View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1441_low_24 (Length: 401)

Name: NF1441_low_24
Description: NF1441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1441_low_24
NF1441_low_24
[»] chr7 (24 HSPs)
chr7 (15-389)||(40251763-40252137)
chr7 (319-388)||(26880684-26880753)
chr7 (123-229)||(33894672-33894778)
chr7 (79-113)||(3610656-3610690)
chr7 (123-217)||(25670517-25670611)
chr7 (68-112)||(19302480-19302524)
chr7 (68-116)||(20234569-20234617)
chr7 (73-117)||(35267463-35267507)
chr7 (71-111)||(43854959-43854999)
chr7 (68-118)||(3927921-3927971)
chr7 (68-114)||(5947350-5947396)
chr7 (71-109)||(7513671-7513709)
chr7 (71-108)||(753081-753118)
chr7 (71-116)||(25596144-25596189)
chr7 (68-117)||(34083520-34083569)
chr7 (71-112)||(46825212-46825253)
chr7 (66-110)||(11619077-11619121)
chr7 (78-110)||(12110486-12110518)
chr7 (123-227)||(28727684-28727788)
chr7 (71-111)||(29363620-29363660)
chr7 (79-111)||(34036037-34036069)
chr7 (74-110)||(40598404-40598440)
chr7 (80-116)||(40687873-40687909)
chr7 (68-108)||(45338562-45338602)
[»] chr4 (34 HSPs)
chr4 (68-120)||(35571540-35571592)
chr4 (68-114)||(39691064-39691110)
chr4 (125-230)||(27123270-27123375)
chr4 (68-116)||(18815132-18815180)
chr4 (68-113)||(54426152-54426197)
chr4 (73-116)||(23319965-23320008)
chr4 (68-115)||(27329990-27330037)
chr4 (125-223)||(2996620-2996718)
chr4 (123-217)||(33534100-33534194)
chr4 (72-114)||(46714906-46714948)
chr4 (72-108)||(1075571-1075607)
chr4 (119-235)||(6428059-6428175)
chr4 (69-117)||(25571369-25571417)
chr4 (71-111)||(49939869-49939909)
chr4 (136-224)||(52172783-52172871)
chr4 (71-114)||(26780-26823)
chr4 (124-167)||(1137758-1137801)
chr4 (70-109)||(23459738-23459777)
chr4 (125-195)||(23966953-23967023)
chr4 (71-113)||(38478824-38478866)
chr4 (73-110)||(4449024-4449061)
chr4 (71-116)||(29126176-29126221)
chr4 (123-163)||(9680716-9680756)
chr4 (72-116)||(21953386-21953430)
chr4 (71-115)||(22662165-22662209)
chr4 (71-115)||(22666644-22666688)
chr4 (68-116)||(24169372-24169420)
chr4 (174-234)||(25434326-25434386)
chr4 (68-116)||(27043743-27043791)
chr4 (71-103)||(30743446-30743478)
chr4 (203-235)||(35571544-35571576)
chr4 (68-116)||(42403936-42403984)
chr4 (68-116)||(44797989-44798037)
chr4 (68-112)||(55437185-55437229)
[»] chr1 (39 HSPs)
chr1 (68-114)||(2295205-2295251)
chr1 (60-117)||(37473508-37473565)
chr1 (67-115)||(14385707-14385755)
chr1 (68-116)||(15477662-15477710)
chr1 (68-114)||(37631474-37631520)
chr1 (70-103)||(1662684-1662717)
chr1 (79-116)||(2295311-2295348)
chr1 (123-236)||(10199320-10199433)
chr1 (71-116)||(21002267-21002312)
chr1 (125-230)||(32515359-32515464)
chr1 (68-117)||(38247436-38247485)
chr1 (72-112)||(6231733-6231773)
chr1 (69-117)||(41505784-41505832)
chr1 (73-108)||(9507345-9507380)
chr1 (79-114)||(14576569-14576604)
chr1 (123-218)||(31517670-31517765)
chr1 (70-108)||(22416832-22416870)
chr1 (119-165)||(29929604-29929650)
chr1 (70-108)||(32859868-32859906)
chr1 (68-114)||(43230687-43230733)
chr1 (203-241)||(43420383-43420421)
chr1 (75-120)||(4076606-4076651)
chr1 (71-116)||(10199321-10199366)
chr1 (127-184)||(27963334-27963391)
chr1 (68-116)||(29904860-29904909)
chr1 (71-112)||(30815571-30815612)
chr1 (123-172)||(31118088-31118137)
chr1 (203-236)||(34952327-34952360)
chr1 (72-109)||(42575389-42575426)
chr1 (69-113)||(473273-473317)
chr1 (71-99)||(2832084-2832112)
chr1 (81-117)||(5047268-5047304)
chr1 (68-108)||(5721034-5721074)
chr1 (68-108)||(5741715-5741755)
chr1 (77-113)||(15942663-15942699)
chr1 (80-112)||(37591551-37591583)
chr1 (126-194)||(42336663-42336731)
chr1 (123-195)||(49692005-49692077)
chr1 (71-111)||(51957314-51957354)
[»] chr6 (21 HSPs)
chr6 (125-230)||(2460069-2460174)
chr6 (47-111)||(835179-835243)
chr6 (68-116)||(35069525-35069573)
chr6 (68-110)||(4163262-4163304)
chr6 (68-110)||(4224883-4224925)
chr6 (68-117)||(848098-848146)
chr6 (71-115)||(12111079-12111123)
chr6 (70-114)||(32205928-32205972)
chr6 (78-117)||(507316-507355)
chr6 (81-116)||(30641867-30641902)
chr6 (79-117)||(24670523-24670561)
chr6 (68-113)||(103539-103584)
chr6 (71-108)||(324078-324115)
chr6 (80-121)||(2457062-2457103)
chr6 (71-116)||(25103211-25103256)
chr6 (68-121)||(31623659-31623712)
chr6 (70-115)||(35070568-35070613)
chr6 (71-103)||(31338089-31338121)
chr6 (201-233)||(31624383-31624415)
chr6 (119-167)||(34404706-34404754)
chr6 (72-104)||(34429639-34429671)
[»] chr5 (22 HSPs)
chr5 (68-112)||(16937800-16937844)
chr5 (68-116)||(7705911-7705959)
chr5 (68-117)||(25461560-25461609)
chr5 (72-116)||(11153359-11153403)
chr5 (79-115)||(41535018-41535054)
chr5 (71-114)||(6938648-6938691)
chr5 (71-110)||(36542205-36542244)
chr5 (69-111)||(1464938-1464980)
chr5 (78-111)||(6738391-6738424)
chr5 (71-108)||(10771809-10771846)
chr5 (70-111)||(17756304-17756345)
chr5 (71-112)||(25720334-25720375)
chr5 (71-112)||(26004914-26004955)
chr5 (83-116)||(41820151-41820184)
chr5 (69-105)||(3520687-3520723)
chr5 (72-116)||(8651265-8651309)
chr5 (72-116)||(9174929-9174973)
chr5 (72-108)||(11615575-11615611)
chr5 (68-116)||(12433086-12433134)
chr5 (68-116)||(40438867-40438915)
chr5 (79-111)||(42647010-42647042)
chr5 (68-116)||(43300987-43301035)
[»] chr2 (41 HSPs)
chr2 (71-113)||(33503110-33503152)
chr2 (70-116)||(2790349-2790395)
chr2 (125-191)||(34651993-34652059)
chr2 (68-117)||(15305783-15305832)
chr2 (67-120)||(42868390-42868443)
chr2 (123-232)||(44606026-44606135)
chr2 (123-195)||(787377-787449)
chr2 (80-116)||(4607046-4607082)
chr2 (83-115)||(25790248-25790280)
chr2 (71-111)||(30990357-30990397)
chr2 (85-117)||(31179196-31179228)
chr2 (85-117)||(31190461-31190493)
chr2 (68-115)||(449956-450003)
chr2 (81-116)||(7928211-7928246)
chr2 (71-114)||(15370238-15370281)
chr2 (68-111)||(18179058-18179101)
chr2 (68-123)||(20933835-20933890)
chr2 (86-117)||(31198470-31198501)
chr2 (86-117)||(31217082-31217113)
chr2 (71-110)||(43259947-43259986)
chr2 (70-116)||(9996849-9996895)
chr2 (71-117)||(29936140-29936186)
chr2 (123-165)||(30538156-30538198)
chr2 (71-117)||(35378444-35378490)
chr2 (79-116)||(3312197-3312234)
chr2 (71-116)||(10563473-10563518)
chr2 (84-117)||(11307425-11307458)
chr2 (79-120)||(31096422-31096463)
chr2 (70-111)||(33942017-33942058)
chr2 (67-120)||(39659418-39659471)
chr2 (68-117)||(42659123-42659172)
chr2 (80-117)||(44438753-44438790)
chr2 (181-233)||(2790636-2790688)
chr2 (135-235)||(4350747-4350847)
chr2 (81-117)||(14319472-14319508)
chr2 (71-111)||(15377877-15377917)
chr2 (125-229)||(19977994-19978098)
chr2 (71-103)||(25609908-25609940)
chr2 (123-227)||(40158763-40158867)
chr2 (72-112)||(41170723-41170763)
chr2 (69-113)||(45229621-45229665)
[»] scaffold0311 (1 HSPs)
scaffold0311 (123-196)||(10569-10642)
[»] chr8 (26 HSPs)
chr8 (67-116)||(30251367-30251416)
chr8 (130-230)||(16162812-16162912)
chr8 (72-115)||(16162873-16162916)
chr8 (71-113)||(43045641-43045683)
chr8 (72-116)||(9700114-9700158)
chr8 (68-116)||(29818857-29818905)
chr8 (181-229)||(33553343-33553391)
chr8 (71-102)||(12976324-12976355)
chr8 (68-111)||(36963272-36963315)
chr8 (68-115)||(38602436-38602483)
chr8 (71-113)||(7008710-7008752)
chr8 (68-110)||(9130238-9130280)
chr8 (74-116)||(31862607-31862648)
chr8 (154-216)||(31884872-31884934)
chr8 (72-118)||(35643899-35643945)
chr8 (70-116)||(41469903-41469949)
chr8 (68-109)||(1057997-1058038)
chr8 (78-111)||(10062059-10062092)
chr8 (79-108)||(11376823-11376852)
chr8 (68-117)||(15180648-15180697)
chr8 (70-119)||(29589876-29589925)
chr8 (68-109)||(40859703-40859744)
chr8 (68-117)||(43717846-43717895)
chr8 (68-116)||(10758170-10758218)
chr8 (71-115)||(20672862-20672906)
chr8 (71-115)||(31884854-31884898)
[»] chr3 (32 HSPs)
chr3 (68-117)||(39980838-39980887)
chr3 (130-230)||(44014716-44014816)
chr3 (67-110)||(20880584-20880627)
chr3 (123-198)||(31010447-31010522)
chr3 (72-115)||(44014712-44014755)
chr3 (71-117)||(41057267-41057313)
chr3 (169-231)||(49605768-49605830)
chr3 (123-196)||(41724257-41724330)
chr3 (72-117)||(53762306-53762351)
chr3 (69-109)||(584156-584196)
chr3 (71-111)||(11253613-11253653)
chr3 (68-112)||(38902174-38902218)
chr3 (81-116)||(15304281-15304316)
chr3 (72-115)||(51929854-51929897)
chr3 (82-116)||(1820045-1820079)
chr3 (69-111)||(26878310-26878352)
chr3 (68-110)||(33046717-33046759)
chr3 (79-113)||(47132436-47132470)
chr3 (72-109)||(2304191-2304228)
chr3 (68-113)||(20170630-20170675)
chr3 (68-109)||(24085258-24085299)
chr3 (80-117)||(32663759-32663796)
chr3 (84-117)||(36630963-36630996)
chr3 (125-218)||(37273181-37273274)
chr3 (68-108)||(4526298-4526338)
chr3 (203-239)||(10277254-10277290)
chr3 (71-115)||(19679242-19679286)
chr3 (68-108)||(21367776-21367816)
chr3 (203-235)||(32663763-32663795)
chr3 (71-103)||(36887638-36887670)
chr3 (125-217)||(41452570-41452662)
chr3 (117-149)||(42817221-42817253)
[»] scaffold0020 (1 HSPs)
scaffold0020 (78-115)||(159887-159924)
[»] scaffold0015 (1 HSPs)
scaffold0015 (125-229)||(68898-69002)


Alignment Details
Target: chr7 (Bit Score: 371; Significance: 0; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 15 - 389
Target Start/End: Complemental strand, 40252137 - 40251763
Alignment:
Q  15 aataagctgatagaagcttacgaaaattgtctttgttttcaaaacttctcttgaaacttatgctagtagataagctcaaataagccaattcaaacaggcc 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40252137 aataagctgatagaagcttacgaaaattgtctttgttttcaaaacttctcttgaaacttatgctagtagataagctcaaataagccaattcaaacaggcc 40252038  T
Q  115 ctatatatgctgaaaacaacttatggacatgtcatcagatgtttttataagttttctccaacactttcacaagtacttatgttaaaatataagctcaaat 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  40252037 ctatatatgctgaaaacaacttatggacatgtcatcagatgtttttataagttttctccaacacttccacaagtacttatgttaaaatataagctcaaat 40251938  T
Q  215 aagctaatccaaacagacccttgttctgttctagattctgatttgttatggtcttccttaactgacaagtttggtcccttacattcaaactttttcctta 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40251937 aagctaatccaaacagacccttgttctgttctagattctgatttgttatggtcttccttaactgacaagtttggtcccttacattcaaactttttcctta 40251838  T
Q  315 gatgtgtggcaatggagtgcgatgctttgccaaatttgtttctcagcttgagagtttacatgggaggcacaggtt 389  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40251837 gatgtgtggcaatggagtgcgatgctttgccaaatttgtttctcagcttgagagtttacatgggaggcacaggtt 40251763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 319 - 388
Target Start/End: Complemental strand, 26880753 - 26880684
Alignment:
Q  319 tgtggcaatggagtgcgatgctttgccaaatttgtttctcagcttgagagtttacatgggaggcacaggt 388  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||| | |||||||| ||||    
T  26880753 tgtggcaatggagtgcgatgctttgctaaatttgtttctcagcttgagagtttataggggaggcataggt 26880684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 123 - 229
Target Start/End: Original strand, 33894672 - 33894778
Alignment:
Q  123 gctgaaaacaacttatggacatgtcatcagatgtttttataagttttctccaacactttcacaagtacttatgttaaaatataagctcaaataagctaat 222  Q
    |||||||||||||||||||||||||||  | |||||| ||||| | || | |||| | |||||||| ||||||| |    ||||||||||||||||||||    
T  33894672 gctgaaaacaacttatggacatgtcatatgctgttttcataagctctcacaaacagtctcacaagtgcttatgtcatttgataagctcaaataagctaat 33894771  T
Q  223 ccaaaca 229  Q
    |||||||    
T  33894772 ccaaaca 33894778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 79 - 113
Target Start/End: Complemental strand, 3610690 - 3610656
Alignment:
Q  79 agtagataagctcaaataagccaattcaaacaggc 113  Q
    |||||||||||||||||||||||||||||||||||    
T  3610690 agtagataagctcaaataagccaattcaaacaggc 3610656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 123 - 217
Target Start/End: Complemental strand, 25670611 - 25670517
Alignment:
Q  123 gctgaaaacaacttatggacatgtcatcagatgtttttataagttttctccaacactttcacaagtacttatgttaaaatataagctcaaataag 217  Q
    ||||||||||| ||||  ||||||||| || |||||| |||||||||||| |||| | |||||||  ||||||| || | |||||||||| ||||    
T  25670611 gctgaaaacaatttattaacatgtcataagttgttttcataagttttctcaaacagtctcacaagagcttatgtcaatagataagctcaagtaag 25670517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 112
Target Start/End: Complemental strand, 19302524 - 19302480
Alignment:
Q  68 aaacttatgctagtagataagctcaaataagccaattcaaacagg 112  Q
    |||||||||  |||||||||||||||||||| |||||||||||||    
T  19302524 aaacttatgtcagtagataagctcaaataagtcaattcaaacagg 19302480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 116
Target Start/End: Original strand, 20234569 - 20234617
Alignment:
Q  68 aaacttatgctagtagataagctcaaataagccaattcaaacaggccct 116  Q
    |||||||||| |||| ||||||||||||||||||||| |||||| ||||    
T  20234569 aaacttatgcaagtatataagctcaaataagccaattgaaacagtccct 20234617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 117
Target Start/End: Original strand, 35267463 - 35267507
Alignment:
Q  73 tatgctagtagataagctcaaataagccaattcaaacaggcccta 117  Q
    |||| ||||||||||||||||||||| ||||||||| ||||||||    
T  35267463 tatggtagtagataagctcaaataagtcaattcaaataggcccta 35267507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 111
Target Start/End: Complemental strand, 43854999 - 43854959
Alignment:
Q  71 cttatgctagtagataagctcaaataagccaattcaaacag 111  Q
    |||||| ||||||||||| ||||||||||||||||||||||    
T  43854999 cttatgttagtagataagttcaaataagccaattcaaacag 43854959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 68 - 118
Target Start/End: Complemental strand, 3927971 - 3927921
Alignment:
Q  68 aaacttatgctagtagataagctcaaataagccaattcaaacaggccctat 118  Q
    |||||||||||||||||||  |||||||||||| || |||| |||||||||    
T  3927971 aaacttatgctagtagatagcctcaaataagccgatccaaataggccctat 3927921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 68 - 114
Target Start/End: Original strand, 5947350 - 5947396
Alignment:
Q  68 aaacttatgctagtagataagctcaaataagccaattcaaacaggcc 114  Q
    |||||||| | | ||||||||||||||||||||||| ||||||||||    
T  5947350 aaacttataccaatagataagctcaaataagccaatccaaacaggcc 5947396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 71 - 109
Target Start/End: Original strand, 7513671 - 7513709
Alignment:
Q  71 cttatgctagtagataagctcaaataagccaattcaaac 109  Q
    ||||||| |||||||||||||||||||| ||||||||||    
T  7513671 cttatgccagtagataagctcaaataagtcaattcaaac 7513709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 108
Target Start/End: Original strand, 753081 - 753118
Alignment:
Q  71 cttatgctagtagataagctcaaataagccaattcaaa 108  Q
    ||||||| |||||||||||||||||||||||| |||||    
T  753081 cttatgcaagtagataagctcaaataagccaaatcaaa 753118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 116
Target Start/End: Original strand, 25596144 - 25596189
Alignment:
Q  71 cttatgctagtagataagctcaaataagccaattcaaacaggccct 116  Q
    |||||||| ||||||||||||||||||| || | ||||||||||||    
T  25596144 cttatgctggtagataagctcaaataagtcagtccaaacaggccct 25596189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 117
Target Start/End: Complemental strand, 34083569 - 34083520
Alignment:
Q  68 aaacttatgctagtagataagctcaaataagccaattcaaacaggcccta 117  Q
    |||||||||| ||||||| |||||||||||| |||| |||||| ||||||    
T  34083569 aaacttatgcaagtagatgagctcaaataagtcaatccaaacatgcccta 34083520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 112
Target Start/End: Original strand, 46825212 - 46825253
Alignment:
Q  71 cttatgctagtagataagctcaaataagccaattcaaacagg 112  Q
    |||||| |||| |||||| |||||||||||||||||||||||    
T  46825212 cttatggtagtcgataagttcaaataagccaattcaaacagg 46825253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 66 - 110
Target Start/End: Complemental strand, 11619121 - 11619077
Alignment:
Q  66 tgaaacttatgctagtagataagctcaaataagccaattcaaaca 110  Q
    |||| ||||||  ||||||||||||||||||||||||| ||||||    
T  11619121 tgaagcttatgtcagtagataagctcaaataagccaatccaaaca 11619077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 110
Target Start/End: Original strand, 12110486 - 12110518
Alignment:
Q  78 tagtagataagctcaaataagccaattcaaaca 110  Q
    |||||||||| ||||||||||||||||||||||    
T  12110486 tagtagataaactcaaataagccaattcaaaca 12110518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 123 - 227
Target Start/End: Complemental strand, 28727788 - 28727684
Alignment:
Q  123 gctgaaaacaacttatggacatgtcatcagatgtttttataagttttctccaacactttcacaagtacttatgttaaaatataagctcaaataagctaat 222  Q
    |||||||||||| || | ||||||||| ||  ||||  ||||| | |||| |||| | || ||||| |||| || |||| ||||||||||||||| ||||    
T  28727788 gctgaaaacaacatacgaacatgtcataagccgtttccataagctctctcaaacagtctcgcaagttcttaggtcaaaagataagctcaaataagttaat 28727689  T
Q  223 ccaaa 227  Q
    |||||    
T  28727688 ccaaa 28727684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 71 - 111
Target Start/End: Original strand, 29363620 - 29363660
Alignment:
Q  71 cttatgctagtagataagctcaaataagccaattcaaacag 111  Q
    |||||| ||||||||||| |||||||||||||| |||||||    
T  29363620 cttatgttagtagataagttcaaataagccaatccaaacag 29363660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 79 - 111
Target Start/End: Original strand, 34036037 - 34036069
Alignment:
Q  79 agtagataagctcaaataagccaattcaaacag 111  Q
    |||||||||||||||||||| ||||||||||||    
T  34036037 agtagataagctcaaataagtcaattcaaacag 34036069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 110
Target Start/End: Complemental strand, 40598440 - 40598404
Alignment:
Q  74 atgctagtagataagctcaaataagccaattcaaaca 110  Q
    ||||||||||||||||||||||||| |||| ||||||    
T  40598440 atgctagtagataagctcaaataagtcaatccaaaca 40598404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 80 - 116
Target Start/End: Original strand, 40687873 - 40687909
Alignment:
Q  80 gtagataagctcaaataagccaattcaaacaggccct 116  Q
    |||||||||||||||||||| |||||||| |||||||    
T  40687873 gtagataagctcaaataagcaaattcaaataggccct 40687909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 68 - 108
Target Start/End: Original strand, 45338562 - 45338602
Alignment:
Q  68 aaacttatgctagtagataagctcaaataagccaattcaaa 108  Q
    |||||||||||||| ||||| ||||||||||||||| ||||    
T  45338562 aaacttatgctagtggataaactcaaataagccaatccaaa 45338602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 68 - 120
Target Start/End: Complemental strand, 35571592 - 35571540
Alignment:
Q  68 aaacttatgctagtagataagctcaaataagccaattcaaacaggccctatat 120  Q
    |||||||||||||||||||||||||||||||||||| ||||||| ||||||||    
T  35571592 aaacttatgctagtagataagctcaaataagccaatccaaacagaccctatat 35571540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 68 - 114
Target Start/End: Complemental strand, 39691110 - 39691064
Alignment:
Q  68 aaacttatgctagtagataagctcaaataagccaattcaaacaggcc 114  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||    
T  39691110 aaacttatgctagtagataagctcaaataagtcaattcaaacaggcc 39691064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 125 - 230
Target Start/End: Complemental strand, 27123375 - 27123270
Alignment:
Q  125 tgaaaacaacttatggacatgtcatcagatgtttttataagttttctccaacactttcacaagtacttatgttaaaatataagctcaaataagctaatcc 224  Q
    |||||||||||||  |||||||||| || |||||  ||||| | |||| |||| | ||||||||||||||| ||   |||||||||||||||| ||||||    
T  27123375 tgaaaacaacttaaagacatgtcataagttgtttccataagctctctcaaacagtctcacaagtacttatgctagtttataagctcaaataagttaatcc 27123276  T
Q  225 aaacag 230  Q
    ||||||    
T  27123275 aaacag 27123270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 68 - 116
Target Start/End: Original strand, 18815132 - 18815180
Alignment:
Q  68 aaacttatgctagtagataagctcaaataagccaattcaaacaggccct 116  Q
    |||||||||||||||| ||||||||||||||||||| ||||||||||||    
T  18815132 aaacttatgctagtaggtaagctcaaataagccaatccaaacaggccct 18815180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 68 - 113
Target Start/End: Original strand, 54426152 - 54426197
Alignment:
Q  68 aaacttatgctagtagataagctcaaataagccaattcaaacaggc 113  Q
    |||||||||| ||||||||||||||||||||||||| |||||||||    
T  54426152 aaacttatgccagtagataagctcaaataagccaatccaaacaggc 54426197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 73 - 116
Target Start/End: Original strand, 23319965 - 23320008
Alignment:
Q  73 tatgctagtagataagctcaaataagccaattcaaacaggccct 116  Q
    ||||||||||||||| ||||||||||||||| ||||||||||||    
T  23319965 tatgctagtagataatctcaaataagccaatccaaacaggccct 23320008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 68 - 115
Target Start/End: Complemental strand, 27330037 - 27329990
Alignment:
Q  68 aaacttatgctagtagataagctcaaataagccaattcaaacaggccc 115  Q
    |||||||||  |||||||||||| ||||||||||||||||||||||||    
T  27330037 aaacttatgtaagtagataagcttaaataagccaattcaaacaggccc 27329990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 125 - 223
Target Start/End: Original strand, 2996620 - 2996718
Alignment:
Q  125 tgaaaacaacttatggacatgtcatcagatgtttttataagttttctccaacactttcacaagtacttatgttaaaatataagctcaaataagctaatc 223  Q
    |||||| | |||||||||||||||| || |||||| ||||| | |||| |||| | ||| |||| ||||||| || | ||||| |||||||||||||||    
T  2996620 tgaaaaaagcttatggacatgtcataagttgttttcataagctctctcaaacagtctcaaaagtgcttatgtcaataaataagttcaaataagctaatc 2996718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 123 - 217
Target Start/End: Complemental strand, 33534194 - 33534100
Alignment:
Q  123 gctgaaaacaacttatggacatgtcatcagatgtttttataagttttctccaacactttcacaagtacttatgttaaaatataagctcaaataag 217  Q
    ||||||||||||||||||| ||||||  |  |||||| ||||| | |||| || ||| |||||||||||||||| |  | |||||||||||||||    
T  33534194 gctgaaaacaacttatggatatgtcacaatttgttttcataagctctctcaaatactctcacaagtacttatgtcactagataagctcaaataag 33534100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 114
Target Start/End: Complemental strand, 46714948 - 46714906
Alignment:
Q  72 ttatgctagtagataagctcaaataagccaattcaaacaggcc 114  Q
    |||||| |||||||||| |||||||||||||||||||||||||    
T  46714948 ttatgccagtagataagttcaaataagccaattcaaacaggcc 46714906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 108
Target Start/End: Original strand, 1075571 - 1075607
Alignment:
Q  72 ttatgctagtagataagctcaaataagccaattcaaa 108  Q
    |||||| ||||||||||||||||||||||||||||||    
T  1075571 ttatgccagtagataagctcaaataagccaattcaaa 1075607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 235
Target Start/End: Original strand, 6428059 - 6428175
Alignment:
Q  119 atatgctgaaaacaacttatggacatgtcatcagatgtttttataagttttctccaacactttcacaagtacttatgttaaaatataagctcaaataagc 218  Q
    ||||||| ||| ||||||||||||||||||| || |||||| ||||  | |||| |||  | |||||||| |||||   || |||||||||||||||||     
T  6428059 atatgcttaaatcaacttatggacatgtcataagttgttttcataatctctctcaaactgtctcacaagtgcttataccaatatataagctcaaataagt 6428158  T
Q  219 taatccaaacagaccct 235  Q
     ||| |||||| |||||    
T  6428159 caattcaaacaaaccct 6428175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 117
Target Start/End: Original strand, 25571369 - 25571417
Alignment:
Q  69 aacttatgctagtagataagctcaaataagccaattcaaacaggcccta 117  Q
    ||||||||  ||||||||| ||||||||||||||| |||||||||||||    
T  25571369 aacttatgtcagtagataaactcaaataagccaatccaaacaggcccta 25571417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 111
Target Start/End: Complemental strand, 49939909 - 49939869
Alignment:
Q  71 cttatgctagtagataagctcaaataagccaattcaaacag 111  Q
    |||||||||||||||||||| ||||||||||||| ||||||    
T  49939909 cttatgctagtagataagcttaaataagccaattgaaacag 49939869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 224
Target Start/End: Original strand, 52172783 - 52172871
Alignment:
Q  136 tatggacatgtcatcagatgtttttataagttttctccaacactttcacaagtacttatgttaaaatataagctcaaataagctaatcc 224  Q
    |||| ||||||||| || |||||| |||||||||| |||||| | |||||| ||||||||  |  || ||||||||||||||| |||||    
T  52172783 tatgaacatgtcataagctgttttcataagttttccccaacagtctcacaaatacttatgccagtatgtaagctcaaataagccaatcc 52172871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 71 - 114
Target Start/End: Complemental strand, 26823 - 26780
Alignment:
Q  71 cttatgctagtagataagctcaaataagccaattcaaacaggcc 114  Q
    ||||||| ||| ||||||||||||||||||||| ||||||||||    
T  26823 cttatgccagttgataagctcaaataagccaatccaaacaggcc 26780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 124 - 167
Target Start/End: Original strand, 1137758 - 1137801
Alignment:
Q  124 ctgaaaacaacttatggacatgtcatcagatgtttttataagtt 167  Q
    |||||||||||||||| ||||||||| ||||||||| |||||||    
T  1137758 ctgaaaacaacttatgaacatgtcataagatgttttcataagtt 1137801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 70 - 109
Target Start/End: Original strand, 23459738 - 23459777
Alignment:
Q  70 acttatgctagtagataagctcaaataagccaattcaaac 109  Q
    ||||||||||||||||||||||||||| |||||| |||||    
T  23459738 acttatgctagtagataagctcaaatatgccaatccaaac 23459777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 125 - 195
Target Start/End: Complemental strand, 23967023 - 23966953
Alignment:
Q  125 tgaaaacaacttatggacatgtcatcagatgtttttataagttttctccaacactttcacaagtacttatg 195  Q
    |||||||||||||||  |||||  | | |||||||||||| || |||| |||| |||||||||||||||||    
T  23967023 tgaaaacaacttatgagcatgttttgaaatgtttttataaattctctcaaacagtttcacaagtacttatg 23966953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 71 - 113
Target Start/End: Original strand, 38478824 - 38478866
Alignment:
Q  71 cttatgctagtagataagctcaaataagccaattcaaacaggc 113  Q
    ||||||| |||||||| |||||||||||||||| |||||||||    
T  38478824 cttatgccagtagatatgctcaaataagccaatccaaacaggc 38478866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 110
Target Start/End: Complemental strand, 4449061 - 4449024
Alignment:
Q  73 tatgctagtagataagctcaaataagccaattcaaaca 110  Q
    |||| ||||||||||||||||||||| |||||||||||    
T  4449061 tatgttagtagataagctcaaataaggcaattcaaaca 4449024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 116
Target Start/End: Complemental strand, 29126221 - 29126176
Alignment:
Q  71 cttatgctagtagataagctcaaataagccaattcaaacaggccct 116  Q
    |||||||  |||||||||||||||||||||||| |||||| |||||    
T  29126221 cttatgccggtagataagctcaaataagccaatccaaacaagccct 29126176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 123 - 163
Target Start/End: Original strand, 9680716 - 9680756
Alignment:
Q  123 gctgaaaacaacttatggacatgtcatcagatgtttttata 163  Q
    |||||||||||||||||||||| |||| || ||||||||||    
T  9680716 gctgaaaacaacttatggacatatcataagctgtttttata 9680756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 72 - 116
Target Start/End: Original strand, 21953386 - 21953430
Alignment:
Q  72 ttatgctagtagataagctcaaataagccaattcaaacaggccct 116  Q
    |||||||| |||||||||||||||||| |||| ||||||| ||||    
T  21953386 ttatgctactagataagctcaaataagtcaatccaaacagaccct 21953430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 71 - 115
Target Start/End: Complemental strand, 22662209 - 22662165
Alignment:
Q  71 cttatgctagtagataagctcaaataagccaattcaaacaggccc 115  Q
    |||||| |||||||||| |||||||||| |||| |||||||||||    
T  22662209 cttatgttagtagataaactcaaataagtcaatccaaacaggccc 22662165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 71 - 115
Target Start/End: Complemental strand, 22666688 - 22666644
Alignment:
Q  71 cttatgctagtagataagctcaaataagccaattcaaacaggccc 115  Q
    |||||| |||||||||| |||||||||| |||| |||||||||||    
T  22666688 cttatgttagtagataaactcaaataagtcaatccaaacaggccc 22666644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 68 - 116
Target Start/End: Original strand, 24169372 - 24169420
Alignment:
Q  68 aaacttatgctagtagataagctcaaataagccaattcaaacaggccct 116  Q
    |||||||||| ||||||||| ||| ||||||||||| |||||| |||||    
T  24169372 aaacttatgccagtagataaactctaataagccaatccaaacaagccct 24169420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 174 - 234
Target Start/End: Complemental strand, 25434386 - 25434326
Alignment:
Q  174 aacactttcacaagtacttatgttaaaatataagctcaaataagctaatccaaacagaccc 234  Q
    |||| |||||||||| ||||| |||  |||||||||||||||||| || |||| |||||||    
T  25434386 aacagtttcacaagtgcttattttagcatataagctcaaataagccaaaccaaccagaccc 25434326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 68 - 116
Target Start/End: Complemental strand, 27043791 - 27043743
Alignment:
Q  68 aaacttatgctagtagataagctcaaataagccaattcaaacaggccct 116  Q
    |||||||||  |||||||||||||||||||| |||| ||||||| ||||    
T  27043791 aaacttatgtcagtagataagctcaaataagtcaatccaaacagaccct 27043743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 71 - 103
Target Start/End: Original strand, 30743446 - 30743478
Alignment:
Q  71 cttatgctagtagataagctcaaataagccaat 103  Q
    |||||||||||| ||||||||||||||||||||    
T  30743446 cttatgctagtacataagctcaaataagccaat 30743478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 203 - 235
Target Start/End: Complemental strand, 35571576 - 35571544
Alignment:
Q  203 ataagctcaaataagctaatccaaacagaccct 235  Q
    |||||||||||||||| ||||||||||||||||    
T  35571576 ataagctcaaataagccaatccaaacagaccct 35571544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 68 - 116
Target Start/End: Complemental strand, 42403984 - 42403936
Alignment:
Q  68 aaacttatgctagtagataagctcaaataagccaattcaaacaggccct 116  Q
    |||||||||  ||| |||||||||||||||| |||| ||||||||||||    
T  42403984 aaacttatgtcagttgataagctcaaataagtcaatccaaacaggccct 42403936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 68 - 116
Target Start/End: Original strand, 44797989 - 44798037
Alignment:
Q  68 aaacttatgctagtagataagctcaaataagccaattcaaacaggccct 116  Q
    |||||||||  |||||||||||| |||| ||||||| ||||||||||||    
T  44797989 aaacttatgtcagtagataagcttaaatcagccaatccaaacaggccct 44798037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 68 - 112
Target Start/End: Original strand, 55437185 - 55437229
Alignment:
Q  68 aaacttatgctagtagataagctcaaataagccaattcaaacagg 112  Q
    |||||||||  ||||||||| ||||||||||||||| ||||||||    
T  55437185 aaacttatggcagtagataaactcaaataagccaatccaaacagg 55437229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 39)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 68 - 114
Target Start/End: Original strand, 2295205 - 2295251
Alignment:
Q  68 aaacttatgctagtagataagctcaaataagccaattcaaacaggcc 114  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||    
T  2295205 aaacttatgccagtagataagctcaaataagccaattcaaacaggcc 2295251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 60 - 117
Target Start/End: Original strand, 37473508 - 37473565
Alignment:
Q  60 ttctcttgaaacttatgctagtagataagctcaaataagccaattcaaacaggcccta 117  Q
    |||||| |||||||||||  |||||||| ||||||||||||||| |||||||||||||    
T  37473508 ttctctcgaaacttatgcccgtagataatctcaaataagccaatccaaacaggcccta 37473565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 67 - 115
Target Start/End: Complemental strand, 14385755 - 14385707
Alignment:
Q  67 gaaacttatgctagtagataagctcaaataagccaattcaaacaggccc 115  Q
    ||||||||||| ||||||||||||||||||||||||| | |||||||||    
T  14385755 gaaacttatgccagtagataagctcaaataagccaatccgaacaggccc 14385707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 68 - 116
Target Start/End: Original strand, 15477662 - 15477710
Alignment:
Q  68 aaacttatgctagtagataagctcaaataagccaattcaaacaggccct 116  Q
    |||||||||| ||||||||||||| ||||||||||| ||||||||||||    
T  15477662 aaacttatgcaagtagataagctctaataagccaatccaaacaggccct 15477710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 68 - 114
Target Start/End: Complemental strand, 37631520 - 37631474
Alignment:
Q  68 aaacttatgctagtagataagctcaaataagccaattcaaacaggcc 114  Q
    |||||||||||| ||||| ||||||||||||||||| ||||||||||    
T  37631520 aaacttatgctaatagatgagctcaaataagccaatccaaacaggcc 37631474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 70 - 103
Target Start/End: Original strand, 1662684 - 1662717
Alignment:
Q  70 acttatgctagtagataagctcaaataagccaat 103  Q
    ||||||||||||||||||||||||||||||||||    
T  1662684 acttatgctagtagataagctcaaataagccaat 1662717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 79 - 116
Target Start/End: Original strand, 2295311 - 2295348
Alignment:
Q  79 agtagataagctcaaataagccaattcaaacaggccct 116  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  2295311 agtagataagctcaaataagccaatccaaacaggccct 2295348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 123 - 236
Target Start/End: Complemental strand, 10199433 - 10199320
Alignment:
Q  123 gctgaaaacaacttatggacatgtcatcagatgtttttataagttttctccaacactttcacaagtacttatgttaaaatataagctcaaataagctaat 222  Q
    ||||||||||||||||| ||||||||| || | |||| || |||| || | || | | |||||||| |||||||||  | |||||||||||||||  |||    
T  10199433 gctgaaaacaacttatgaacatgtcataagctattttcatgagttctcccaaatagtgtcacaagtgcttatgttagtagataagctcaaataagtcaat 10199334  T
Q  223 ccaaacagaccctt 236  Q
    |||| ||| |||||    
T  10199333 ccaaccaggccctt 10199320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 71 - 116
Target Start/End: Original strand, 21002267 - 21002312
Alignment:
Q  71 cttatgctagtagataagctcaaataagccaattcaaacaggccct 116  Q
    ||||||| ||||||||||||||||||||||||| |||||| |||||    
T  21002267 cttatgcaagtagataagctcaaataagccaatccaaacaagccct 21002312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 125 - 230
Target Start/End: Complemental strand, 32515464 - 32515359
Alignment:
Q  125 tgaaaacaacttatggacatgtcatcagatgtttttataagttttctccaacactttcacaagtacttatgttaaaatataagctcaaataagctaatcc 224  Q
    |||||||||||||| ||||||||||  | |||||  ||||| | || | |||| | |||||||| |||||||||  | |||| |||||||| ||||||||    
T  32515464 tgaaaacaacttattgacatgtcatacgctgtttccataagctctcccaaacagtctcacaagtgcttatgttagtagataaactcaaatatgctaatcc 32515365  T
Q  225 aaacag 230  Q
    ||||||    
T  32515364 aaacag 32515359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 68 - 117
Target Start/End: Original strand, 38247436 - 38247485
Alignment:
Q  68 aaacttatgctagtagataagctcaaataagccaattcaaacaggcccta 117  Q
    |||||||||| |||||||||| |||||||| ||||| |||||||||||||    
T  38247436 aaacttatgccagtagataagttcaaataacccaatccaaacaggcccta 38247485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 112
Target Start/End: Complemental strand, 6231773 - 6231733
Alignment:
Q  72 ttatgctagtagataagctcaaataagccaattcaaacagg 112  Q
    |||||||||||||||| ||||||||| ||||||||||||||    
T  6231773 ttatgctagtagataacctcaaataaaccaattcaaacagg 6231733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 117
Target Start/End: Original strand, 41505784 - 41505832
Alignment:
Q  69 aacttatgctagtagataagctcaaataagccaattcaaacaggcccta 117  Q
    ||||||||  ||||||||||||||||||||||||| |||||| ||||||    
T  41505784 aacttatgtcagtagataagctcaaataagccaatccaaacaagcccta 41505832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 73 - 108
Target Start/End: Original strand, 9507345 - 9507380
Alignment:
Q  73 tatgctagtagataagctcaaataagccaattcaaa 108  Q
    ||||||||||||||||||||||||||| ||||||||    
T  9507345 tatgctagtagataagctcaaataagcaaattcaaa 9507380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 79 - 114
Target Start/End: Complemental strand, 14576604 - 14576569
Alignment:
Q  79 agtagataagctcaaataagccaattcaaacaggcc 114  Q
    ||||||||||||||||||||||||| ||||||||||    
T  14576604 agtagataagctcaaataagccaatccaaacaggcc 14576569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 123 - 218
Target Start/End: Complemental strand, 31517765 - 31517670
Alignment:
Q  123 gctgaaaacaacttatggacatgtcatcagatgtttttataagttttctccaacactttcacaagtacttatgttaaaatataagctcaaataagc 218  Q
    |||||||||| |||||| ||||||||| || |||||| ||||||| || | |||| | |||||||| ||||||  |  | ||||||||||||||||    
T  31517765 gctgaaaacagcttatgaacatgtcatgagttgttttgataagttctcccaaacagtctcacaagtgcttatgccagtaaataagctcaaataagc 31517670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 70 - 108
Target Start/End: Complemental strand, 22416870 - 22416832
Alignment:
Q  70 acttatgctagtagataagctcaaataagccaattcaaa 108  Q
    |||||||| ||||||||||||||||||||||||| ||||    
T  22416870 acttatgccagtagataagctcaaataagccaatccaaa 22416832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 119 - 165
Target Start/End: Complemental strand, 29929650 - 29929604
Alignment:
Q  119 atatgctgaaaacaacttatggacatgtcatcagatgtttttataag 165  Q
    ||||||||||||||||||||| ||||||||| || |||||| |||||    
T  29929650 atatgctgaaaacaacttatgcacatgtcatgagttgttttcataag 29929604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 70 - 108
Target Start/End: Complemental strand, 32859906 - 32859868
Alignment:
Q  70 acttatgctagtagataagctcaaataagccaattcaaa 108  Q
    |||||||||||||||||||||||| |||| |||||||||    
T  32859906 acttatgctagtagataagctcaagtaagtcaattcaaa 32859868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 68 - 114
Target Start/End: Complemental strand, 43230733 - 43230687
Alignment:
Q  68 aaacttatgctagtagataagctcaaataagccaattcaaacaggcc 114  Q
    |||||||||| |||||| ||||||||||| |||||| ||||||||||    
T  43230733 aaacttatgccagtagagaagctcaaatatgccaatccaaacaggcc 43230687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 203 - 241
Target Start/End: Original strand, 43420383 - 43420421
Alignment:
Q  203 ataagctcaaataagctaatccaaacagacccttgttct 241  Q
    |||||||||||||||||||||| ||||||||||| ||||    
T  43420383 ataagctcaaataagctaatcctaacagacccttattct 43420421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 120
Target Start/End: Complemental strand, 4076651 - 4076606
Alignment:
Q  75 tgctagtagataagctcaaataagccaattcaaacaggccctatat 120  Q
    |||| |||||||| |||||||||||||||  |||||||||||||||    
T  4076651 tgctggtagataaactcaaataagccaatcaaaacaggccctatat 4076606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 116
Target Start/End: Complemental strand, 10199366 - 10199321
Alignment:
Q  71 cttatgctagtagataagctcaaataagccaattcaaacaggccct 116  Q
    |||||| ||||||||||||||||||||| |||| ||| ||||||||    
T  10199366 cttatgttagtagataagctcaaataagtcaatccaaccaggccct 10199321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 184
Target Start/End: Complemental strand, 27963391 - 27963334
Alignment:
Q  127 aaaacaacttatggacatgtcatcagatgtttttataagttttctccaacactttcac 184  Q
    ||||||||||||||||||||||| || ||||  |||||| |||||| |||| ||||||    
T  27963391 aaaacaacttatggacatgtcataagctgttaatataagctttctcaaacaatttcac 27963334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 116
Target Start/End: Original strand, 29904860 - 29904909
Alignment:
Q  68 aaacttatgctagtagataagctcaaataag-ccaattcaaacaggccct 116  Q
    |||||||||| |||||||||||||||||||| |||||  |||||||||||    
T  29904860 aaacttatgcaagtagataagctcaaataagcccaataaaaacaggccct 29904909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 112
Target Start/End: Complemental strand, 30815612 - 30815571
Alignment:
Q  71 cttatgctagtagataagctcaaataagccaattcaaacagg 112  Q
    ||||||||||||||||| ||||||||||||| | ||||||||    
T  30815612 cttatgctagtagataacctcaaataagccattccaaacagg 30815571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 172
Target Start/End: Original strand, 31118088 - 31118137
Alignment:
Q  123 gctgaaaacaacttatggacatgtcatcagatgtttttataagttttctc 172  Q
    ||||||||||||| ||| ||||||||| ||||||||| ||||||| ||||    
T  31118088 gctgaaaacaactgatgaacatgtcataagatgttttcataagttgtctc 31118137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 236
Target Start/End: Original strand, 34952327 - 34952360
Alignment:
Q  203 ataagctcaaataagctaatccaaacagaccctt 236  Q
    |||||||||||||||| |||||||||||||||||    
T  34952327 ataagctcaaataagccaatccaaacagaccctt 34952360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 109
Target Start/End: Complemental strand, 42575426 - 42575389
Alignment:
Q  72 ttatgctagtagataagctcaaataagccaattcaaac 109  Q
    ||||||||||||||||||||||||||| |||| |||||    
T  42575426 ttatgctagtagataagctcaaataaggcaatccaaac 42575389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 69 - 113
Target Start/End: Original strand, 473273 - 473317
Alignment:
Q  69 aacttatgctagtagataagctcaaataagccaattcaaacaggc 113  Q
    ||||||||| |||||||| ||||||||||||||||  ||||||||    
T  473273 aacttatgccagtagataggctcaaataagccaatctaaacaggc 473317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 71 - 99
Target Start/End: Original strand, 2832084 - 2832112
Alignment:
Q  71 cttatgctagtagataagctcaaataagc 99  Q
    |||||||||||||||||||||||||||||    
T  2832084 cttatgctagtagataagctcaaataagc 2832112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 81 - 117
Target Start/End: Original strand, 5047268 - 5047304
Alignment:
Q  81 tagataagctcaaataagccaattcaaacaggcccta 117  Q
    |||||||||||||||||||||||||| |||| |||||    
T  5047268 tagataagctcaaataagccaattcagacagtcccta 5047304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 68 - 108
Target Start/End: Original strand, 5721034 - 5721074
Alignment:
Q  68 aaacttatgctagtagataagctcaaataagccaattcaaa 108  Q
    |||||||||| ||||| ||||||||||||||||||| ||||    
T  5721034 aaacttatgcaagtagttaagctcaaataagccaatccaaa 5721074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 68 - 108
Target Start/End: Original strand, 5741715 - 5741755
Alignment:
Q  68 aaacttatgctagtagataagctcaaataagccaattcaaa 108  Q
    |||||||||| ||||| ||||||||||||||||||| ||||    
T  5741715 aaacttatgcaagtagttaagctcaaataagccaatccaaa 5741755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 77 - 113
Target Start/End: Complemental strand, 15942699 - 15942663
Alignment:
Q  77 ctagtagataagctcaaataagccaattcaaacaggc 113  Q
    |||||||||| |||||||||||||||| |||||||||    
T  15942699 ctagtagataggctcaaataagccaatccaaacaggc 15942663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 80 - 112
Target Start/End: Original strand, 37591551 - 37591583
Alignment:
Q  80 gtagataagctcaaataagccaattcaaacagg 112  Q
    |||||||||||||||| ||||||||||||||||    
T  37591551 gtagataagctcaaatgagccaattcaaacagg 37591583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 126 - 194
Target Start/End: Original strand, 42336663 - 42336731
Alignment:
Q  126 gaaaacaacttatggacatgtcatcagatgtttttataagttttctccaacactttcacaagtacttat 194  Q
    ||||||||||| |||||||||||| || |||||| ||||||| |||| |||| |  ||||||| |||||    
T  42336663 gaaaacaacttttggacatgtcataagttgttttcataagttatctcaaacagtcgcacaagtgcttat 42336731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 123 - 195
Target Start/End: Complemental strand, 49692077 - 49692005
Alignment:
Q  123 gctgaaaacaacttatggacatgtcatcagatgtttttataagttttctccaacactttcacaagtacttatg 195  Q
    |||||||||||  |||||||||||||| || | |||| ||||||| |||| |||| | |||||||| ||||||    
T  49692077 gctgaaaacaaactatggacatgtcataagctattttcataagttctctcaaacagtctcacaagttcttatg 49692005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 71 - 111
Target Start/End: Complemental strand, 51957354 - 51957314
Alignment:
Q  71 cttatgctagtagataagctcaaataagccaattcaaacag 111  Q
    |||||||||||||||||| |||||||||| ||| |||||||    
T  51957354 cttatgctagtagataagttcaaataagctaatacaaacag 51957314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 125 - 230
Target Start/End: Complemental strand, 2460174 - 2460069
Alignment:
Q  125 tgaaaacaacttatggacatgtcatcagatgtttttataagttttctccaacactttcacaagtacttatgttaaaatataagctcaaataagctaatcc 224  Q
    |||||||||||||  |||||||||| || |||||  ||||| | |||| |||| | ||||||||||||||| ||   |||||||||||||||| ||||||    
T  2460174 tgaaaacaacttaaagacatgtcataagttgtttccataagctctctcaaacagtctcacaagtacttatgctagtttataagctcaaataagttaatcc 2460075  T
Q  225 aaacag 230  Q
    ||||||    
T  2460074 aaacag 2460069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 47 - 111
Target Start/End: Complemental strand, 835243 - 835179
Alignment:
Q  47 ttgttttcaaaacttctcttgaaacttatgctagtagataagctcaaataagccaattcaaacag 111  Q
    |||||||||||| ||| |   ||||||||||||||||||||||||||||||| |||| |||||||    
T  835243 ttgttttcaaaagttcccacaaaacttatgctagtagataagctcaaataaggcaatccaaacag 835179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 68 - 116
Target Start/End: Complemental strand, 35069573 - 35069525
Alignment:
Q  68 aaacttatgctagtagataagctcaaataagccaattcaaacaggccct 116  Q
    |||||||||  ||||||||||||||||||||||||| ||||||||||||    
T  35069573 aaacttatgtcagtagataagctcaaataagccaatacaaacaggccct 35069525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 68 - 110
Target Start/End: Original strand, 4163262 - 4163304
Alignment:
Q  68 aaacttatgctagtagataagctcaaataagccaattcaaaca 110  Q
    |||||||||| ||||||||||||||||||||||||| ||||||    
T  4163262 aaacttatgccagtagataagctcaaataagccaatccaaaca 4163304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 68 - 110
Target Start/End: Original strand, 4224883 - 4224925
Alignment:
Q  68 aaacttatgctagtagataagctcaaataagccaattcaaaca 110  Q
    |||||||||| ||||||||||||||||||||||||| ||||||    
T  4224883 aaacttatgccagtagataagctcaaataagccaatccaaaca 4224925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 68 - 117
Target Start/End: Original strand, 848098 - 848146
Alignment:
Q  68 aaacttatgctagtagataagctcaaataagccaattcaaacaggcccta 117  Q
    |||||||||||| |||||||||||||||||| |||| |||||||||||||    
T  848098 aaacttatgcta-tagataagctcaaataaggcaatccaaacaggcccta 848146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 115
Target Start/End: Original strand, 12111079 - 12111123
Alignment:
Q  71 cttatgctagtagataagctcaaataagccaattcaaacaggccc 115  Q
    |||||||||||||||||||||||||||| |||| |||| ||||||    
T  12111079 cttatgctagtagataagctcaaataagtcaatccaaataggccc 12111123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 114
Target Start/End: Complemental strand, 32205972 - 32205928
Alignment:
Q  70 acttatgctagtagataagctcaaataagccaattcaaacaggcc 114  Q
    ||||||||||||||||||| ||||||||| |||| ||||||||||    
T  32205972 acttatgctagtagataaggtcaaataagtcaatccaaacaggcc 32205928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 78 - 117
Target Start/End: Original strand, 507316 - 507355
Alignment:
Q  78 tagtagataagctcaaataagccaattcaaacaggcccta 117  Q
    ||||||||||||||||| |||||||| |||||||||||||    
T  507316 tagtagataagctcaaacaagccaatccaaacaggcccta 507355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 81 - 116
Target Start/End: Original strand, 30641867 - 30641902
Alignment:
Q  81 tagataagctcaaataagccaattcaaacaggccct 116  Q
    ||||||| ||||||||||||||||||||||||||||    
T  30641867 tagataaactcaaataagccaattcaaacaggccct 30641902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 79 - 117
Target Start/End: Original strand, 24670523 - 24670561
Alignment:
Q  79 agtagataagctcaaataagccaattcaaacaggcccta 117  Q
    |||||||||| |||||||| |||||||||||||||||||    
T  24670523 agtagataagttcaaataaaccaattcaaacaggcccta 24670561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 113
Target Start/End: Original strand, 103539 - 103584
Alignment:
Q  68 aaacttatgctagtagataagctcaaataagccaattcaaacaggc 113  Q
    |||||||||||| || ||||||||||||||| |||| |||||||||    
T  103539 aaacttatgctaatatataagctcaaataagtcaatccaaacaggc 103584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 108
Target Start/End: Original strand, 324078 - 324115
Alignment:
Q  71 cttatgctagtagataagctcaaataagccaattcaaa 108  Q
    ||||||||||| |||||| |||||||||||||||||||    
T  324078 cttatgctagttgataagttcaaataagccaattcaaa 324115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 121
Target Start/End: Original strand, 2457062 - 2457103
Alignment:
Q  80 gtagataagctcaaataagccaattcaaacaggccctatata 121  Q
    |||||||| ||||||||||||||| |||||||||| ||||||    
T  2457062 gtagataatctcaaataagccaatccaaacaggccatatata 2457103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 116
Target Start/End: Complemental strand, 25103256 - 25103211
Alignment:
Q  71 cttatgctagtagataagctcaaataagccaattcaaacaggccct 116  Q
    ||||||| | ||||||||||||||| ||||||||||||||| ||||    
T  25103256 cttatgccaatagataagctcaaattagccaattcaaacagaccct 25103211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 121
Target Start/End: Original strand, 31623659 - 31623712
Alignment:
Q  68 aaacttatgctagtagataagctcaaataagccaattcaaacaggccctatata 121  Q
    ||||||| || |||||||||  ||||||||| |||||||||||| |||||||||    
T  31623659 aaacttaggccagtagataaattcaaataagtcaattcaaacagaccctatata 31623712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 115
Target Start/End: Complemental strand, 35070613 - 35070568
Alignment:
Q  70 acttatgctagtagataagctcaaataagccaattcaaacaggccc 115  Q
    |||| ||| ||||| ||||||||||||||||||| |||||||||||    
T  35070613 acttgtgccagtaggtaagctcaaataagccaatccaaacaggccc 35070568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 71 - 103
Target Start/End: Original strand, 31338089 - 31338121
Alignment:
Q  71 cttatgctagtagataagctcaaataagccaat 103  Q
    |||||||||||||||||||||||||||| ||||    
T  31338089 cttatgctagtagataagctcaaataagtcaat 31338121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 201 - 233
Target Start/End: Original strand, 31624383 - 31624415
Alignment:
Q  201 atataagctcaaataagctaatccaaacagacc 233  Q
    |||||||||||||||||| ||||||||||||||    
T  31624383 atataagctcaaataagccaatccaaacagacc 31624415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 119 - 167
Target Start/End: Complemental strand, 34404754 - 34404706
Alignment:
Q  119 atatgctgaaaacaacttatggacatgtcatcagatgtttttataagtt 167  Q
    |||||||||||||| |||||| ||||||||| |||| |||| |||||||    
T  34404754 atatgctgaaaacagcttatgtacatgtcataagatattttcataagtt 34404706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 72 - 104
Target Start/End: Complemental strand, 34429671 - 34429639
Alignment:
Q  72 ttatgctagtagataagctcaaataagccaatt 104  Q
    |||||||||||||||||||||||||| ||||||    
T  34429671 ttatgctagtagataagctcaaataaaccaatt 34429639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 68 - 112
Target Start/End: Complemental strand, 16937844 - 16937800
Alignment:
Q  68 aaacttatgctagtagataagctcaaataagccaattcaaacagg 112  Q
    |||||||||||||||||||||||||||||||||||| ||||||||    
T  16937844 aaacttatgctagtagataagctcaaataagccaatccaaacagg 16937800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 68 - 116
Target Start/End: Complemental strand, 7705959 - 7705911
Alignment:
Q  68 aaacttatgctagtagataagctcaaataagccaattcaaacaggccct 116  Q
    ||||||||||||||||||| ||||||||||| |||| ||||||||||||    
T  7705959 aaacttatgctagtagatatgctcaaataagtcaatccaaacaggccct 7705911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 68 - 117
Target Start/End: Complemental strand, 25461609 - 25461560
Alignment:
Q  68 aaacttatgctagtagataagctcaaataagccaattcaaacaggcccta 117  Q
    |||||||||||  ||||||||||||||||||||||| ||||| |||||||    
T  25461609 aaacttatgctgatagataagctcaaataagccaatccaaacgggcccta 25461560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 116
Target Start/End: Complemental strand, 11153403 - 11153359
Alignment:
Q  72 ttatgctagtagataagctcaaataagccaattcaaacaggccct 116  Q
    ||||||||||||||||||||||| |||||||| ||||||| ||||    
T  11153403 ttatgctagtagataagctcaaacaagccaatccaaacagcccct 11153359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 79 - 115
Target Start/End: Complemental strand, 41535054 - 41535018
Alignment:
Q  79 agtagataagctcaaataagccaattcaaacaggccc 115  Q
    ||||||| |||||||||||||||||||||||||||||    
T  41535054 agtagatgagctcaaataagccaattcaaacaggccc 41535018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 71 - 114
Target Start/End: Complemental strand, 6938691 - 6938648
Alignment:
Q  71 cttatgctagtagataagctcaaataagccaattcaaacaggcc 114  Q
    ||||||||||||||||||||||||||| | ||| ||||||||||    
T  6938691 cttatgctagtagataagctcaaataacctaatccaaacaggcc 6938648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 71 - 110
Target Start/End: Complemental strand, 36542244 - 36542205
Alignment:
Q  71 cttatgctagtagataagctcaaataagccaattcaaaca 110  Q
    |||||| ||||||||||||||||| |||||||||||||||    
T  36542244 cttatgttagtagataagctcaaacaagccaattcaaaca 36542205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 69 - 111
Target Start/End: Complemental strand, 1464980 - 1464938
Alignment:
Q  69 aacttatgctagtagataagctcaaataagccaattcaaacag 111  Q
    |||||||||||| || |||||||||||||| ||||||||||||    
T  1464980 aacttatgctagaagctaagctcaaataagtcaattcaaacag 1464938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 111
Target Start/End: Complemental strand, 6738424 - 6738391
Alignment:
Q  78 tagtagataagctcaaataagccaattcaaacag 111  Q
    |||||||||||||||||||||||| |||||||||    
T  6738424 tagtagataagctcaaataagccagttcaaacag 6738391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 108
Target Start/End: Complemental strand, 10771846 - 10771809
Alignment:
Q  71 cttatgctagtagataagctcaaataagccaattcaaa 108  Q
    ||||||| ||||||||||||||||||||||||| ||||    
T  10771846 cttatgccagtagataagctcaaataagccaatccaaa 10771809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 111
Target Start/End: Complemental strand, 17756345 - 17756304
Alignment:
Q  70 acttatgctagtagataagctcaaataagccaattcaaacag 111  Q
    ||||||||||||||||||||| ||||||| ||||| ||||||    
T  17756345 acttatgctagtagataagctaaaataagtcaatttaaacag 17756304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 112
Target Start/End: Complemental strand, 25720375 - 25720334
Alignment:
Q  71 cttatgctagtagataagctcaaataagccaattcaaacagg 112  Q
    ||||||| ||||||||| ||||||||||| ||||||||||||    
T  25720375 cttatgccagtagataacctcaaataagctaattcaaacagg 25720334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 112
Target Start/End: Complemental strand, 26004955 - 26004914
Alignment:
Q  71 cttatgctagtagataagctcaaataagccaattcaaacagg 112  Q
    |||||||||||||||||||| ||||||| |||| ||||||||    
T  26004955 cttatgctagtagataagctaaaataagtcaatccaaacagg 26004914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 116
Target Start/End: Original strand, 41820151 - 41820184
Alignment:
Q  83 gataagctcaaataagccaattcaaacaggccct 116  Q
    |||||||||||||||||||||||||||| |||||    
T  41820151 gataagctcaaataagccaattcaaacaagccct 41820184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 69 - 105
Target Start/End: Original strand, 3520687 - 3520723
Alignment:
Q  69 aacttatgctagtagataagctcaaataagccaattc 105  Q
    ||||||| ||||||||| |||||||||||||||||||    
T  3520687 aacttatactagtagatgagctcaaataagccaattc 3520723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 72 - 116
Target Start/End: Complemental strand, 8651309 - 8651265
Alignment:
Q  72 ttatgctagtagataagctcaaataagccaattcaaacaggccct 116  Q
    ||||||||| ||||||||||||||||| |||| |||||| |||||    
T  8651309 ttatgctagaagataagctcaaataaggcaatccaaacatgccct 8651265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 72 - 116
Target Start/End: Original strand, 9174929 - 9174973
Alignment:
Q  72 ttatgctagtagataagctcaaataagccaattcaaacaggccct 116  Q
    |||||||| |||||||||||||||||| |||| |||||| |||||    
T  9174929 ttatgctaatagataagctcaaataagtcaatccaaacatgccct 9174973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 72 - 108
Target Start/End: Complemental strand, 11615611 - 11615575
Alignment:
Q  72 ttatgctagtagataagctcaaataagccaattcaaa 108  Q
    ||||| |||||||||||||||||||||||||| ||||    
T  11615611 ttatgttagtagataagctcaaataagccaatccaaa 11615575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 68 - 116
Target Start/End: Complemental strand, 12433134 - 12433086
Alignment:
Q  68 aaacttatgctagtagataagctcaaataagccaattcaaacaggccct 116  Q
    |||| ||||| |||| ||||| |||||||||||||| ||||||||||||    
T  12433134 aaacctatgccagtaaataagttcaaataagccaatccaaacaggccct 12433086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 68 - 116
Target Start/End: Complemental strand, 40438915 - 40438867
Alignment:
Q  68 aaacttatgctagtagataagctcaaataagccaattcaaacaggccct 116  Q
    |||||||||| ||||||| ||| ||||||||||||| |||| |||||||    
T  40438915 aaacttatgccagtagatgagcccaaataagccaatccaaagaggccct 40438867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 79 - 111
Target Start/End: Original strand, 42647010 - 42647042
Alignment:
Q  79 agtagataagctcaaataagccaattcaaacag 111  Q
    ||||||||||||||||||||||||| |||||||    
T  42647010 agtagataagctcaaataagccaatccaaacag 42647042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 68 - 116
Target Start/End: Original strand, 43300987 - 43301035
Alignment:
Q  68 aaacttatgctagtagataagctcaaataagccaattcaaacaggccct 116  Q
    |||||||||| | || |||||||||||||||||||| |||||| |||||    
T  43300987 aaacttatgccattatataagctcaaataagccaatccaaacatgccct 43301035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 41)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 71 - 113
Target Start/End: Original strand, 33503110 - 33503152
Alignment:
Q  71 cttatgctagtagataagctcaaataagccaattcaaacaggc 113  Q
    ||||||||||||||||||||||||||||||||| |||||||||    
T  33503110 cttatgctagtagataagctcaaataagccaatacaaacaggc 33503152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 70 - 116
Target Start/End: Original strand, 2790349 - 2790395
Alignment:
Q  70 acttatgctagtagataagctcaaataagccaattcaaacaggccct 116  Q
    |||||| |||||||||||| |||||||||||||| ||||||||||||    
T  2790349 acttatactagtagataagttcaaataagccaatccaaacaggccct 2790395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 125 - 191
Target Start/End: Complemental strand, 34652059 - 34651993
Alignment:
Q  125 tgaaaacaacttatggacatgtcatcagatgtttttataagttttctccaacactttcacaagtact 191  Q
    |||||||| |||||||||||||||| || ||||| |||||| ||||||||||  | |||||||||||    
T  34652059 tgaaaacagcttatggacatgtcataagttgtttctataagctttctccaaccgtctcacaagtact 34651993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 68 - 117
Target Start/End: Original strand, 15305783 - 15305832
Alignment:
Q  68 aaacttatgctagtagataagctcaaataagccaattcaaacaggcccta 117  Q
    |||||||||  | ||||||||||||||||||||||| |||||||||||||    
T  15305783 aaacttatgtcaatagataagctcaaataagccaatccaaacaggcccta 15305832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 67 - 120
Target Start/End: Complemental strand, 42868443 - 42868390
Alignment:
Q  67 gaaacttatgctagtagataagctcaaataagccaattcaaacaggccctatat 120  Q
    ||||| ||||| | |||||||||||||||||| |||| ||||||||||||||||    
T  42868443 gaaacgtatgccaatagataagctcaaataaggcaatccaaacaggccctatat 42868390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 123 - 232
Target Start/End: Complemental strand, 44606135 - 44606026
Alignment:
Q  123 gctgaaaacaacttatggacatgtcatcagatgtttttataagttttctccaacactttcacaagtacttatgttaaaatataagctcaaataagctaat 222  Q
    ||||||||||||||||||||||||||| || |||||| ||||||| |  | |||| |   |||||||||||||| || ||| |  ||||||||||  ||     
T  44606135 gctgaaaacaacttatggacatgtcataagttgttttcataagttcttccaaacagtcgtacaagtacttatgtcaatataaacactcaaataagtcaac 44606036  T
Q  223 ccaaacagac 232  Q
    ||||||||||    
T  44606035 ccaaacagac 44606026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 195
Target Start/End: Original strand, 787377 - 787449
Alignment:
Q  123 gctgaaaacaacttatggacatgtcatcagatgtttttataagttttctccaacactttcacaagtacttatg 195  Q
    |||||||||| |||||||||||||||| || |||||| ||||||| || | |||| | |||||||| ||||||    
T  787377 gctgaaaacagcttatggacatgtcataagctgttttcataagttctcacaaacagtgtcacaagtgcttatg 787449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 116
Target Start/End: Original strand, 4607046 - 4607082
Alignment:
Q  80 gtagataagctcaaataagccaattcaaacaggccct 116  Q
    |||||||||||||||||||||||| ||||||||||||    
T  4607046 gtagataagctcaaataagccaatccaaacaggccct 4607082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 83 - 115
Target Start/End: Original strand, 25790248 - 25790280
Alignment:
Q  83 gataagctcaaataagccaattcaaacaggccc 115  Q
    |||||||||||||||||||||||||||||||||    
T  25790248 gataagctcaaataagccaattcaaacaggccc 25790280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 111
Target Start/End: Complemental strand, 30990397 - 30990357
Alignment:
Q  71 cttatgctagtagataagctcaaataagccaattcaaacag 111  Q
    |||||| |||||||||||||||||||||||||| |||||||    
T  30990397 cttatgttagtagataagctcaaataagccaatccaaacag 30990357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 117
Target Start/End: Original strand, 31179196 - 31179228
Alignment:
Q  85 taagctcaaataagccaattcaaacaggcccta 117  Q
    |||||||||||||||||||||||||||||||||    
T  31179196 taagctcaaataagccaattcaaacaggcccta 31179228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 117
Target Start/End: Original strand, 31190461 - 31190493
Alignment:
Q  85 taagctcaaataagccaattcaaacaggcccta 117  Q
    |||||||||||||||||||||||||||||||||    
T  31190461 taagctcaaataagccaattcaaacaggcccta 31190493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 68 - 115
Target Start/End: Original strand, 449956 - 450003
Alignment:
Q  68 aaacttatgctagtagataagctcaaataagccaattcaaacaggccc 115  Q
    |||||||||||||||||||||||||||||||  ||| |||||| ||||    
T  449956 aaacttatgctagtagataagctcaaataagttaatgcaaacatgccc 450003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 81 - 116
Target Start/End: Complemental strand, 7928246 - 7928211
Alignment:
Q  81 tagataagctcaaataagccaattcaaacaggccct 116  Q
    ||||||||||||||||||||||| ||||||||||||    
T  7928246 tagataagctcaaataagccaatccaaacaggccct 7928211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 71 - 114
Target Start/End: Complemental strand, 15370281 - 15370238
Alignment:
Q  71 cttatgctagtagataagctcaaataagccaattcaaacaggcc 114  Q
    ||||||| |||||||||||||||||||| |||| ||||||||||    
T  15370281 cttatgccagtagataagctcaaataagtcaatccaaacaggcc 15370238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 68 - 111
Target Start/End: Original strand, 18179058 - 18179101
Alignment:
Q  68 aaacttatgctagtagataagctcaaataagccaattcaaacag 111  Q
    ||||||||| ||||||||||||||||||||| |||| |||||||    
T  18179058 aaacttatgttagtagataagctcaaataagtcaatccaaacag 18179101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 68 - 123
Target Start/End: Original strand, 20933835 - 20933890
Alignment:
Q  68 aaacttatgctagtagataagctcaaataagccaattcaaacaggccctatatatg 123  Q
    |||||| ||||| ||||||||||||||||||  ||| |||||| ||||||||||||    
T  20933835 aaacttctgctaatagataagctcaaataagaaaatccaaacatgccctatatatg 20933890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 86 - 117
Target Start/End: Original strand, 31198470 - 31198501
Alignment:
Q  86 aagctcaaataagccaattcaaacaggcccta 117  Q
    ||||||||||||||||||||||||||||||||    
T  31198470 aagctcaaataagccaattcaaacaggcccta 31198501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 86 - 117
Target Start/End: Original strand, 31217082 - 31217113
Alignment:
Q  86 aagctcaaataagccaattcaaacaggcccta 117  Q
    ||||||||||||||||||||||||||||||||    
T  31217082 aagctcaaataagccaattcaaacaggcccta 31217113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 71 - 110
Target Start/End: Original strand, 43259947 - 43259986
Alignment:
Q  71 cttatgctagtagataagctcaaataagccaattcaaaca 110  Q
    |||||||||||||||||| |||||||||||||| ||||||    
T  43259947 cttatgctagtagataagttcaaataagccaatccaaaca 43259986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 70 - 116
Target Start/End: Original strand, 9996849 - 9996895
Alignment:
Q  70 acttatgctagtagataagctcaaataagccaattcaaacaggccct 116  Q
    |||||||||||| |||||||||||||||| |||  ||||||||||||    
T  9996849 acttatgctagttgataagctcaaataagtcaagccaaacaggccct 9996895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 71 - 117
Target Start/End: Original strand, 29936140 - 29936186
Alignment:
Q  71 cttatgctagtagataagctcaaataagccaattcaaacaggcccta 117  Q
    ||||||| || |||| ||||||||||||||||| |||||||||||||    
T  29936140 cttatgccagaagatgagctcaaataagccaatccaaacaggcccta 29936186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 123 - 165
Target Start/End: Complemental strand, 30538198 - 30538156
Alignment:
Q  123 gctgaaaacaacttatggacatgtcatcagatgtttttataag 165  Q
    ||||||||||||||||||||||||||| || ||||| ||||||    
T  30538198 gctgaaaacaacttatggacatgtcataagttgtttctataag 30538156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 71 - 117
Target Start/End: Complemental strand, 35378490 - 35378444
Alignment:
Q  71 cttatgctagtagataagctcaaataagccaattcaaacaggcccta 117  Q
    ||||||||| || |||||||||||||||||||| |||||| ||||||    
T  35378490 cttatgctattatataagctcaaataagccaatccaaacatgcccta 35378444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 116
Target Start/End: Original strand, 3312197 - 3312234
Alignment:
Q  79 agtagataagctcaaataagccaattcaaacaggccct 116  Q
    ||||||||||||||||||||||||| |||||| |||||    
T  3312197 agtagataagctcaaataagccaatccaaacaagccct 3312234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 116
Target Start/End: Complemental strand, 10563518 - 10563473
Alignment:
Q  71 cttatgctagtagataagctcaaataagccaattcaaacaggccct 116  Q
    |||||||| ||||||||| ||||||||| |||| ||||||||||||    
T  10563518 cttatgctggtagataagttcaaataagtcaatccaaacaggccct 10563473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 117
Target Start/End: Original strand, 11307425 - 11307458
Alignment:
Q  84 ataagctcaaataagccaattcaaacaggcccta 117  Q
    ||||||||||||||| ||||||||||||||||||    
T  11307425 ataagctcaaataagtcaattcaaacaggcccta 11307458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 120
Target Start/End: Original strand, 31096422 - 31096463
Alignment:
Q  79 agtagataagctcaaataagccaattcaaacaggccctatat 120  Q
    |||||||||| ||||||||||||||| ||||||||| |||||    
T  31096422 agtagataagttcaaataagccaatttaaacaggccttatat 31096463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 111
Target Start/End: Original strand, 33942017 - 33942058
Alignment:
Q  70 acttatgctagtagataagctcaaataagccaattcaaacag 111  Q
    |||||||| ||||||||| ||||||||||||||| |||||||    
T  33942017 acttatgccagtagataacctcaaataagccaatccaaacag 33942058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 120
Target Start/End: Complemental strand, 39659471 - 39659418
Alignment:
Q  67 gaaacttatgctagtagataagctcaaataagccaattcaaacaggccctatat 120  Q
    ||||||||||  |||||||||||||||  |||||||| ||||||||| ||||||    
T  39659471 gaaacttatgtcagtagataagctcaagcaagccaatccaaacaggctctatat 39659418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 117
Target Start/End: Complemental strand, 42659172 - 42659123
Alignment:
Q  68 aaacttatgctagtagataagctcaaataagccaattcaaacaggcccta 117  Q
    |||||||||| |||| |||||||||||||||||||  |||||||| ||||    
T  42659172 aaacttatgccagtaaataagctcaaataagccaacccaaacaggtccta 42659123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 117
Target Start/End: Complemental strand, 44438790 - 44438753
Alignment:
Q  80 gtagataagctcaaataagccaattcaaacaggcccta 117  Q
    |||||||||||||||| || ||||||||||||||||||    
T  44438790 gtagataagctcaaatcagtcaattcaaacaggcccta 44438753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 181 - 233
Target Start/End: Original strand, 2790636 - 2790688
Alignment:
Q  181 tcacaagtacttatgttaaaatataagctcaaataagctaatccaaacagacc 233  Q
    ||||||||||||||| ||  | ||||| |||||||||| ||||||||||||||    
T  2790636 tcacaagtacttatgctagcagataagttcaaataagcgaatccaaacagacc 2790688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 135 - 235
Target Start/End: Original strand, 4350747 - 4350847
Alignment:
Q  135 ttatggacatgtcatcagatgtttttataagttttctccaacactttcacaagtacttatgttaaaatataagctcaaataagctaatccaaacagaccc 234  Q
    ||||| ||||||||| || |||||| ||||||| |||| |||| | ||  |||| ||||||| |  | | |||||||||||||| |||||||||| ||||    
T  4350747 ttatgaacatgtcataagctgttttcataagttctctcaaacaatctcttaagtgcttatgtcagtagagaagctcaaataagccaatccaaacaaaccc 4350846  T
Q  235 t 235  Q
    |    
T  4350847 t 4350847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 81 - 117
Target Start/End: Original strand, 14319472 - 14319508
Alignment:
Q  81 tagataagctcaaataagccaattcaaacaggcccta 117  Q
    ||||||||||||||||||||| | |||||||||||||    
T  14319472 tagataagctcaaataagccattacaaacaggcccta 14319508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 71 - 111
Target Start/End: Original strand, 15377877 - 15377917
Alignment:
Q  71 cttatgctagtagataagctcaaataagccaattcaaacag 111  Q
    |||||| ||||| ||||||||||||||||||||| ||||||    
T  15377877 cttatgttagtacataagctcaaataagccaattgaaacag 15377917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 125 - 229
Target Start/End: Original strand, 19977994 - 19978098
Alignment:
Q  125 tgaaaacaacttatggacatgtcatcagatgtttttataagttttctccaacactttcacaagtacttatgttaaaatataagctcaaataagctaatcc 224  Q
    ||||||||||||||| || ||| || || ||||| |||||||| |||| |||| | || ||||| ||||| |||| | |||| || |||||||  |||||    
T  19977994 tgaaaacaacttatgaacgtgttataagttgtttctataagttctctcaaacagtctcgcaagtgcttattttaatagataaactaaaataagtgaatcc 19978093  T
Q  225 aaaca 229  Q
    |||||    
T  19978094 aaaca 19978098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 71 - 103
Target Start/End: Original strand, 25609908 - 25609940
Alignment:
Q  71 cttatgctagtagataagctcaaataagccaat 103  Q
    |||||| ||||||||||||||||||||||||||    
T  25609908 cttatgttagtagataagctcaaataagccaat 25609940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 123 - 227
Target Start/End: Original strand, 40158763 - 40158867
Alignment:
Q  123 gctgaaaacaacttatggacatgtcatcagatgtttttataagttttctccaacactttcacaagtacttatgttaaaatataagctcaaataagctaat 222  Q
    ||||||||||||||||  ||||||||| || |||||| |||||||  | | | || | |||||||| ||||||| |  | ||| |||||||||||| |||    
T  40158763 gctgaaaacaacttataaacatgtcataagctgttttcataagttcccccaatcagtctcacaagttcttatgtcagtagatatgctcaaataagccaat 40158862  T
Q  223 ccaaa 227  Q
    |||||    
T  40158863 ccaaa 40158867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 72 - 112
Target Start/End: Original strand, 41170723 - 41170763
Alignment:
Q  72 ttatgctagtagataagctcaaataagccaattcaaacagg 112  Q
    ||||| |||||||||| ||||||||||||||| ||||||||    
T  41170723 ttatgttagtagataaactcaaataagccaatccaaacagg 41170763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 69 - 113
Target Start/End: Original strand, 45229621 - 45229665
Alignment:
Q  69 aacttatgctagtagataagctcaaataagccaattcaaacaggc 113  Q
    ||||||||| ||||||||||||||||| | ||||| |||||||||    
T  45229621 aacttatgccagtagataagctcaaatcaaccaatccaaacaggc 45229665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 123 - 196
Target Start/End: Complemental strand, 10642 - 10569
Alignment:
Q  123 gctgaaaacaacttatggacatgtcatcagatgtttttataagttttctccaacactttcacaagtacttatgt 196  Q
    ||||||||||||||||||||||||||| || |||||  ||||| ||| || |||| | ||||||||||||||||    
T  10642 gctgaaaacaacttatggacatgtcattagttgtttacataagctttgtcaaacagtctcacaagtacttatgt 10569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 67 - 116
Target Start/End: Complemental strand, 30251416 - 30251367
Alignment:
Q  67 gaaacttatgctagtagataagctcaaataagccaattcaaacaggccct 116  Q
    ||||||||||  ||||||||||||||||||||||||| ||||||||||||    
T  30251416 gaaacttatgtcagtagataagctcaaataagccaatccaaacaggccct 30251367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 130 - 230
Target Start/End: Original strand, 16162812 - 16162912
Alignment:
Q  130 acaacttatggacatgtcatcagatgtttttataagttttctccaacactttcacaagtacttatgttaaaatataagctcaaataagctaatccaaaca 229  Q
    |||||||||| ||| ||||| || |||||| |||||||||||| |||| | ||||||||  ||||| ||  | |||| ||||||||||| ||||||||||    
T  16162812 acaacttatgaacaggtcataagctgttttcataagttttctcaaacagtctcacaagtgtttatgctagtagataaactcaaataagccaatccaaaca 16162911  T
Q  230 g 230  Q
    |    
T  16162912 g 16162912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 72 - 115
Target Start/End: Original strand, 16162873 - 16162916
Alignment:
Q  72 ttatgctagtagataagctcaaataagccaattcaaacaggccc 115  Q
    |||||||||||||||| ||||||||||||||| |||||||||||    
T  16162873 ttatgctagtagataaactcaaataagccaatccaaacaggccc 16162916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 71 - 113
Target Start/End: Complemental strand, 43045683 - 43045641
Alignment:
Q  71 cttatgctagtagataagctcaaataagccaattcaaacaggc 113  Q
    |||||||||||||||||||| |||||||||||| |||||||||    
T  43045683 cttatgctagtagataagcttaaataagccaatccaaacaggc 43045641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 116
Target Start/End: Original strand, 9700114 - 9700158
Alignment:
Q  72 ttatgctagtagataagctcaaataagccaattcaaacaggccct 116  Q
    |||||||||||||||||||||||||||  ||| ||||||||||||    
T  9700114 ttatgctagtagataagctcaaataagttaatccaaacaggccct 9700158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 116
Target Start/End: Complemental strand, 29818905 - 29818857
Alignment:
Q  68 aaacttatgctagtagataagctcaaataagccaattcaaacaggccct 116  Q
    ||||||||| ||||||||||||||||||| |||||| |||||| |||||    
T  29818905 aaacttatgatagtagataagctcaaatatgccaatccaaacatgccct 29818857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 229
Target Start/End: Original strand, 33553343 - 33553391
Alignment:
Q  181 tcacaagtacttatgttaaaatataagctcaaataagctaatccaaaca 229  Q
    |||||||| |||||||| | | |||||||||||||||||||||||||||    
T  33553343 tcacaagtgcttatgttgatagataagctcaaataagctaatccaaaca 33553391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 71 - 102
Target Start/End: Original strand, 12976324 - 12976355
Alignment:
Q  71 cttatgctagtagataagctcaaataagccaa 102  Q
    ||||||||||||||||||||||||||||||||    
T  12976324 cttatgctagtagataagctcaaataagccaa 12976355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 68 - 111
Target Start/End: Complemental strand, 36963315 - 36963272
Alignment:
Q  68 aaacttatgctagtagataagctcaaataagccaattcaaacag 111  Q
    |||||||||| ||||||| ||||||||||||||||| |||||||    
T  36963315 aaacttatgccagtagattagctcaaataagccaatccaaacag 36963272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 68 - 115
Target Start/End: Original strand, 38602436 - 38602483
Alignment:
Q  68 aaacttatgctagtagataagctcaaataagccaattcaaacaggccc 115  Q
    |||||||||  |||||||||||||||||||| |||| |||||||||||    
T  38602436 aaacttatgtcagtagataagctcaaataagtcaatccaaacaggccc 38602483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 71 - 113
Target Start/End: Original strand, 7008710 - 7008752
Alignment:
Q  71 cttatgctagtagataagctcaaataagccaattcaaacaggc 113  Q
    ||||||| ||||||||| |||||||||| ||||||||||||||    
T  7008710 cttatgccagtagataaactcaaataagtcaattcaaacaggc 7008752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 68 - 110
Target Start/End: Complemental strand, 9130280 - 9130238
Alignment:
Q  68 aaacttatgctagtagataagctcaaataagccaattcaaaca 110  Q
    |||||||||| ||||||||||||||||||||| ||| ||||||    
T  9130280 aaacttatgccagtagataagctcaaataagctaatccaaaca 9130238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 74 - 116
Target Start/End: Original strand, 31862607 - 31862648
Alignment:
Q  74 atgctagtagataagctcaaataagccaattcaaacaggccct 116  Q
    ||||||||||| ||||||||||||| |||||||||||||||||    
T  31862607 atgctagtaga-aagctcaaataagtcaattcaaacaggccct 31862648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 154 - 216
Target Start/End: Complemental strand, 31884934 - 31884872
Alignment:
Q  154 tgtttttataagttttctccaacactttcacaagtacttatgttaaaatataagctcaaataa 216  Q
    ||||||||||||||||| | |||||| |||||||| |||||| ||  | ||||||||||||||    
T  31884934 tgtttttataagttttcccaaacactctcacaagtgcttatgctagtagataagctcaaataa 31884872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 72 - 118
Target Start/End: Complemental strand, 35643945 - 35643899
Alignment:
Q  72 ttatgctagtagataagctcaaataagccaattcaaacaggccctat 118  Q
    |||||| ||||||||||| ||||||||||||| | ||||||||||||    
T  35643945 ttatgccagtagataagcccaaataagccaatcccaacaggccctat 35643899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 70 - 116
Target Start/End: Complemental strand, 41469949 - 41469903
Alignment:
Q  70 acttatgctagtagataagctcaaataagccaattcaaacaggccct 116  Q
    |||||||||||||||||||||  ||| |||||||||||| |||||||    
T  41469949 acttatgctagtagataagctttaattagccaattcaaataggccct 41469903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 109
Target Start/End: Complemental strand, 1058038 - 1057997
Alignment:
Q  68 aaacttatgctagtagataagctcaaataagccaattcaaac 109  Q
    |||||||||  ||||||||||||||||||||||| |||||||    
T  1058038 aaacttatgtaagtagataagctcaaataagccagttcaaac 1057997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 111
Target Start/End: Complemental strand, 10062092 - 10062059
Alignment:
Q  78 tagtagataagctcaaataagccaattcaaacag 111  Q
    |||||||||||||||||||||||||| |||||||    
T  10062092 tagtagataagctcaaataagccaatccaaacag 10062059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 108
Target Start/End: Original strand, 11376823 - 11376852
Alignment:
Q  79 agtagataagctcaaataagccaattcaaa 108  Q
    ||||||||||||||||||||||||||||||    
T  11376823 agtagataagctcaaataagccaattcaaa 11376852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 117
Target Start/End: Original strand, 15180648 - 15180697
Alignment:
Q  68 aaacttatgctagtagataagctcaaataagccaattcaaacaggcccta 117  Q
    |||||||||  ||||||||| ||||||||||||||| |||||||| ||||    
T  15180648 aaacttatggcagtagataaactcaaataagccaatccaaacaggtccta 15180697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 119
Target Start/End: Complemental strand, 29589925 - 29589876
Alignment:
Q  70 acttatgctagtagataagctcaaataagccaattcaaacaggccctata 119  Q
    ||||||||||||||||||  ||||| |||||||| |||||||| ||||||    
T  29589925 acttatgctagtagataaattcaaaaaagccaatccaaacaggtcctata 29589876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 109
Target Start/End: Complemental strand, 40859744 - 40859703
Alignment:
Q  68 aaacttatgctagtagataagctcaaataagccaattcaaac 109  Q
    ||||||||| ||| |||||||||||||||||||||| |||||    
T  40859744 aaacttatgttagcagataagctcaaataagccaatccaaac 40859703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 117
Target Start/End: Complemental strand, 43717895 - 43717846
Alignment:
Q  68 aaacttatgctagtagataagctcaaataagccaattcaaacaggcccta 117  Q
    |||||||||  | ||||||||||||||||||||||| |||| ||||||||    
T  43717895 aaacttatgtcaatagataagctcaaataagccaatccaaataggcccta 43717846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 68 - 116
Target Start/End: Complemental strand, 10758218 - 10758170
Alignment:
Q  68 aaacttatgctagtagataagctcaaataagccaattcaaacaggccct 116  Q
    ||||||||| ||| ||||||| ||||||||| ||||||||||| |||||    
T  10758218 aaacttatgttagcagataagttcaaataagtcaattcaaacatgccct 10758170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 71 - 115
Target Start/End: Original strand, 20672862 - 20672906
Alignment:
Q  71 cttatgctagtagataagctcaaataagccaattcaaacaggccc 115  Q
    ||||||||||| | ||| ||||||||||||||||||| |||||||    
T  20672862 cttatgctagttggtaaactcaaataagccaattcaagcaggccc 20672906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 71 - 115
Target Start/End: Complemental strand, 31884898 - 31884854
Alignment:
Q  71 cttatgctagtagataagctcaaataagccaattcaaacaggccc 115  Q
    |||||||||||||||||||||||||||  |||| ||| |||||||    
T  31884898 cttatgctagtagataagctcaaataacgcaatccaagcaggccc 31884854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 32)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 68 - 117
Target Start/End: Original strand, 39980838 - 39980887
Alignment:
Q  68 aaacttatgctagtagataagctcaaataagccaattcaaacaggcccta 117  Q
    ||||||||||||||||||||||||||| |||||||| ||||||| |||||    
T  39980838 aaacttatgctagtagataagctcaaacaagccaatccaaacagacccta 39980887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 130 - 230
Target Start/End: Complemental strand, 44014816 - 44014716
Alignment:
Q  130 acaacttatggacatgtcatcagatgtttttataagttttctccaacactttcacaagtacttatgttaaaatataagctcaaataagctaatccaaaca 229  Q
    |||||||||| ||| ||||| || |||||| |||||||||||| |||| | ||||||||  ||||| ||  | |||| ||||||||||| ||||||||||    
T  44014816 acaacttatgaacaggtcataagctgttttcataagttttctcaaacagtctcacaagtgtttatgctagtagataaactcaaataagccaatccaaaca 44014717  T
Q  230 g 230  Q
    |    
T  44014716 g 44014716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 67 - 110
Target Start/End: Original strand, 20880584 - 20880627
Alignment:
Q  67 gaaacttatgctagtagataagctcaaataagccaattcaaaca 110  Q
    ||||||||||| ||||||||||||||||||||||||| ||||||    
T  20880584 gaaacttatgcaagtagataagctcaaataagccaatccaaaca 20880627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 123 - 198
Target Start/End: Original strand, 31010447 - 31010522
Alignment:
Q  123 gctgaaaacaacttatggacatgtcatcagatgtttttataagttttctccaacactttcacaagtacttatgtta 198  Q
    |||||||||| |||||||||||||||| || ||||| |||||| |||| | |||||  |||||||| |||||||||    
T  31010447 gctgaaaacagcttatggacatgtcataagttgtttctataagctttcacaaacacactcacaagttcttatgtta 31010522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 72 - 115
Target Start/End: Complemental strand, 44014755 - 44014712
Alignment:
Q  72 ttatgctagtagataagctcaaataagccaattcaaacaggccc 115  Q
    |||||||||||||||| ||||||||||||||| |||||||||||    
T  44014755 ttatgctagtagataaactcaaataagccaatccaaacaggccc 44014712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 71 - 117
Target Start/End: Original strand, 41057267 - 41057313
Alignment:
Q  71 cttatgctagtagataagctcaaataagccaattcaaacaggcccta 117  Q
    |||||||  ||||||||||||||||||||||||||||| ||||||||    
T  41057267 cttatgcatgtagataagctcaaataagccaattcaaataggcccta 41057313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 169 - 231
Target Start/End: Complemental strand, 49605830 - 49605768
Alignment:
Q  169 tctccaacactttcacaagtacttatgttaaaatataagctcaaataagctaatccaaacaga 231  Q
    |||| |||||| ||||||||||||||| || || |||| ||||||||| ||||||||||||||    
T  49605830 tctcaaacactctcacaagtacttatgctagaagataaactcaaataaactaatccaaacaga 49605768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 123 - 196
Target Start/End: Original strand, 41724257 - 41724330
Alignment:
Q  123 gctgaaaacaacttatggacatgtcatcagatgtttttataagttttctccaacactttcacaagtacttatgt 196  Q
    ||||||||||||||||||||||||||| || |||||  |||||||||| | |||  | | ||||||||||||||    
T  41724257 gctgaaaacaacttatggacatgtcataagttgtttccataagttttcacaaactgtctgacaagtacttatgt 41724330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 72 - 117
Target Start/End: Complemental strand, 53762351 - 53762306
Alignment:
Q  72 ttatgctagtagataagctcaaataagccaattcaaacaggcccta 117  Q
    |||||||||||||||||||||||||| ||||| ||| |||||||||    
T  53762351 ttatgctagtagataagctcaaataaaccaatccaagcaggcccta 53762306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 109
Target Start/End: Original strand, 584156 - 584196
Alignment:
Q  69 aacttatgctagtagataagctcaaataagccaattcaaac 109  Q
    |||||||||||||||||||||||||||||| |||| |||||    
T  584156 aacttatgctagtagataagctcaaataagtcaatccaaac 584196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 111
Target Start/End: Original strand, 11253613 - 11253653
Alignment:
Q  71 cttatgctagtagataagctcaaataagccaattcaaacag 111  Q
    ||||||||||||||||| |||||||||| ||||||||||||    
T  11253613 cttatgctagtagataatctcaaataagtcaattcaaacag 11253653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 112
Target Start/End: Original strand, 38902174 - 38902218
Alignment:
Q  68 aaacttatgctagtagataagctcaaataagccaattcaaacagg 112  Q
    |||||||||| ||||||||||||||||| || |||||||||||||    
T  38902174 aaacttatgccagtagataagctcaaatgaggcaattcaaacagg 38902218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 81 - 116
Target Start/End: Complemental strand, 15304316 - 15304281
Alignment:
Q  81 tagataagctcaaataagccaattcaaacaggccct 116  Q
    |||||||||||||||||| |||||||||||||||||    
T  15304316 tagataagctcaaataagtcaattcaaacaggccct 15304281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 72 - 115
Target Start/End: Original strand, 51929854 - 51929897
Alignment:
Q  72 ttatgctagtagataagctcaaataagccaattcaaacaggccc 115  Q
    |||||||| |||||||||||||||||| |||| |||||||||||    
T  51929854 ttatgctaatagataagctcaaataagtcaatccaaacaggccc 51929897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 82 - 116
Target Start/End: Complemental strand, 1820079 - 1820045
Alignment:
Q  82 agataagctcaaataagccaattcaaacaggccct 116  Q
    |||||||||||||||||||||| ||||||||||||    
T  1820079 agataagctcaaataagccaatccaaacaggccct 1820045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 69 - 111
Target Start/End: Original strand, 26878310 - 26878352
Alignment:
Q  69 aacttatgctagtagataagctcaaataagccaattcaaacag 111  Q
    ||||||||  ||||||||||||| |||||||||||||||||||    
T  26878310 aacttatgtcagtagataagctcgaataagccaattcaaacag 26878352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 68 - 110
Target Start/End: Complemental strand, 33046759 - 33046717
Alignment:
Q  68 aaacttatgctagtagataagctcaaataagccaattcaaaca 110  Q
    |||||||||| ||||||||| || |||||||||||||||||||    
T  33046759 aaacttatgccagtagataaactaaaataagccaattcaaaca 33046717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 79 - 113
Target Start/End: Original strand, 47132436 - 47132470
Alignment:
Q  79 agtagataagctcaaataagccaattcaaacaggc 113  Q
    ||||||||||||||||||||||||| |||||||||    
T  47132436 agtagataagctcaaataagccaatccaaacaggc 47132470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 109
Target Start/End: Complemental strand, 2304228 - 2304191
Alignment:
Q  72 ttatgctagtagataagctcaaataagccaattcaaac 109  Q
    |||||||||||||| || ||||||||||||||||||||    
T  2304228 ttatgctagtagatcagttcaaataagccaattcaaac 2304191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 113
Target Start/End: Complemental strand, 20170675 - 20170630
Alignment:
Q  68 aaacttatgctagtagataagctcaaataagccaattcaaacaggc 113  Q
    |||||||||  | ||||||||||||||||||||||| |||||||||    
T  20170675 aaacttatgtcactagataagctcaaataagccaatccaaacaggc 20170630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 109
Target Start/End: Complemental strand, 24085299 - 24085258
Alignment:
Q  68 aaacttatgctagtagataagctcaaataagccaattcaaac 109  Q
    ||||||||||  |||||||||||||||||||||||| |||||    
T  24085299 aaacttatgccggtagataagctcaaataagccaatccaaac 24085258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 117
Target Start/End: Original strand, 32663759 - 32663796
Alignment:
Q  80 gtagataagctcaaataagccaattcaaacaggcccta 117  Q
    |||||||||||||||||||||||| ||||||| |||||    
T  32663759 gtagataagctcaaataagccaatccaaacagacccta 32663796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 117
Target Start/End: Complemental strand, 36630996 - 36630963
Alignment:
Q  84 ataagctcaaataagccaattcaaacaggcccta 117  Q
    ||||||||||||||||||||||||||||| ||||    
T  36630996 ataagctcaaataagccaattcaaacaggtccta 36630963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 218
Target Start/End: Original strand, 37273181 - 37273274
Alignment:
Q  125 tgaaaacaacttatggacatgtcatcagatgtttttataagttttctccaacactttcacaagtacttatgttaaaatataagctcaaataagc 218  Q
    ||||||||||||||||||||||||| || |||||  ||||| | || | |||| | |||| ||| |||||| ||| | ||||| ||||||||||    
T  37273181 tgaaaacaacttatggacatgtcataagttgtttccataagctctcccaaacagtctcaccagtgcttatgctaataaataagttcaaataagc 37273274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 68 - 108
Target Start/End: Complemental strand, 4526338 - 4526298
Alignment:
Q  68 aaacttatgctagtagataagctcaaataagccaattcaaa 108  Q
    ||||||||||||||||| ||||| ||| |||||||||||||    
T  4526338 aaacttatgctagtagacaagctgaaaaaagccaattcaaa 4526298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 203 - 239
Target Start/End: Complemental strand, 10277290 - 10277254
Alignment:
Q  203 ataagctcaaataagctaatccaaacagacccttgtt 239  Q
    ||||||| |||||||| ||||||||||||||||||||    
T  10277290 ataagcttaaataagccaatccaaacagacccttgtt 10277254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 71 - 115
Target Start/End: Complemental strand, 19679286 - 19679242
Alignment:
Q  71 cttatgctagtagataagctcaaataagccaattcaaacaggccc 115  Q
    ||||||||||||||||| ||||||||| ||||| |||| ||||||    
T  19679286 cttatgctagtagataaactcaaataacccaatccaaataggccc 19679242  T

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Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 68 - 108
Target Start/End: Original strand, 21367776 - 21367816
Alignment:
Q  68 aaacttatgctagtagataagctcaaataagccaattcaaa 108  Q
    ||||||||||| |||||||| ||||||||||||||| ||||    
T  21367776 aaacttatgctggtagataatctcaaataagccaatccaaa 21367816  T

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Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 203 - 235
Target Start/End: Original strand, 32663763 - 32663795
Alignment:
Q  203 ataagctcaaataagctaatccaaacagaccct 235  Q
    |||||||||||||||| ||||||||||||||||    
T  32663763 ataagctcaaataagccaatccaaacagaccct 32663795  T

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Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 71 - 103
Target Start/End: Original strand, 36887638 - 36887670
Alignment:
Q  71 cttatgctagtagataagctcaaataagccaat 103  Q
    |||||||| ||||||||||||||||||||||||    
T  36887638 cttatgcttgtagataagctcaaataagccaat 36887670  T

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Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 125 - 217
Target Start/End: Original strand, 41452570 - 41452662
Alignment:
Q  125 tgaaaacaacttatggacatgtcatcagatgtttttataagttttctccaacactttcacaagtacttatgttaaaatataagctcaaataag 217  Q
    |||||||| ||||| ||||| |||| || ||||| |||||| | |||| || ||| |||||||||||||||| |  |||||  ||||||||||    
T  41452570 tgaaaacagcttatagacatatcataagttgtttctataaggtctctcaaatactctcacaagtacttatgtgagcatatagactcaaataag 41452662  T

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Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 117 - 149
Target Start/End: Complemental strand, 42817253 - 42817221
Alignment:
Q  117 atatatgctgaaaacaacttatggacatgtcat 149  Q
    ||||| |||||||||||||||||||||||||||    
T  42817253 atataagctgaaaacaacttatggacatgtcat 42817221  T

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Target: scaffold0020 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 78 - 115
Target Start/End: Complemental strand, 159924 - 159887
Alignment:
Q  78 tagtagataagctcaaataagccaattcaaacaggccc 115  Q
    |||||||||||||||||||||||||| |||||||||||    
T  159924 tagtagataagctcaaataagccaatccaaacaggccc 159887  T

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Target: scaffold0015 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 229
Target Start/End: Complemental strand, 69002 - 68898
Alignment:
Q  125 tgaaaacaacttatggacatgtcatcagatgtttttataagttttctccaacactttcacaagtacttatgttaaaatataagctcaaataagctaatcc 224  Q
    |||||||| ||||| ||||||||||  | |||||| |||||||||| | |||||| ||| |||| ||||||   | ||||||||||| |||| |||| ||    
T  69002 tgaaaacagcttatagacatgtcatacgctgttttcataagttttcccaaacactctcataagtgcttatgcctatatataagctcatataaactaaacc 68903  T
Q  225 aaaca 229  Q
    |||||    
T  68902 aaaca 68898  T

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