View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1441_low_23 (Length: 406)
Name: NF1441_low_23
Description: NF1441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1441_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 383; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 1 - 391
Target Start/End: Complemental strand, 48365837 - 48365447
Alignment:
| Q |
1 |
accttcagccatatttgggcttctgtaataattgctaatcggtttagtggcgaggacagagtttggataatacaccttttcattattaagcttcaagaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48365837 |
accttcagccatatttgggcttctgtaataattgctaatcggtttagtggcgaggacagagtttggataatacaccttttcattattaagcttcaagaat |
48365738 |
T |
|
| Q |
101 |
actgttgtcaatatattcatttcttcaaccaatagctgccagatcattcgatgcattaatacgtgtatctcaaaacagtaaaaataaattcggctgctat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
48365737 |
actgttgtcaatatattcatttcttcaaccaatagctgccagataattcgatgcattaatacgtgaatctcaaaacagtaaaaataaattcggctgctat |
48365638 |
T |
|
| Q |
201 |
aagttacctcaacaccatctacaacacaacgatcgccaacatcgaatggatgcattacaaagacgaagatgatggcttcaaatatattcttgcacgtgtt |
300 |
Q |
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| T |
48365637 |
aagttacctcaacaccatctacaacacaacgatcgccaacatcgaatggatgcattacaaagacgaagatgatggcttcaaatatattcttgcacgtgtt |
48365538 |
T |
|
| Q |
301 |
tccaaacatgaaccccgctagtactagctgtgatgagaggaatacaagtacttttgttgttgcaatctccattagaagaagccacactact |
391 |
Q |
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| T |
48365537 |
tccaaacatgaaccccgctagtactagctgtgatgagaggaatacaagtacttttgttgttgcaatctccattagaagaagccacactact |
48365447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 4 - 389
Target Start/End: Complemental strand, 48385377 - 48384990
Alignment:
| Q |
4 |
ttcagccatatttgggcttctgtaataattgctaatcggtttagtggcgaggacagagtttggataatacaccttttcattattaagcttcaagaatact |
103 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
48385377 |
ttcaaccatatttgggcttctgtaataattgctaatcggtttagaggcgaggacagagtttggataatacaacttttcattattaagcttcaagaatact |
48385278 |
T |
|
| Q |
104 |
gttgtcaatatattcatttcttcaaccaatagctgccagatcattcgatg-cattaatacgtgtatctcaaaacagtaaaaataaattcggctgctata- |
201 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||| ||| | | |||||||||||| ||||| || || |||| |||||||||| |||| | |
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| T |
48385277 |
gttgtcaatatattcatctcttcaaccaatagctgccagataattaaaaggcattaatacgtgaatctctaa-caacaaaattaaattcggcagctacag |
48385179 |
T |
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| Q |
202 |
-agttacctcaacaccatctacaacacaacgatcgccaacatcgaatggatgcattacaaagacgaagatgatggcttcaaatatattcttgcacgtgtt |
300 |
Q |
| |
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|||||||||||||||||||| |||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||| |
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| T |
48385178 |
aagttacctcaacaccatctataacacaccgatcgccaacatcgaacggatgcattacaaacacgaagatgatggcttcaaaaatattcttgcacgtgtt |
48385079 |
T |
|
| Q |
301 |
tccaaacatgaaccccgctagtactagctgtgatgagaggaatacaagtacttttgttgttgcaatctccattagaagaagccacacta |
389 |
Q |
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|||||||||||| |||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
48385078 |
tccaaacatgaaagccgcgagtactagctgcgatgagaggaatacaagtacttttgttgtcgcaatctccattagaagaagccacacta |
48384990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 9 - 391
Target Start/End: Original strand, 48396740 - 48397124
Alignment:
| Q |
9 |
ccatatttgggcttctgtaataattgctaatcggtttagtggcgaggacagagtttggataatacaccttttcattattaagcttcaagaatactgttgt |
108 |
Q |
| |
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||||||| |||||||||||||||||||| |||||||| |||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
48396740 |
ccatattagggcttctgtaataattgctgatcggttttatggctaggacagagtttggataatacaccttttcattattaagtttcaagaatactgttgt |
48396839 |
T |
|
| Q |
109 |
caatatattcatttcttcaaccaatagctgccagatcattcg--atgcattaatacgtgtatctcaaaacagtaaaaataaattcggctgctataagtta |
206 |
Q |
| |
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|| ||| |||||||||||||||||||||||| |||| ||| ||||||||||||| || |||||||| |||| |||| ||||||||||||| ||| |
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| T |
48396840 |
cagtatgttcatttcttcaaccaatagctgcaagataattttgaatgcattaatacgcaaatatcaaaacaataaagttaaactcggctgctataaatta |
48396939 |
T |
|
| Q |
207 |
cctcaacaccatctacaacacaacgatcgccaacatcgaatggatgcattacaaagacgaagatgatggcttcaaatatattcttgcacgtgtttccaaa |
306 |
Q |
| |
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||||||||||||||| || ||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48396940 |
cctcaacaccatctataaaacatcgatcgccaacatcaaatggatgcattacaaacacgaagatgatggcttcaaatatattcttgcacgtgtttccaaa |
48397039 |
T |
|
| Q |
307 |
catgaaccccgctagtactagctgtgatgagaggaatacaagtacttttgttgttgcaatctccattagaagaagccacactact |
391 |
Q |
| |
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|||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48397040 |
catgaaagccgcaagtactagctgtgatgagaggaatacaagtacttttgttgttgcaatctccattagaagaagccacactact |
48397124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 239 - 303
Target Start/End: Original strand, 51364944 - 51365008
Alignment:
| Q |
239 |
acatcgaatggatgcattacaaagacgaagatgatggcttcaaatatattcttgcacgtgtttcc |
303 |
Q |
| |
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||||| ||||||||||||||||| | || ||||| |||||||||| | ||||||| |||||||| |
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| T |
51364944 |
acatcaaatggatgcattacaaataaaaatatgattgcttcaaatacagtcttgcatgtgtttcc |
51365008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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