View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1441_low_2 (Length: 612)
Name: NF1441_low_2
Description: NF1441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1441_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 575; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 575; E-Value: 0
Query Start/End: Original strand, 1 - 594
Target Start/End: Complemental strand, 9408442 - 9407848
Alignment:
| Q |
1 |
cacagcataataaaaagacggaagctttcacgaagcttctcataagaccatgtgaatgaacttgattaaaagttacttacatcattcactacgtaatgct |
100 |
Q |
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| T |
9408442 |
cacagcataataaaaagatggaagctttcacgaagcttctcataagacaatgtgaatgaacttgattaaaagttacttacatcattcactacgtaatgct |
9408343 |
T |
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| Q |
101 |
gatgcactaatgaaaattaaatttcggatacgtagtaagtatagaactagaatactataatacgtagaaagtacaaaactacaattatcatactataata |
200 |
Q |
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| T |
9408342 |
gatgcactaatgaaaattaaatttcggatacgtagtaagtatagaactagaatactataatacgtagaaagtacaaaactacaattatcatactataata |
9408243 |
T |
|
| Q |
201 |
atgagttgcattaaagtgacttgtatcattgagtgttcgataattcgcacaaaaagtataaaattgctccaataattttatcggataatttaatatccaa |
300 |
Q |
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| T |
9408242 |
atgagttgcattaaagtgacttgtatcattgagtgttcgataattcgcacaaaaagtataaaattgctccaataattttatcggataatttaatatccaa |
9408143 |
T |
|
| Q |
301 |
aaattaatagttttgattatttgagaaaaagtaaatgaaataaaaaagactgacttgtaacacaatttctcctaatcatagattaataatatataacttc |
400 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9408142 |
aaattgatagttttgattatttgagaaaaagtaaatgaaataaaaaagactgacttgtaacacaatttctcctaatcatagattaataatatataacttc |
9408043 |
T |
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| Q |
401 |
aa-ttttcagttttcactctgtttggcgcagagcatcaacaattgcatccttcaatagagggtttgaagcagctacacgctgagctgatatgtcaaaatc |
499 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9408042 |
aatttttcagttttcactctgtttggcgcagagcatcaacaattgcatccttcaatagagggtttgaagcagctacacgctgagctgatatgtcaaaatc |
9407943 |
T |
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| Q |
500 |
tccaccagacctgaagcaaacaaaaacatcagatgttgatgttagtatgagatcttcccaacatatctatgaagcttcatgttttatagttttct |
594 |
Q |
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| T |
9407942 |
tccaccagacctgaagcaaacaaaaacatcagatgttgatgttagtatgagatcttcccaacatatctatgaagcttcatgttttatagttttct |
9407848 |
T |
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