View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1441_low_26 (Length: 382)
Name: NF1441_low_26
Description: NF1441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1441_low_26 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 382
Target Start/End: Original strand, 23741013 - 23741393
Alignment:
| Q |
1 |
actttgtcgcaagacgatttggacttagccaattttgaccaaatctctctacaagcgcaataaggacatttttctaggtgggtttgaaatgacagaa--- |
97 |
Q |
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| T |
23741013 |
actttgtcgcaagatgatttggacttagccaattttgaccaaatctctctacaagcgcaataaggacatttttctaggtgggtttgaaataacagaataa |
23741112 |
T |
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| Q |
98 |
gactatcacaaacacttgcttaacatggcacaaaaggctctagacttccagacttttgaatatgaagaatcatatttctgcaccaaagaattttatcaat |
197 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23741113 |
gactatcacaaacatttgcttaacatggcacaaaaggctctagacttccatacttttgaatatgaagaatcatatttctgcaccaaagaattttatcaat |
23741212 |
T |
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| Q |
198 |
ggtggagtgaatattatttcactaactccactaatgagttgaatctacttccacaattaatagctatttttccttctcttcagaaaagaacgaagaaaag |
297 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23741213 |
ggtggagtgaatattatttcactaactccaccaatgagttgaatctgcttgcacaattaatagctatttttccttctcttcagaaaagaacgaagaaaag |
23741312 |
T |
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| Q |
298 |
tcgaggtacacatatgcatgcaagaaattcaagctttccagatttactttgaaattgtgtataatcctcaaaaacttagtagaat |
382 |
Q |
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||||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||||| |||||||||||| |||| |
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| T |
23741313 |
tcgaggtacacat----atgcaagaaattcaagctttccatatttacttttaaattgtgtataatccacaaaaacttagttgaat |
23741393 |
T |
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