtacttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggtttgatgaaca 186  Q
    ||||||||| |||||||||||||| |||| |||||||||||||||||| |||||||||||||||| ||||||| |||||    
T  33914715 ctatgtttttagtacttttctttgcatttcaagacaaataagatgagagttataggagttgtcaacggtttgaggaaca 33914637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 79 - 186
Target Start/End: Complemental strand, 25919647 - 25919539
Alignment:
Q  79 tgatgacggaacatcatgtgttattt-tggctatgttttaagtacttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggtt 177  Q
    |||||| ||| |||||| || ||||| ||| |||||||| ||||| |||||||| ||||||||||||||||||||||| ||| | || ||||||||||||    
T  25919647 tgatgatggagcatcatatgatatttctggttatgtttttagtacatttctttgaatttgaagacaaataagatgagagttagatgatttgtcaatggtt 25919548  T
Q  178 tgatgaaca 186  Q
    ||| |||||    
T  25919547 tgaggaaca 25919539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 101 - 180
Target Start/End: Complemental strand, 1475441 - 1475361
Alignment:
Q  101 attttggctatgttttaagtactttt-ctttggatttgaagacaaataagatgagaattataggagttgtcaatggtttga 180  Q
    |||||||||||||||| ||||||||| ||||| |||||||| | |||||||||||| ||| ||||||| ||||||||||||    
T  1475441 attttggctatgtttttagtactttttctttgcatttgaagtctaataagatgagagttagaggagttttcaatggtttga 1475361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 78 - 180
Target Start/End: Complemental strand, 19219395 - 19219292
Alignment:
Q  78 ttgatgacggaacatcatgtgtta-ttttggctatgttttaagtacttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggt 176  Q
    ||||||||| | |||||| || || |||| ||| |||||| |||| |||||||||  |||||||| ||||||||||||| |||| |||||||||||||||    
T  19219395 ttgatgacgaagcatcatatgatacttttagctgtgtttttagtatttttctttgcttttgaagataaataagatgagagttattggagttgtcaatggt 19219296  T
Q  177 ttga 180  Q
    ||||    
T  19219295 ttga 19219292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 101 - 180
Target Start/End: Original strand, 12573244 - 12573324
Alignment:
Q  101 attttggctatgttttaagtactttt-ctttggatttgaagacaaataagatgagaattataggagttgtcaatggtttga 180  Q
    ||||||| |||||||| ||||||||| ||||| ||| ||||||||||||||||||| ||| | || |||||||||||||||    
T  12573244 attttggttatgtttttagtactttttctttgcattagaagacaaataagatgagagttagatgatttgtcaatggtttga 12573324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 101 - 180
Target Start/End: Original strand, 13549708 - 13549788
Alignment:
Q  101 attttggctatgttttaagtactttt-ctttggatttgaagacaaataagatgagaattataggagttgtcaatggtttga 180  Q
    ||||||| |||||||| ||||||||| ||||| ||| ||||||||||||||||||| ||| | || |||||||||||||||    
T  13549708 attttggttatgtttttagtactttttctttgcattagaagacaaataagatgagagttagatgatttgtcaatggtttga 13549788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 109 - 186
Target Start/End: Original strand, 21017840 - 21017917
Alignment:
Q  109 tatgttttaagtacttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggtttgatgaaca 186  Q
    |||||||| |||| ||||||||| ||||||||| ||||||||||||| ||| |||||||| ||||  ||||| |||||    
T  21017840 tatgtttttagtatttttctttgcatttgaagaaaaataagatgagagttagaggagttggcaataatttgaggaaca 21017917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 113 - 177
Target Start/End: Original strand, 10341763 - 10341827
Alignment:
Q  113 ttttaagtacttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggtt 177  Q
    |||| ||||||||||| || |||||||  ||||||||||| |||||| |||||||||||||||||    
T  10341763 tttttagtacttttctctgcatttgaaatcaaataagatgtgaattagaggagttgtcaatggtt 10341827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 113 - 180
Target Start/End: Original strand, 10303427 - 10303494
Alignment:
Q  113 ttttaagtacttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggtttga 180  Q
    |||| ||||||||||| |  |||||||  ||||||||||| |||||| ||||||||||||||||||||    
T  10303427 tttttagtacttttctctacatttgaaatcaaataagatgtgaattagaggagttgtcaatggtttga 10303494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 108 - 186
Target Start/End: Original strand, 13911227 - 13911305
Alignment:
Q  108 ctatgttttaagtacttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggtttgatgaaca 186  Q
    ||||||||| |||| ||||||||| |||||||||||| ||||  ||||  || | |||||||||||||||||| |||||    
T  13911227 ctatgtttttagtaattttctttgtatttgaagacaagtaagtagagagatagaagagttgtcaatggtttgaggaaca 13911305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 78 - 174
Target Start/End: Original strand, 17637034 - 17637131
Alignment:
Q  78 ttgatgacggaacatcatgtgttatttt-ggctatgttttaagtacttttctttggatttgaagacaaataagatgagaattataggagttgtcaatg 174  Q
    ||||||||||| |||||| ||  ||||| ||||||||||  | |||||||||||| | || |||||||||||||| ||||| | ||||||||| ||||    
T  17637034 ttgatgacggagcatcatatgacatttttggctatgtttatattacttttctttgtaattaaagacaaataagataagaataagaggagttgtaaatg 17637131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 187
Target Start/End: Complemental strand, 8402684 - 8402624
Alignment:
Q  127 ctttggatttgaagacaaataagatgagaattataggagttgtcaatggtttgatgaacaa 187  Q
    ||||| |||||||| |||||||||||  | ||| |||||||||||||||||||| ||||||    
T  8402684 ctttgcatttgaaggcaaataagatgtaatttagaggagttgtcaatggtttgaggaacaa 8402624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 146 - 177
Target Start/End: Complemental strand, 2729733 - 2729702
Alignment:
Q  146 taagatgagaattataggagttgtcaatggtt 177  Q
    ||||||||||||||||||||||||||||||||    
T  2729733 taagatgagaattataggagttgtcaatggtt 2729702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 123 - 186
Target Start/End: Original strand, 11521117 - 11521180
Alignment:
Q  123 ttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggtttgatgaaca 186  Q
    ||||| ||| ||||||||| ||||||||||||  ||  |||||||||||||||||||| |||||    
T  11521117 ttttcattgcatttgaagaaaaataagatgagcgttggaggagttgtcaatggtttgaggaaca 11521180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 186
Target Start/End: Original strand, 25883033 - 25883143
Alignment:
Q  77 attgatgacggaacatcatgtgttattttggctatgttttaagtactttt-ctttggatttgaagacaaataagatgagaattataggagttgtcaatgg 175  Q
    ||||||||| || |||||| || || ||||||||| |||  ||||||||| | ||| ||||||||| ||||||||||||| | | | |||||||||||      
T  25883033 attgatgacagagcatcatatgatactttggctatatttctagtactttttcattgcatttgaagaaaaataagatgagagtcagaagagttgtcaattt 25883132  T
Q  176 tttgatgaaca 186  Q
    ||||| |||||    
T  25883133 tttgaggaaca 25883143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 101 - 186
Target Start/End: Original strand, 12409413 - 12409498
Alignment:
Q  101 attttggctatgttttaagtacttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggtttgatgaaca 186  Q
    |||||| |||| |||| ||||||||| |||| ||||||||| ||||||  || ||  || | |||||||||||||||||| |||||    
T  12409413 attttgactatatttttagtacttttatttgtatttgaagaaaaataacttgggagataaaagagttgtcaatggtttgaagaaca 12409498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 179
Target Start/End: Original strand, 25188691 - 25188791
Alignment:
Q  80 gatgacggaacatcatgtgttattttggctatgttttaagt-acttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggttt 178  Q
    ||||||||| |||||| || ||||| |||||| |||| | | | ||||||||| |||||||||||||||||| |  | ||| |||| ||| |||||||||    
T  25188691 gatgacggatcatcatatgatatttaggctatatttttacttatttttctttgcatttgaagacaaataagaggtcatttagaggaattgacaatggttt 25188790  T
Q  179 g 179  Q
    |    
T  25188791 g 25188791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 1e-21; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 102 - 186
Target Start/End: Original strand, 29544475 - 29544559
Alignment:
Q  102 ttttggctatgttttaagtacttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggtttgatgaaca 186  Q
    ||||||||||||||| | || ||||||||| ||||||||||||||||||||||| ||| ||||||||||||| |||||| |||||    
T  29544475 ttttggctatgtttttattaattttctttgcatttgaagacaaataagatgagagttagaggagttgtcaatagtttgaggaaca 29544559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 101 - 186
Target Start/End: Complemental strand, 22067967 - 22067881
Alignment:
Q  101 attttggctatgttttaagtacttttc-tttggatttgaagacaaataagatgagaattataggagttgtcaatggtttgatgaaca 186  Q
    |||||||||||||||| |||| ||||  |||| ||||||||||||||||||||||| ||| |||||||||||||||||||| |||||    
T  22067967 attttggctatgtttttagtaatttttatttgcatttgaagacaaataagatgagagttaaaggagttgtcaatggtttgaggaaca 22067881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 79 - 178
Target Start/End: Original strand, 20446171 - 20446271
Alignment:
Q  79 tgatgacggaacatcatgtgttattttggctatgttttaagtactttt-ctttggatttgaagacaaataagatgagaattataggagttgtcaatggtt 177  Q
    ||||||| || || ||| || |||||| |||||||||| | ||||||| ||||| |||||||||||| |||||||||||||| |||||||||||||||||    
T  20446171 tgatgacagagcaacatatgatattttagctatgtttttaatactttttctttgcatttgaagacaattaagatgagaattagaggagttgtcaatggtt 20446270  T
Q  178 t 178  Q
    |    
T  20446271 t 20446271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 102 - 186
Target Start/End: Complemental strand, 20470969 - 20470885
Alignment:
Q  102 ttttggctatgttttaagtacttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggtttgatgaaca 186  Q
    |||||||| |||||| ||||||||| |||  || |||||||||||||||||| ||||| |||||||||||||||||||| |||||    
T  20470969 ttttggctttgtttttagtacttttatttatatgtgaagacaaataagatgataattagaggagttgtcaatggtttgaggaaca 20470885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 91 - 178
Target Start/End: Original strand, 7815267 - 7815355
Alignment:
Q  91 atcatgtgttattttggctatgttttaagtacttttct-ttggatttgaagacaaataagatgagaattataggagttgtcaatggttt 178  Q
    ||||| || |||||||| |||||||| ||||||||| | ||| ||||||||| ||||||||||||| ||| |||| |||||||||||||    
T  7815267 atcatatgatattttggttatgtttttagtacttttttgttgcatttgaagataaataagatgagagttaaaggacttgtcaatggttt 7815355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 91 - 180
Target Start/End: Original strand, 315129 - 315219
Alignment:
Q  91 atcatgtgttattttggctatgttttaagtactttt-ctttggatttgaagacaaataagatgagaattataggagttgtcaatggtttga 180  Q
    ||||| || ||||||| |||||||||  |||||||| |||   ||||||||| ||||||||||||| ||| ||||||||||||||||||||    
T  315129 atcatatgatattttgactatgttttcggtactttttcttaatatttgaagaaaaataagatgagagttagaggagttgtcaatggtttga 315219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 102 - 178
Target Start/End: Original strand, 7142054 - 7142130
Alignment:
Q  102 ttttggctatgttttaagtacttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggttt 178  Q
    ||||||||||||||| | || ||||||||| |||| |||||||||||| |||||   ||| ||||||||||||||||    
T  7142054 ttttggctatgtttttaatagttttctttgcatttaaagacaaataagttgagagagatatgagttgtcaatggttt 7142130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 79 - 174
Target Start/End: Original strand, 21471729 - 21471825
Alignment:
Q  79 tgatgacggaacatcatgtgttattttggctatgttttaagtactttt-ctttggatttgaagacaaataagatgagaattataggagttgtcaatg 174  Q
    ||||||| || |||||| ||  ||||||| |||||||| ||||||||| | ||| ||||||||||||||||||||| | ||| |||| |||||||||    
T  21471729 tgatgacagagcatcatatgccattttggttatgtttttagtactttttccttgcatttgaagacaaataagatgatatttagaggatttgtcaatg 21471825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 134 - 180
Target Start/End: Complemental strand, 1255340 - 1255294
Alignment:
Q  134 tttgaagacaaataagatgagaattataggagttgtcaatggtttga 180  Q
    |||||||||||||||| ||||| ||| ||||||||||||||||||||    
T  1255340 tttgaagacaaataagttgagagttagaggagttgtcaatggtttga 1255294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 108 - 186
Target Start/End: Original strand, 23124863 - 23124940
Alignment:
Q  108 ctatgttttaagtacttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggtttgatgaaca 186  Q
    ||||||||| |||||||| ||||  ||||||||||||||||||||||| ||| ||||||||| | |||| ||| |||||    
T  23124863 ctatgtttttagtacttt-ctttacatttgaagacaaataagatgagatttagaggagttgttagtggtctgaggaaca 23124940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 185
Target Start/End: Original strand, 9385463 - 9385527
Alignment:
Q  121 acttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggtttgatgaac 185  Q
    ||||||| ||| |||||||||||| ||||||||||  ||  |||||||| |||||||||||||||    
T  9385463 acttttccttgcatttgaagacaattaagatgagagatagtggagttgttaatggtttgatgaac 9385527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 150
Target Start/End: Complemental strand, 19140133 - 19140085
Alignment:
Q  102 ttttggctatgttttaagtacttttctttggatttgaagacaaataaga 150  Q
    |||||||||||||||||||  ||||||||| ||||||||||||| ||||    
T  19140133 ttttggctatgttttaagttattttctttgcatttgaagacaaaaaaga 19140085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 150
Target Start/End: Complemental strand, 20739532 - 20739484
Alignment:
Q  102 ttttggctatgttttaagtacttttctttggatttgaagacaaataaga 150  Q
    |||||||||||||||||||  ||||||||| ||||||||||||| ||||    
T  20739532 ttttggctatgttttaagttattttctttgcatttgaagacaaaaaaga 20739484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 186
Target Start/End: Complemental strand, 21545957 - 21545874
Alignment:
Q  102 ttttggctatgttttaagtacttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggtttgatgaaca 186  Q
    ||||| ||||||||| |||||||||||||    |||||||| || ||||||| ||||| |  ||||||||||||||||| |||||    
T  21545957 ttttgactatgtttttagtacttttcttttccattgaagac-aacaagatgataattaaataagttgtcaatggtttgaggaaca 21545874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 1e-21; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 102 - 186
Target Start/End: Original strand, 23223367 - 23223451
Alignment:
Q  102 ttttggctatgttttaagtacttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggtttgatgaaca 186  Q
    |||||||||||||||||||||||||||||| ||||  |||||| ||||||| || ||| |||||||||||||||||||| |||||    
T  23223367 ttttggctatgttttaagtacttttctttgcattttgagacaattaagatgggagttagaggagttgtcaatggtttgaggaaca 23223451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 76 - 180
Target Start/End: Original strand, 50047110 - 50047215
Alignment:
Q  76 tattgatgacggaacatcatgtgttatttt-ggctatgttttaagtacttttctttggatttgaagacaaataagatgagaattataggagttgtcaatg 174  Q
    |||||||||||||| | ||| || |||||| |||||||||||   |||||||||||| ||||||||||||||||||||| || || ||||||||||||||    
T  50047110 tattgatgacggaataccatatgatatttttggctatgtttttgatacttttctttgcatttgaagacaaataagatgaaaagtagaggagttgtcaatg 50047209  T
Q  175 gtttga 180  Q
     |||||    
T  50047210 atttga 50047215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 79 - 186
Target Start/End: Complemental strand, 12424097 - 12423989
Alignment:
Q  79 tgatgacggaacatcatgtgttattttggctatgttttaagtactttt-ctttggatttgaagacaaataagatgagaattataggagttgtcaatggtt 177  Q
    ||||||| || |||||| || ||||||||||||||||| ||||||||| ||||| |||||||||||||||||||||||   | ||| ||||| |||||||    
T  12424097 tgatgacagagcatcatatgatattttggctatgtttttagtactttttctttgcatttgaagacaaataagatgagagacagaggcgttgttaatggtt 12423998  T
Q  178 tgatgaaca 186  Q
    ||| |||||    
T  12423997 tgaggaaca 12423989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 79 - 186
Target Start/End: Complemental strand, 8247840 - 8247732
Alignment:
Q  79 tgatgacggaacatcatgtgttattttggctatgttttaagtac-ttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggtt 177  Q
    ||||||| || |||||| ||  |||||| ||||||||| | ||| ||||||||| ||||||||||||||||||||||| ||| ||||| | |||||||||    
T  8247840 tgatgacagagcatcatatgacattttgactatgtttttaataccttttctttgcatttgaagacaaataagatgagagttagaggagatatcaatggtt 8247741  T
Q  178 tgatgaaca 186  Q
    ||| |||||    
T  8247740 tgaggaaca 8247732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 101 - 176
Target Start/End: Complemental strand, 21451976 - 21451900
Alignment:
Q  101 attttggctatgttttaagtac-ttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggt 176  Q
    |||||||||||||||| ||||| ||||||||| |||||||||||||||||||||||  || | ||||||||||||||    
T  21451976 attttggctatgtttttagtacgttttctttgcatttgaagacaaataagatgagagatagaagagttgtcaatggt 21451900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 108 - 186
Target Start/End: Original strand, 12810284 - 12810362
Alignment:
Q  108 ctatgttttaagtacttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggtttgatgaaca 186  Q
    ||||||||| |||||||||||||  |||| |||||||||||| |||||  || |||||||||||||||||||| |||||    
T  12810284 ctatgtttttagtacttttctttatatttaaagacaaataagttgagagatagaggagttgtcaatggtttgaggaaca 12810362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 102 - 180
Target Start/End: Original strand, 26657432 - 26657510
Alignment:
Q  102 ttttggctatgttttaagtacttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggtttga 180  Q
    ||||| ||||||||| | |||||||||||| ||||||||||||||| | |||||  || ||||||||||||||||||||    
T  26657432 ttttgactatgtttttattacttttctttgcatttgaagacaaatatgttgagagatagaggagttgtcaatggtttga 26657510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 102 - 186
Target Start/End: Original strand, 30675439 - 30675524
Alignment:
Q  102 ttttggctatgttttaagtacttttctttgg-atttgaagacaaataagatgagaattataggagttgtcaatggtttgatgaaca 186  Q
    |||| |||||||||| || ||||||||||   ||||| ||||||||||||||| ||||| |||||||||||||||||||| |||||    
T  30675439 tttttgctatgtttttagaacttttctttttcatttgtagacaaataagatgaaaattagaggagttgtcaatggtttgaggaaca 30675524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 90 - 169
Target Start/End: Original strand, 30781703 - 30781783
Alignment:
Q  90 catcatgtgttattttggctatgttttaagtactttt-ctttggatttgaagacaaataagatgagaattataggagttgt 169  Q
    ||||||| | |||||| |||||||||| |||| |||| ||||| ||||||||||||||||||||||| ||| |||||||||    
T  30781703 catcatgcgatatttttgctatgtttttagtaatttttctttgcatttgaagacaaataagatgagagttagaggagttgt 30781783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 123 - 186
Target Start/End: Complemental strand, 24903433 - 24903370
Alignment:
Q  123 ttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggtttgatgaaca 186  Q
    ||||||||| ||||||||||||||| |||||||||||  ||||||||||||| ||||| |||||    
T  24903433 ttttctttgcatttgaagacaaatatgatgagaattagtggagttgtcaatgatttgaggaaca 24903370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 102 - 180
Target Start/End: Complemental strand, 25730729 - 25730652
Alignment:
Q  102 ttttggctatgttttaagtacttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggtttga 180  Q
    |||| ||||||||||| ||||||||||||| ||||||| ||||||||||||||| ||| ||| | ||||||||| ||||    
T  25730729 tttttgctatgtttta-gtacttttctttgcatttgaaaacaaataagatgagagttagagggggtgtcaatggcttga 25730652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 102 - 180
Target Start/End: Complemental strand, 18301164 - 18301084
Alignment:
Q  102 ttttggctatgttttaagtacttttctttggatttgaagacaa--ataagatgagaattataggagttgtcaatggtttga 180  Q
    |||| ||||||||||  ||||||||||||| ||||||||||||  | || |||||| ||||||| ||||||||||||||||    
T  18301164 ttttagctatgtttttggtacttttctttgcatttgaagacaaacaaaaaatgagagttataggggttgtcaatggtttga 18301084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 102 - 178
Target Start/End: Complemental strand, 11770153 - 11770077
Alignment:
Q  102 ttttggctatgttttaagtacttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggttt 178  Q
    ||||| ||||||||| | |||| ||||||| ||||||||| ||||||||||||| ||| || | |||||||||||||    
T  11770153 ttttgtctatgtttttaatactattctttgcatttgaagataaataagatgagagttagagaatttgtcaatggttt 11770077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 176
Target Start/End: Complemental strand, 25266503 - 25266430
Alignment:
Q  102 ttttggctatgttttaagtacttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggt 176  Q
    |||||| |||||||| |||||||||||||| ||||||||||| | ||||| |||  || || |||||||||||||    
T  25266503 ttttggttatgtttttagtacttttctttgcatttgaagacaga-aagataagagatagagaagttgtcaatggt 25266430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 109 - 186
Target Start/End: Original strand, 34381671 - 34381748
Alignment:
Q  109 tatgttttaagtacttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggtttgatgaaca 186  Q
    |||||||| | || |||| |||| |||||||| |||||||||||  | ||| ||||||||| |||||||||| |||||    
T  34381671 tatgtttttattagttttatttgcatttgaaggcaaataagatgtaatttagaggagttgttaatggtttgaagaaca 34381748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 100 - 186
Target Start/End: Complemental strand, 5906881 - 5906795
Alignment:
Q  100 tattttggctatgttttaagtacttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggtttgatgaaca 186  Q
    |||||| |||||||||| ||||||||| |||| ||||||||||||| ||||||||| ||| |||| ||||||||||||||| |||||    
T  5906881 tatttttgctatgtttttagtacttttatttgcatttgaagacaaacaagatgagagttagaggaattgtcaatggtttgaggaaca 5906795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 109 - 185
Target Start/End: Complemental strand, 34864443 - 34864367
Alignment:
Q  109 tatgttttaagtacttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggtttgatgaac 185  Q
    |||||||| |||||||||||||| ||||||||||||||||||| | | ||| |||||||||||||||||||| ||||    
T  34864443 tatgtttttagtacttttctttgtatttgaagacaaataagataaaagttagaggagttgtcaatggtttgaggaac 34864367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 102 - 178
Target Start/End: Complemental strand, 1696726 - 1696652
Alignment:
Q  102 ttttggctatgttttaagtacttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggttt 178  Q
    |||||||||| |||  ||||||||| |||  |||||||||||||||||||||||  |||||||||||||||||||||    
T  1696726 ttttggctatattt--agtacttttatttacatttgaagacaaataagatgagagatataggagttgtcaatggttt 1696652  T

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Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 109 - 186
Target Start/End: Complemental strand, 12111482 - 12111407
Alignment:
Q  109 tatgttttaagtacttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggtttgatgaaca 186  Q
    |||||||| ||||||||| |||| ||||||||||||| |||||||||| || |||||||||||||||||||| |||||    
T  12111482 tatgtttttagtacttttatttgcatttgaagacaaa-aagatgagaa-tagaggagttgtcaatggtttgaggaaca 12111407  T

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Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 102 - 186
Target Start/End: Complemental strand, 1676454 - 1676370
Alignment:
Q  102 ttttggctatgttttaagtacttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggtttgatgaaca 186  Q
    |||||| ||| ||||  ||||||||||||  ||||||||||||||||||||| |  || |||||||||||||||||||| |||||    
T  1676454 ttttggttatattttttgtacttttctttacatttgaagacaaataagatgaaagatagaggagttgtcaatggtttgaggaaca 1676370  T

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Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 102 - 186
Target Start/End: Complemental strand, 1682982 - 1682898
Alignment:
Q  102 ttttggctatgttttaagtacttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggtttgatgaaca 186  Q
    |||||| ||| ||||  ||||||||||||  ||||||||||||||||||||| |  || |||||||||||||||||||| |||||    
T  1682982 ttttggttatattttttgtacttttctttacatttgaagacaaataagatgaaagatagaggagttgtcaatggtttgaggaaca 1682898  T

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Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 75 - 186
Target Start/End: Complemental strand, 25315418 - 25315306
Alignment:
Q  75 atattgatgacggaacatcatgtgttattttggctatgtttta-agtacttttctttggatttgaagacaaataagatgagaattataggagttgtcaat 173  Q
    ||||||||||| || |||||| ||  ||||| | ||||||||  |||||||||||||  ||||||||| |||||||||||||  || |||||||||||||    
T  25315418 atattgatgaccgagcatcatatgacattttagttatgttttttagtacttttctttacatttgaagataaataagatgagagatagaggagttgtcaat 25315319  T
Q  174 ggtttgatgaaca 186  Q
    | ||||| |||||    
T  25315318 gctttgaggaaca 25315306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 80 - 186
Target Start/End: Complemental strand, 9783165 - 9783058
Alignment:
Q  80 gatgacggaacatcatgtgttattttggctatgttttaagtactttt-ctttggatttgaagacaaataagatgagaattataggagttgtcaatggttt 178  Q
    |||||| || |||||| ||  |||||| ||||||||| ||||||||| ||||  |||||||| ||||| |||||||| ||| ||||||||||||| ||||    
T  9783165 gatgacagagcatcatatgacattttgcctatgtttttagtactttttctttacatttgaaggcaaatgagatgagagttagaggagttgtcaatagttt 9783066  T
Q  179 gatgaaca 186  Q
    || |||||    
T  9783065 gaggaaca 9783058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 87 - 187
Target Start/End: Original strand, 22119586 - 22119687
Alignment:
Q  87 gaacatcatgtgttattttg-gctatgttttaagtacttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggtttgatgaac 185  Q
    ||||||||| || ||||||  |||||||||| |||  ||||||||| |||||||| ||||| ||| |  | |||||||||||||||||||||||| ||||    
T  22119586 gaacatcatatgatattttatgctatgtttttagttattttctttgcatttgaaggcaaattagaagttatttataggagttgtcaatggtttgaggaac 22119685  T
Q  186 aa 187  Q
    ||    
T  22119686 aa 22119687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 102 - 178
Target Start/End: Original strand, 18897947 - 18898023
Alignment:
Q  102 ttttggctatgttttaagtacttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggttt 178  Q
    |||||||| |||||| | |||||||||||| ||||||||||||||||| |||||  || | || |||||||||||||    
T  18897947 ttttggctgtgtttttactacttttctttgcatttgaagacaaataagttgagagatagatgatttgtcaatggttt 18898023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 102 - 153
Target Start/End: Complemental strand, 25050224 - 25050173
Alignment:
Q  102 ttttggctatgttttaagtacttttctttggatttgaagacaaataagatga 153  Q
    ||||||||||||||| |||| |||| |||| |||||||||||||||||||||    
T  25050224 ttttggctatgtttttagtatttttatttgtatttgaagacaaataagatga 25050173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 109 - 155
Target Start/End: Original strand, 15192166 - 15192212
Alignment:
Q  109 tatgttttaagtacttttctttggatttgaagacaaataagatgaga 155  Q
    ||||||||  ||||||||||||| |||||||||||||||||||||||    
T  15192166 tatgtttttcgtacttttctttgcatttgaagacaaataagatgaga 15192212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 171
Target Start/End: Original strand, 5125581 - 5125629
Alignment:
Q  123 ttttctttggatttgaagacaaataagatgagaattataggagttgtca 171  Q
    |||| |||| ||||||||||||||||||||||||||| |||| ||||||    
T  5125581 ttttttttgcatttgaagacaaataagatgagaattagaggaattgtca 5125629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 102 - 186
Target Start/End: Original strand, 6152 - 6236
Alignment:
Q  102 ttttggctatgttttaagtacttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggtttgatgaaca 186  Q
    ||||||||||||||| |||||||||||||  |||| || ||||||||||||||| ||||| ||||| |||||||||||| |||||    
T  6152 ttttggctatgtttttagtacttttctttccatttaaacacaaataagatgagagttatatgagttttcaatggtttgaggaaca 6236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 1e-18; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 102 - 169
Target Start/End: Complemental strand, 15576321 - 15576254
Alignment:
Q  102 ttttggctatgttttaagtacttttctttggatttgaagacaaataagatgagaattataggagttgt 169  Q
    ||||||||||||||| |||||||||||||| |||| |||||||||| ||||||||||| |||||||||    
T  15576321 ttttggctatgtttttagtacttttctttgaatttaaagacaaataggatgagaattagaggagttgt 15576254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 81 - 186
Target Start/End: Original strand, 30355260 - 30355366
Alignment:
Q  81 atgacggaacatcatgtgttatttt-ggctatgttttaagtacttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggtttg 179  Q
    |||||||| |||||| || |||||| ||||||||||| |||||||||  ||| ||||||||  ||||||||||||| ||| || ||||||||||||||||    
T  30355260 atgacggagcatcatatgatatttttggctatgtttttagtacttttacttgcatttgaaggtaaataagatgagagttagagaagttgtcaatggtttg 30355359  T
Q  180 atgaaca 186  Q
    || ||||    
T  30355360 ataaaca 30355366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 79 - 174
Target Start/End: Original strand, 15574857 - 15574953
Alignment:
Q  79 tgatgacggaacatcatgtgttattttggctatgttttaagtactttt-ctttggatttgaagacaaataagatgagaattataggagttgtcaatg 174  Q
    ||||||| ||||||||| ||  ||||||||||| || | ||||||||| ||||| ||||||||||||||||||||||| ||| |||| |||||||||    
T  15574857 tgatgacagaacatcatatgacattttggctatcttgttagtactttttctttgcatttgaagacaaataagatgagatttagaggaattgtcaatg 15574953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 123 - 186
Target Start/End: Complemental strand, 13759589 - 13759526
Alignment:
Q  123 ttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggtttgatgaaca 186  Q
    |||| |||| ||||||||| ||||||||||||| ||| |||||||||||||||||||| |||||    
T  13759589 ttttatttgtatttgaagataaataagatgagagttagaggagttgtcaatggtttgaggaaca 13759526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 106 - 187
Target Start/End: Complemental strand, 14924572 - 14924491
Alignment:
Q  106 ggctatgttttaagtacttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggtttgatgaacaa 187  Q
    ||||||||||| |||  ||||||||| |||||||| ||||||| |||  | ||| |||||||||||||||||||| ||||||    
T  14924572 ggctatgtttttagttattttctttgcatttgaaggcaaataatatgtaatttagaggagttgtcaatggtttgaggaacaa 14924491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 102 - 180
Target Start/End: Original strand, 16527852 - 16527924
Alignment:
Q  102 ttttggctatgttttaagtacttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggtttga 180  Q
    ||||||||||||||| ||||||||||||||      |||||||||||||||||| ||| ||||||||||  ||||||||    
T  16527852 ttttggctatgtttttagtacttttctttg------aagacaaataagatgagagttagaggagttgtcggtggtttga 16527924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 109 - 180
Target Start/End: Complemental strand, 16387400 - 16387329
Alignment:
Q  109 tatgttttaagtacttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggtttga 180  Q
    |||||||| |||| |||||||||  ||||||||| |||||||||  | ||| | ||||||||||||||||||    
T  16387400 tatgtttttagtagttttctttgtgtttgaagacgaataagatgtaatttagatgagttgtcaatggtttga 16387329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 174
Target Start/End: Complemental strand, 12972543 - 12972471
Alignment:
Q  102 ttttggctatgttttaagtacttttctttggatttgaagacaaataagatgagaattataggagttgtcaatg 174  Q
    ||||||||||||||| |||  ||||||||| |||||||| ||| ||||| |  | ||| ||||||||||||||    
T  12972543 ttttggctatgtttttagttattttctttgcatttgaaggcaactaagaggtcatttagaggagttgtcaatg 12972471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 179
Target Start/End: Complemental strand, 32930610 - 32930554
Alignment:
Q  123 ttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggtttg 179  Q
    |||| |||| |||||||| |||||||||||  | ||| |||||||||||||||||||    
T  32930610 ttttttttgcatttgaaggcaaataagatgtcatttagaggagttgtcaatggtttg 32930554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 78 - 155
Target Start/End: Original strand, 446936 - 447014
Alignment:
Q  78 ttgatgacggaacatcatgtgttattttggctatgttttaagtacttttc-tttggatttgaagacaaataagatgaga 155  Q
    |||||||| || |||||| || |||||| |||||||||| |||||||||| |||  |||||||||||||||||||||||    
T  446936 ttgatgacagagcatcatatgatatttttgctatgtttttagtacttttcctttacatttgaagacaaataagatgaga 447014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 151
Target Start/End: Complemental strand, 27109 - 27064
Alignment:
Q  106 ggctatgttttaagtacttttctttggatttgaagacaaataagat 151  Q
    ||||||||||| |||||||||||||| ||||||||| |||||||||    
T  27109 ggctatgtttttagtacttttctttgcatttgaagataaataagat 27064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0386 (Bit Score: 32; Significance: 0.000000004; HSPs: 2)
Name: scaffold0386
Description:

Target: scaffold0386; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 79 - 177
Target Start/End: Complemental strand, 8892 - 8793
Alignment:
Q  79 tgatgacggaacatcatgtgttatttt-ggctatgttttaagtacttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggtt 177  Q
    |||||| |||||||||| || |||||| || ||| |||| ||||||||| |||  |||| |||| ||||||||||||  ||| |||| ||||||||||||    
T  8892 tgatgatggaacatcatatgatatttttggttatttttttagtacttttattttcattttaagaaaaataagatgagggttagaggatttgtcaatggtt 8793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0386; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 179
Target Start/End: Complemental strand, 13223 - 13153
Alignment:
Q  109 tatgttttaagtacttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggtttg 179  Q
    |||||||| ||||||||| |||  || | |||||||||||||||||| ||| |||| || |||||||||||    
T  13223 tatgtttttagtacttttattttcatattaagacaaataagatgagagttagaggatttttcaatggtttg 13153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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