View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1441_low_28 (Length: 380)
Name: NF1441_low_28
Description: NF1441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1441_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 69 - 328
Target Start/End: Original strand, 22764468 - 22764727
Alignment:
| Q |
69 |
tatctctttgtatagacaaactagtttgccaattattcataaataattgtgtcgaagaaattaaagaaagaatatattataactgtaattgaagtgttaa |
168 |
Q |
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| T |
22764468 |
tatctctttgtatagacaaactagtttgccaattattcataaataattgtgtcgaagaaattaaagaaagaatatattataactgtaattgaagtgttaa |
22764567 |
T |
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| Q |
169 |
acactaaaccttaaaccatcatcatgtcggagacattaaagaaatagctggttaaatttccttgtaataaagaaggaagaaatatagctgcaattgaaag |
268 |
Q |
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| T |
22764568 |
acactaaaccttaaaccctcatcatgtcagagacattaaagaaatagctggttaaatttccttgtaataaagaaggaagaaatatagctgcaattgaaag |
22764667 |
T |
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| Q |
269 |
aatatataactgcaattcaagtgtttatgtgttgtaatcatgtcagagacattaaagaaa |
328 |
Q |
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| T |
22764668 |
aatatataactgcaattgaagtgttaatttgtggaaatcatgcctgagacattaaagaaa |
22764727 |
T |
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Back To:
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Target: chr8 (Bit Score: 126; Significance: 7e-65; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 51 - 291
Target Start/End: Original strand, 33080290 - 33080530
Alignment:
| Q |
51 |
gacaaacccttcagtctatatctctttgtatagacaaactagtttgccaattattcataaataattgtgtcgaagaaattaaagaaagaatatattataa |
150 |
Q |
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| T |
33080290 |
gacaaagccttcagtttatatctctttgtataga---actagtttgccaattattcataaataatcgtgtcaaaggcattaaagaaacaatatactataa |
33080386 |
T |
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| Q |
151 |
ctgtaattgaagt----gttaaacactaaaccttaaaccatcatcatgtcggagacattaaagaaatagctggttaaatttccttgtaataaagaaggaa |
246 |
Q |
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| T |
33080387 |
ctgcaattgaagttttaattaaacactaaaccgtaaaccctaatcatgtgggagacgttaaa-aaatagctggttaaatttccatgtaataaagaatgaa |
33080485 |
T |
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| Q |
247 |
gaaatatagctgcaattgaaagaatatataactgcaattcaagtg |
291 |
Q |
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| T |
33080486 |
gtaacatagctgcaattgaaagaatatataactgcaattgaagtg |
33080530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 249 - 369
Target Start/End: Original strand, 33095204 - 33095324
Alignment:
| Q |
249 |
aatatagctgcaattgaaagaatatataactgcaattcaagtgtttatgtgttgtaatcatgtcagagacattaaagaaagaatatataaatgcaaatga |
348 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33095204 |
aatatagctgcaattgaaagaatatataactgcaattgaagtgtttatgtgttgtaatcatgtcagagacattaaagaaagaatatataaatgcaaatga |
33095303 |
T |
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| Q |
349 |
agtgttattttattggttcat |
369 |
Q |
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| T |
33095304 |
agggttattttattggctcat |
33095324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 276 - 369
Target Start/End: Original strand, 33080665 - 33080758
Alignment:
| Q |
276 |
aactgcaattcaagtgtttatgtgttgtaatcatgtcagagacattaaagaaagaatatataaatgcaaatgaagtgttattttattggttcat |
369 |
Q |
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|||||||||| ||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |||||||| |||| |
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| T |
33080665 |
aactgcaattgaagtgttaatttgttgtaatcatgttggagacattaaagaaagaatatataaatgcaaatgaggtgttaatttattggctcat |
33080758 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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