View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1441_low_18 (Length: 448)
Name: NF1441_low_18
Description: NF1441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1441_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 18 - 414
Target Start/End: Original strand, 49935786 - 49936182
Alignment:
| Q |
18 |
agacatgtatcataatcaaccgattacactccaaaatttgaatatgattagatgaaaccaccgaagatatagagtataataccacctttgatcttgatag |
117 |
Q |
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| T |
49935786 |
agacatgtatcataatcaaccgattacactccaaaatttgaatatgattagatgaaaccaccgaagatatagagtataataccacctttgatcttgatag |
49935885 |
T |
|
| Q |
118 |
aacactcggatccgtgcttcgagaaagaagccttgcaagaggaagcatctcagcaatctccgctcgacatacttcaagtttcattctccacctgcccatc |
217 |
Q |
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| T |
49935886 |
aacactcggatccgtgcttcgagaaagaagccttgcaagaggaagcatctcggcaatctccgctcgacatacttcaagtttcattctccacctgcccatc |
49935985 |
T |
|
| Q |
218 |
gaggatataacactactaagatgcccagacattagccatttcaaaatgccttcctcttttccatcattaaggttgcgatcgctggctccaggcaatacat |
317 |
Q |
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| T |
49935986 |
gaggatataacactactaagatgcccagacattagccttttcaaaatgccttcctcttttccatcattaaggttgcgatcgctggatccaggcaatacat |
49936085 |
T |
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| Q |
318 |
attcaccttgaagttcataatgactgttgctttgttcaaagataattttttcaatagtgatctgaacaatagcacatcaacagacattcagtataat |
414 |
Q |
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| T |
49936086 |
attcaccttgaagttcataatgactgttgctttgttcaaagataattttttcaatagtgatctgaacaatagcacatcaacagacattcagtataat |
49936182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 69; Significance: 8e-31; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 125 - 387
Target Start/End: Complemental strand, 1912647 - 1912385
Alignment:
| Q |
125 |
ggatccgtgcttcgagaaagaagccttgcaagaggaagcatctcagcaatctccgctcgacatacttcaagtttcattctccacctgcccatcgaggata |
224 |
Q |
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|||||| |||| |||||||||||||| |||||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||| ||||||| |
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| T |
1912647 |
ggatccatgctccgagaaagaagcctcgcaagaggaagcatctcagcaacctctgctctgggaacttcaagtttcattctccacctgcccattgaggata |
1912548 |
T |
|
| Q |
225 |
taacactactaa---gatgcccagacattagccatttcaaaatgccttcctcttttccatcattaaggttgcgatcgctggctccaggcaatacatattc |
321 |
Q |
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||||||||| || |||| || ||||||||| ||| |||| ||| |||| ||| ||| || | || ||||| | | |||||||| || ||||| |
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| T |
1912547 |
taacactaccaacgcgatgacccgacattagctttttaaaaaggcc-acctc--ctccgtcaataggattacgatctcgagtaccaggcaaaacgtattc |
1912451 |
T |
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| Q |
322 |
accttgaagttcataatgactgttgctttgttcaaagataattttttcaatagtgatctgaacaat |
387 |
Q |
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| T |
1912450 |
accttgaagttcataatagctgtggttttgttgcaaaacagttttttcaatagtgatctgaacaat |
1912385 |
T |
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