View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1441_low_27 (Length: 382)
Name: NF1441_low_27
Description: NF1441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1441_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 122 - 366
Target Start/End: Complemental strand, 30020928 - 30020688
Alignment:
| Q |
122 |
ttaaatcaataaattcaaccattaaattaaataaaacttgttgagaagaataatttacttgtgatgttaaacaaaaccattttccccattctttttaatt |
221 |
Q |
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| T |
30020928 |
ttaaatcaataaattcaaccattaaattaaataaaacttgttgagaagaataatttacttgtgatgttaaacaaaaccattttccccattctttttaatt |
30020829 |
T |
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| Q |
222 |
ttgtcccgttatttccagctgtgagcagtgtgattcacgatggcttcaagttttcatcaatctttgggaatattatatcatgtcccaaatagtataatca |
321 |
Q |
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| T |
30020828 |
ttgtcccgttatttccagctgtgagcagtgtgattcacgttggcttcaagttttcatcaatctttgggaatatcatatcatgtcccaaatagtataatca |
30020729 |
T |
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| Q |
322 |
aatcatcacataattccaatccgtttaatttgcttatacatcaac |
366 |
Q |
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| T |
30020728 |
aattatcacataattccaatccgt----tttgcttatacatcaac |
30020688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 26 - 100
Target Start/End: Complemental strand, 30021586 - 30021512
Alignment:
| Q |
26 |
ttgttcttttacatattaatgatagtttttatagaatgacaaatatcgattggcaatcaaagtagttttttacat |
100 |
Q |
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|||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
30021586 |
ttgttcttttacatatcaatggtagtttttatagaatgacaaatatcgattggcaatcaaagtaattttttacat |
30021512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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