View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1441_low_3 (Length: 604)
Name: NF1441_low_3
Description: NF1441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1441_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 554; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 554; E-Value: 0
Query Start/End: Original strand, 1 - 586
Target Start/End: Original strand, 25895761 - 25896346
Alignment:
| Q |
1 |
atgcaaacaagaaccaaaactggcattcctttacgtagattaggtcttagtgttttccttatccaaactgaacctaaatttgttaaacatgctcttaaat |
100 |
Q |
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| T |
25895761 |
atgcaaacaagaaccaaaactggcattcctttacgtagattaggtcctagtgttttccttatccaaactgaacctaaatttgttaaacatgctcttaaat |
25895860 |
T |
|
| Q |
101 |
acccaatgtggttggcagctatgaaaaaggaatattcagctctatagaagaataaaacttggtctcttgtgcctcttccacccaagagaactgcaattgg |
200 |
Q |
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| T |
25895861 |
acccgatgtggttggcagctatgaaagaggaatattcagctctatagaagaataaaacttggtctcttgtgcctcttccacccaacagaactgcaattgg |
25895960 |
T |
|
| Q |
201 |
atgcaaatggatgtttagggtcaaagaaaatgcagatgggaccctaaattagtaaaaagccatgttagtagcctagggttatcatctacttcatggtttt |
300 |
Q |
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| T |
25895961 |
atgcaaatgggtgtttagggtcaaagaaaatgcagatgggaccctaaattagtaaaaagccaggttagtagcctagggttatcatctacttcatggtttt |
25896060 |
T |
|
| Q |
301 |
gattatcatgaaactttttctccagtcataaagcctgctgttactatcagattgatcctcacattggctctcacatataagtggccacttcagcagctgg |
400 |
Q |
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| T |
25896061 |
gattatcatgaaactttttctccagtcataaagcctgctgttactatcagattgatcctcacattggctctcacatataagtggccacttcagcagctgg |
25896160 |
T |
|
| Q |
401 |
acattaataatgcctttctcaatggcattcttgttgaggaagtctatatggaacaaccccctgggtttgtctcctctgaccctaatctagtttgtcatct |
500 |
Q |
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| T |
25896161 |
acattaataatgcctttctcaatggcattcttgatgaggaagtctatatggaacaaccccctgggtttgtctcctctgatcctaatctagtttgtcatct |
25896260 |
T |
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| Q |
501 |
gcacaaggctttatatggcttgaaacaagcacccagacaatggtttgaaaggctgaaaggcactctcattgagtttggcttctgtc |
586 |
Q |
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| T |
25896261 |
gcacaaggctttatatggcttgaaacaagcacccagacaatggtttgaaaggctgaaaggcactctcattgagtttggcttctgtc |
25896346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 157 - 231
Target Start/End: Complemental strand, 6870639 - 6870565
Alignment:
| Q |
157 |
acttggtctcttgtgcctcttccacccaagagaactgcaattggatgcaaatggatgtttagggtcaaagaaaat |
231 |
Q |
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| T |
6870639 |
acttggtcacttgtgccccttccacccaacagaaaagctattggttgtaaatgggtgtttaggataaaagaaaat |
6870565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 157 - 231
Target Start/End: Original strand, 39581529 - 39581603
Alignment:
| Q |
157 |
acttggtctcttgtgcctcttccacccaagagaactgcaattggatgcaaatggatgtttagggtcaaagaaaat |
231 |
Q |
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| T |
39581529 |
acttggtcacttgtgccccttccacccaacagaaaagctattggttgtaaatgggtgtttaggataaaagaaaat |
39581603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 455
Target Start/End: Original strand, 39581737 - 39581818
Alignment:
| Q |
374 |
catataagtggccacttcagcagctggacattaataatgcctttctcaatggcattcttgttgaggaagtctatatggaaca |
455 |
Q |
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| T |
39581737 |
catacaagtggccacttcaacagctggatgttaataatgccttcttaaatggcatccttgaggaagaagtgtatatgcaaca |
39581818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 108 - 185
Target Start/End: Original strand, 26529981 - 26530058
Alignment:
| Q |
108 |
gtggttggcagctatgaaaaaggaatattcagctctatagaagaataaaacttggtctcttgtgcctcttccacccaa |
185 |
Q |
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|||||||||||||||| || ||||||| || | || |||| |||||||| ||||| |||||||||||||| ||||| |
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| T |
26529981 |
gtggttggcagctatgcaagaggaatactctacccttgagaaaaataaaacatggtcccttgtgcctcttccccccaa |
26530058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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