View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1441_low_32 (Length: 374)

Name: NF1441_low_32
Description: NF1441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1441_low_32
NF1441_low_32
[»] chr5 (28 HSPs)
chr5 (12-356)||(30072292-30072639)
chr5 (229-356)||(18452418-18452545)
chr5 (12-113)||(16622514-16622614)
chr5 (12-113)||(26329907-26330007)
chr5 (12-113)||(11274167-11274268)
chr5 (13-86)||(19763750-19763823)
chr5 (12-85)||(18452677-18452750)
chr5 (12-85)||(7742735-7742808)
chr5 (12-113)||(17027704-17027804)
chr5 (12-110)||(25594533-25594630)
chr5 (17-113)||(24841935-24842030)
chr5 (18-113)||(22229986-22230081)
chr5 (12-85)||(16634223-16634296)
chr5 (226-335)||(17028654-17028763)
chr5 (15-82)||(22643773-22643840)
chr5 (15-86)||(23157668-23157739)
chr5 (235-352)||(25594254-25594371)
chr5 (15-99)||(24517525-24517609)
chr5 (27-106)||(25680778-25680857)
chr5 (12-86)||(18178278-18178352)
chr5 (12-86)||(26070650-26070724)
chr5 (20-61)||(17695352-17695393)
chr5 (274-342)||(17381615-17381683)
chr5 (15-59)||(20694819-20694863)
chr5 (241-300)||(26329705-26329764)
chr5 (274-352)||(12265202-12265280)
chr5 (18-66)||(12339899-12339947)
chr5 (289-345)||(25681048-25681104)
[»] chr1 (38 HSPs)
chr1 (12-113)||(11769831-11769932)
chr1 (18-113)||(12423752-12423847)
chr1 (12-82)||(25494357-25494427)
chr1 (12-113)||(50047351-50047452)
chr1 (18-113)||(23519606-23519701)
chr1 (13-96)||(30675662-30675744)
chr1 (18-86)||(30781942-30782010)
chr1 (12-74)||(25727785-25727847)
chr1 (12-74)||(25736193-25736255)
chr1 (12-86)||(26854184-26854258)
chr1 (12-82)||(52271113-52271183)
chr1 (12-113)||(9328344-9328444)
chr1 (26-109)||(26657666-26657749)
chr1 (12-113)||(9353189-9353289)
chr1 (12-86)||(15298735-15298808)
chr1 (12-86)||(25373922-25373996)
chr1 (28-113)||(9252447-9252532)
chr1 (20-61)||(27461070-27461111)
chr1 (12-96)||(18300857-18300941)
chr1 (12-82)||(19257674-19257742)
chr1 (12-97)||(23223589-23223675)
chr1 (9-71)||(25730450-25730512)
chr1 (17-86)||(23505938-23506006)
chr1 (12-85)||(26102233-26102306)
chr1 (12-61)||(31313728-31313777)
chr1 (284-354)||(9353409-9353479)
chr1 (268-354)||(25726262-25726348)
chr1 (268-354)||(25734670-25734756)
chr1 (282-352)||(34533074-34533144)
chr1 (12-57)||(15416866-15416911)
chr1 (268-333)||(27460497-27460562)
chr1 (281-354)||(30675871-30675944)
chr1 (21-67)||(18391267-18391314)
chr1 (23-86)||(25126667-25126730)
chr1 (19-86)||(25665634-25665701)
chr1 (285-354)||(18300639-18300708)
chr1 (20-57)||(31319504-31319541)
chr1 (284-344)||(23519340-23519400)
[»] chr7 (38 HSPs)
chr7 (12-113)||(29544696-29544797)
chr7 (13-113)||(20470647-20470747)
chr7 (12-110)||(20017130-20017227)
chr7 (12-113)||(9801712-9801812)
chr7 (12-109)||(21545668-21545765)
chr7 (40-113)||(7815527-7815600)
chr7 (10-113)||(315346-315450)
chr7 (12-108)||(10670417-10670512)
chr7 (18-113)||(21471978-21472072)
chr7 (236-354)||(21545451-21545568)
chr7 (12-82)||(23125077-23125147)
chr7 (12-113)||(7494873-7494973)
chr7 (10-109)||(20446375-20446475)
chr7 (18-113)||(7493495-7493590)
chr7 (12-86)||(1074629-1074703)
chr7 (12-58)||(12358655-12358701)
chr7 (18-96)||(22067657-22067735)
chr7 (274-329)||(26839793-26839848)
chr7 (12-86)||(18496741-18496815)
chr7 (274-354)||(4092086-4092166)
chr7 (274-345)||(7777696-7777767)
chr7 (15-86)||(24596868-24596939)
chr7 (12-67)||(30405770-30405825)
chr7 (32-94)||(9070584-9070646)
chr7 (25-86)||(8308900-8308961)
chr7 (20-61)||(14649680-14649721)
chr7 (46-86)||(4828998-4829038)
chr7 (226-354)||(9070814-9070942)
chr7 (13-61)||(10253629-10253677)
chr7 (284-356)||(20017429-20017501)
chr7 (12-71)||(5312665-5312724)
chr7 (18-96)||(2630331-2630409)
chr7 (282-352)||(20470372-20470442)
chr7 (12-53)||(9761313-9761353)
chr7 (281-354)||(10670133-10670206)
chr7 (281-329)||(3400267-3400315)
chr7 (32-96)||(7777895-7777959)
chr7 (29-61)||(28951863-28951895)
[»] chr2 (26 HSPs)
chr2 (18-113)||(30998953-30999048)
chr2 (19-113)||(27417100-27417194)
chr2 (20-97)||(16593604-16593681)
chr2 (12-86)||(18236167-18236241)
chr2 (20-86)||(18818886-18818952)
chr2 (248-331)||(21844444-21844527)
chr2 (18-113)||(25474219-25474314)
chr2 (13-82)||(21505007-21505076)
chr2 (248-333)||(21842815-21842900)
chr2 (12-71)||(14921918-14921977)
chr2 (26-85)||(22525685-22525744)
chr2 (12-86)||(17415028-17415101)
chr2 (12-86)||(19541213-19541286)
chr2 (12-85)||(31274132-31274205)
chr2 (12-84)||(24188146-24188217)
chr2 (12-80)||(31262173-31262241)
chr2 (18-113)||(35707985-35708080)
chr2 (12-86)||(1732727-1732801)
chr2 (46-86)||(34063705-34063745)
chr2 (20-110)||(1733275-1733365)
chr2 (274-348)||(15829536-15829610)
chr2 (267-333)||(21504198-21504264)
chr2 (12-61)||(24047558-24047608)
chr2 (12-61)||(17152330-17152379)
chr2 (38-71)||(19949436-19949469)
chr2 (20-61)||(21848963-21849004)
[»] chr6 (16 HSPs)
chr6 (12-110)||(30355493-30355591)
chr6 (12-85)||(26499712-26499785)
chr6 (18-113)||(17860286-17860381)
chr6 (18-86)||(15575106-15575174)
chr6 (224-352)||(19670214-19670342)
chr6 (12-67)||(33638262-33638317)
chr6 (12-67)||(33638388-33638443)
chr6 (12-86)||(24507307-24507380)
chr6 (34-95)||(15998708-15998769)
chr6 (274-328)||(13723840-13723894)
chr6 (12-70)||(24618059-24618117)
chr6 (248-333)||(12971971-12972056)
chr6 (12-61)||(14924307-14924356)
chr6 (12-61)||(16439634-16439683)
chr6 (20-61)||(26512668-26512709)
chr6 (20-61)||(26517784-26517825)
[»] chr4 (36 HSPs)
chr4 (28-110)||(17026537-17026619)
chr4 (12-86)||(31859765-31859839)
chr4 (18-113)||(15192385-15192480)
chr4 (18-113)||(51884784-51884879)
chr4 (12-109)||(12111169-12111265)
chr4 (16-113)||(18898163-18898259)
chr4 (12-113)||(47024603-47024703)
chr4 (33-113)||(1695684-1695764)
chr4 (22-113)||(25315069-25315160)
chr4 (18-113)||(27302959-27303054)
chr4 (15-113)||(5906600-5906698)
chr4 (12-86)||(19601975-19602048)
chr4 (249-354)||(12110924-12111029)
chr4 (12-85)||(17187349-17187422)
chr4 (274-354)||(15192667-15192747)
chr4 (12-82)||(33519206-33519276)
chr4 (16-86)||(34864160-34864229)
chr4 (17-86)||(13064607-13064676)
chr4 (28-110)||(5676392-5676474)
chr4 (12-86)||(21077409-21077483)
chr4 (28-113)||(10320058-10320143)
chr4 (12-86)||(23353797-23353868)
chr4 (235-327)||(34863884-34863976)
chr4 (249-312)||(5676646-5676709)
chr4 (12-86)||(7024083-7024157)
chr4 (12-86)||(22119797-22119870)
chr4 (12-86)||(26159932-26160005)
chr4 (10-86)||(9782849-9782925)
chr4 (20-61)||(46647379-46647420)
chr4 (284-354)||(17024523-17024593)
chr4 (20-61)||(13275631-13275672)
chr4 (284-333)||(21077716-21077765)
chr4 (49-86)||(29437674-29437711)
chr4 (12-61)||(32021970-32022018)
chr4 (280-308)||(25314884-25314912)
chr4 (229-333)||(47024368-47024472)
[»] chr3 (27 HSPs)
chr3 (15-113)||(10341966-10342064)
chr3 (12-82)||(19219079-19219149)
chr3 (18-110)||(25883285-25883377)
chr3 (248-354)||(10342165-10342271)
chr3 (274-352)||(19218794-19218872)
chr3 (21-113)||(11521350-11521442)
chr3 (11-113)||(1475117-1475220)
chr3 (15-86)||(18474349-18474420)
chr3 (15-86)||(19542988-19543059)
chr3 (22-111)||(18065982-18066072)
chr3 (12-85)||(19263769-19263845)
chr3 (12-89)||(2729484-2729563)
chr3 (18-86)||(12573472-12573540)
chr3 (18-86)||(13549936-13550004)
chr3 (235-333)||(2729204-2729302)
chr3 (15-86)||(5632407-5632477)
chr3 (12-86)||(8402415-8402490)
chr3 (274-333)||(16970882-16970941)
chr3 (18-113)||(21018059-21018154)
chr3 (12-111)||(23908110-23908209)
chr3 (12-61)||(25188934-25188983)
chr3 (45-113)||(33914405-33914473)
chr3 (12-67)||(11475023-11475078)
chr3 (12-71)||(16970638-16970697)
chr3 (18-113)||(27415350-27415444)
chr3 (12-58)||(21829025-21829071)
chr3 (12-69)||(28422629-28422685)
[»] chr8 (33 HSPs)
chr8 (18-113)||(16054476-16054571)
chr8 (12-110)||(16052117-16052215)
chr8 (12-110)||(28901190-28901287)
chr8 (18-97)||(13081788-13081867)
chr8 (12-113)||(11310094-11310193)
chr8 (229-329)||(23893494-23893595)
chr8 (22-113)||(28902275-28902366)
chr8 (12-86)||(28291965-28292039)
chr8 (14-79)||(14424684-14424749)
chr8 (12-85)||(32239464-32239537)
chr8 (12-84)||(6888059-6888131)
chr8 (274-354)||(15213351-15213431)
chr8 (12-86)||(30543937-30544012)
chr8 (12-82)||(29291946-29292016)
chr8 (12-86)||(30850964-30851038)
chr8 (12-109)||(5569981-5570078)
chr8 (15-70)||(28859119-28859174)
chr8 (12-86)||(5153934-5154008)
chr8 (27-113)||(24120415-24120501)
chr8 (26-86)||(22894396-22894456)
chr8 (12-86)||(31436649-31436719)
chr8 (282-333)||(5569790-5569841)
chr8 (12-86)||(12956657-12956732)
chr8 (12-67)||(13583403-13583458)
chr8 (12-86)||(11437596-11437670)
chr8 (12-85)||(24696758-24696832)
chr8 (12-110)||(14976952-14977047)
chr8 (248-352)||(16051900-16052004)
chr8 (289-333)||(24927475-24927519)
chr8 (12-86)||(27097666-27097738)
chr8 (248-330)||(24120669-24120751)
chr8 (280-354)||(32239708-32239782)
chr8 (24-113)||(29047178-29047267)
[»] scaffold0171 (2 HSPs)
scaffold0171 (12-85)||(21574-21647)
scaffold0171 (18-97)||(6377-6456)
[»] scaffold0190 (1 HSPs)
scaffold0190 (13-84)||(11564-11635)
[»] scaffold0011 (1 HSPs)
scaffold0011 (12-86)||(228051-228124)
[»] scaffold0650 (1 HSPs)
scaffold0650 (12-113)||(5607-5707)
[»] scaffold0362 (1 HSPs)
scaffold0362 (16-109)||(7799-7892)
[»] scaffold0282 (1 HSPs)
scaffold0282 (12-113)||(22451-22551)
[»] scaffold0188 (1 HSPs)
scaffold0188 (12-96)||(26809-26893)
[»] scaffold1149 (1 HSPs)
scaffold1149 (27-86)||(1978-2037)
[»] scaffold0386 (2 HSPs)
scaffold0386 (35-113)||(8546-8624)
scaffold0386 (15-113)||(11636-11734)
[»] scaffold0337 (1 HSPs)
scaffold0337 (12-86)||(1985-2058)
[»] scaffold0185 (1 HSPs)
scaffold0185 (20-86)||(2684-2750)
[»] scaffold0065 (1 HSPs)
scaffold0065 (12-86)||(12421-12494)
[»] scaffold0002 (1 HSPs)
scaffold0002 (18-71)||(447158-447211)


Alignment Details
Target: chr5 (Bit Score: 268; Significance: 1e-149; HSPs: 28)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 12 - 356
Target Start/End: Original strand, 30072292 - 30072639
Alignment:
Q  12 atgaagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttccaaacggaagaacg 111  Q
    ||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  30072292 atgaagattgaagattaatggttcttaaaaggtttttaaagacaatacaaagtgaagaaatttcatttcaagttcgtatgcgtttccaaacggaagaacg 30072391  T
Q  112 atnnnnnnnnnnnnnn---gggatgaaaacgcaagatttcacacacagggactgtctcatgtgccactatcgcatgaggcagtgttaccactgccccagg 208  Q
    ||                 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30072392 ataaaaaaaaaaaaaaaaagggatgaaaacgcaagatttcacacacagggactgtctcatgtgccactatcgcatgaggcagtgttaccactgccccagg 30072491  T
Q  209 cgtctcctgcacacgactgtgggcataaattgcctgcaacttgtttttcaagctaaaacggtggtaaaagctcagttttcttctcttaaaccttaagtaa 308  Q
    || ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30072492 cgcctcatgcacacgactgtgggcataaattgcctgcaacttgtttttcaagctaaaacggtggtaaaagctcagttttcttctcttaaaccttaagtaa 30072591  T
Q  309 tcatttaatataaatagagacccttttacacattatttttcattcata 356  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||    
T  30072592 tcatttaatataaatagagacccttgtacacattatttttcattcata 30072639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 229 - 356
Target Start/End: Complemental strand, 18452545 - 18452418
Alignment:
Q  229 gggcataaattgcctgcaacttgtttttcaagctaaaacggtggtaaaagctcagttttcttctcttaaaccttaagtaatcatttaatataaatagaga 328  Q
    |||||||||||| ||||| ||||||||||||||||||||||||| ||||||  | ||||||||||||||||||||||| |||||||  | ||||||||||    
T  18452545 gggcataaattgtctgcagcttgtttttcaagctaaaacggtggaaaaagccaaattttcttctcttaaaccttaagtgatcatttgttgtaaatagaga 18452446  T
Q  329 cccttttacacattatttttcattcata 356  Q
    | |||  |||||||||| ||||||||||    
T  18452445 ctcttgcacacattattattcattcata 18452418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 12 - 113
Target Start/End: Complemental strand, 16622614 - 16622514
Alignment:
Q  12 atgaagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttccaaacggaagaacg 111  Q
    |||||||||||||| || ||||||||| |||||||| |||||||||||||| |||||||| ||||||||||||||||| ||||||||| | |||||||||    
T  16622614 atgaagattgaagaccagtggttcttagaaggtttt-gaagacaatacaaattgaagaaaattcatttcaagttcgtaggagtttccagatggaagaacg 16622516  T
Q  112 at 113  Q
    ||    
T  16622515 at 16622514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 12 - 113
Target Start/End: Complemental strand, 26330007 - 26329907
Alignment:
Q  12 atgaagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttccaaacggaagaacg 111  Q
    ||||||||||||| |||||||| |||| ||||||||| |||||||||||||||||||||| |||||||||||||| || |||||| || |||||||||||    
T  26330007 atgaagattgaag-tcaatggtccttagaaggttttttaagacaatacaaagtgaagaaaattcatttcaagttcctaggagttttcagacggaagaacg 26329909  T
Q  112 at 113  Q
    ||    
T  26329908 at 26329907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 12 - 113
Target Start/End: Complemental strand, 11274268 - 11274167
Alignment:
Q  12 atgaagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttccaaacggaagaacg 111  Q
    |||||||||||||| |||||||||||| ||||| ||||||||||||||||  ||| ||||||||||||||||||| || |||||| ||  ||||||||||    
T  11274268 atgaagattgaagaccaatggttcttagaaggtctttgaagacaatacaagatgatgaaatttcatttcaagttcctaggagttttcatgcggaagaacg 11274169  T
Q  112 at 113  Q
    ||    
T  11274168 at 11274167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 13 - 86
Target Start/End: Complemental strand, 19763823 - 19763750
Alignment:
Q  13 tgaagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttc 86  Q
    ||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||    
T  19763823 tgaagattgaagatcaagggttcttagaaggtttttgaagataatacaaagtgaagaaaattcatttcaagttc 19763750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 12 - 85
Target Start/End: Complemental strand, 18452750 - 18452677
Alignment:
Q  12 atgaagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagtt 85  Q
    ||||| ||||||||||||||||||||| ||||||||| || ||||||||||||||||||| |||||||||||||    
T  18452750 atgaaaattgaagatcaatggttcttataaggttttttaaaacaatacaaagtgaagaaaattcatttcaagtt 18452677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 12 - 85
Target Start/End: Complemental strand, 7742808 - 7742735
Alignment:
Q  12 atgaagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagtt 85  Q
    ||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||||||  || |||||||||    
T  7742808 atgaagactgaagatcaatggttcttagaaggtctttgaagacaatacaaagtgaagaaaaatcgtttcaagtt 7742735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 12 - 113
Target Start/End: Original strand, 17027704 - 17027804
Alignment:
Q  12 atgaagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttccaaacggaagaacg 111  Q
    ||||||||||||| | |||| |||||| |||||| ||||||||||||||||||||||||| || ||||||| ||| || ||||||||| ||| |||||||    
T  17027704 atgaagattgaagtt-aatgcttcttagaaggttcttgaagacaatacaaagtgaagaaaattaatttcaatttcctaggagtttccatacgaaagaacg 17027802  T
Q  112 at 113  Q
    ||    
T  17027803 at 17027804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 12 - 110
Target Start/End: Complemental strand, 25594630 - 25594533
Alignment:
Q  12 atgaagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttccaaacggaagaac 110  Q
    |||||||||||| |||||||| | ||| |||||||||| ||| ||| ||||||||||||| |||| ||||||||| || ||||||||| ||||||||||    
T  25594630 atgaagattgaatatcaatggatattagaaggtttttgtagataatgcaaagtgaagaaaattca-ttcaagttcctaggagtttccagacggaagaac 25594533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 113
Target Start/End: Original strand, 24841935 - 24842030
Alignment:
Q  17 gattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttccaaacggaagaacgat 113  Q
    |||||||| ||||||||||||| |||| |||||||||||| ||||| |||||||| ||||||||| |||| || ||||||||| |||  ||||||||    
T  24841935 gattgaag-tcaatggttcttagaaggattttgaagacaacacaaaatgaagaaaattcatttcatgttcctaggagtttccagacgacagaacgat 24842030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 18 - 113
Target Start/End: Original strand, 22229986 - 22230081
Alignment:
Q  18 attgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttccaaacggaagaacgat 113  Q
    |||||||||||| |||||||| |||||| ||||||| ||||| |||||||||||   ||| |||||||| || |||||| || |||||||||||||    
T  22229986 attgaagatcaagggttcttagaaggttgttgaagataataccaagtgaagaaaacacatctcaagttcctaggagttttcagacggaagaacgat 22230081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 12 - 85
Target Start/End: Original strand, 16634223 - 16634296
Alignment:
Q  12 atgaagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagtt 85  Q
    |||||| ||||||| |||||||||||| |||||||||||||| |||||||  |||| ||| |||||||||||||    
T  16634223 atgaagtttgaagaccaatggttcttagaaggtttttgaagaaaatacaagatgaaaaaaattcatttcaagtt 16634296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 226 - 335
Target Start/End: Original strand, 17028654 - 17028763
Alignment:
Q  226 tgtgggcataaattgcctgcaacttgtttttcaagctaaaacggtggtaaaagctcagttttcttctcttaaaccttaagtaatcatttaatataaatag 325  Q
    |||||||| ||||||||||||  ||  ||||||||  ||||  |||| |||| |  ||||||||||||||||||| |||||||||||||  |||||||||    
T  17028654 tgtgggcagaaattgcctgcagtttagttttcaagtcaaaattgtggaaaaaacctagttttcttctcttaaaccctaagtaatcattttctataaatag 17028753  T
Q  326 agaccctttt 335  Q
    | ||||||||    
T  17028754 ataccctttt 17028763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 82
Target Start/End: Complemental strand, 22643840 - 22643773
Alignment:
Q  15 aagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaa 82  Q
    |||||| || |||| ||||||||||||||| |||||| |||||||||| |||||||| ||||||||||    
T  22643840 aagattaaatatcagtggttcttaaaaggtatttgaatacaatacaaactgaagaaaattcatttcaa 22643773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 86
Target Start/End: Complemental strand, 23157739 - 23157668
Alignment:
Q  15 aagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttc 86  Q
    |||||||||| ||||||||||||| ||||| ||| ||||||| | |||||||||||| ||||||| ||||||    
T  23157739 aagattgaagttcaatggttcttataaggtatttaaagacaacagaaagtgaagaaagttcatttaaagttc 23157668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 235 - 352
Target Start/End: Complemental strand, 25594371 - 25594254
Alignment:
Q  235 aaattgcctgcaacttgtttttcaagctaaaacggtggtaaaagctcagttttcttctcttaaaccttaagtaatcatttaatataaatagagacccttt 334  Q
    |||||||| | | ||||||||||||| | ||||||||| ||| || || ||||||||||||||||| ||||||| ||| |  ||| |||||| ||||||     
T  25594371 aaattgcccgtagcttgtttttcaagatgaaacggtggaaaaggcccacttttcttctcttaaaccctaagtaagcatatgctatcaatagacacccttg 25594272  T
Q  335 tacacattatttttcatt 352  Q
     ||| |||||| ||||||    
T  25594271 aacatattattattcatt 25594254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 15 - 99
Target Start/End: Original strand, 24517525 - 24517609
Alignment:
Q  15 aagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttcca 99  Q
    ||||||| ||| |||||||| | | ||||||||| |||| |||| |||| ||||||| |||||||||||||| || |||||||||    
T  24517525 aagattgcagaccaatggttatcataaggttttttaagataatagaaagcgaagaaaattcatttcaagttcctaggagtttcca 24517609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 27 - 106
Target Start/End: Original strand, 25680778 - 25680857
Alignment:
Q  27 caatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttccaaacggaa 106  Q
    |||| ||||||| |||||||| ||| |||||||||||| |||||| ||||||||| |||  || ||||||||| ||||||    
T  25680778 caatagttcttagaaggttttagaaaacaatacaaagtaaagaaaattcatttcaggtttctaggagtttccagacggaa 25680857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 18178278 - 18178352
Alignment:
Q  12 atgaagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttc 86  Q
    |||||||||||||| |||| ||||||  ||||| |||||||| |||||||| |||| ||| ||||| ||||||||    
T  18178278 atgaagattgaagaccaattgttcttggaaggtctttgaagataatacaaattgaataaaattcatctcaagttc 18178352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 26070650 - 26070724
Alignment:
Q  12 atgaagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttc 86  Q
    |||||||||||||||| ||||||| || |||||||||||||||||| |||  |  ||||| |||| |||||||||    
T  26070650 atgaagattgaagatctatggttcgtataaggtttttgaagacaatgcaagttagagaaaattcagttcaagttc 26070724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 61
Target Start/End: Complemental strand, 17695393 - 17695352
Alignment:
Q  20 tgaagatcaatggttcttaaaaggtttttgaagacaatacaa 61  Q
    ||||||||||||||| ||| ||||||||||||||||||||||    
T  17695393 tgaagatcaatggttattagaaggtttttgaagacaatacaa 17695352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 274 - 342
Target Start/End: Complemental strand, 17381683 - 17381615
Alignment:
Q  274 aaaagctcagttttcttctcttaaaccttaagtaatcatttaatataaatagagacccttttacacatt 342  Q
    |||| |||||||||||||||||||||  || ||||||||  | |||||||||||||||||  |||||||    
T  17381683 aaaaactcagttttcttctcttaaacactatgtaatcatacattataaatagagacccttacacacatt 17381615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 20694819 - 20694863
Alignment:
Q  15 aagattgaagatcaatggttcttaaaaggtttttgaagacaatac 59  Q
    |||||||||||| ||||||||||| ||||| ||||||||||||||    
T  20694819 aagattgaagataaatggttcttagaaggtatttgaagacaatac 20694863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 241 - 300
Target Start/End: Complemental strand, 26329764 - 26329705
Alignment:
Q  241 cctgcaacttgtttttcaagctaaaacggtggtaaaagctcagttttcttctcttaaacc 300  Q
    ||||||||||||||| ||||||  | |||||  |||||||||||||||||||| ||||||    
T  26329764 cctgcaacttgttttccaagctggatcggtgcaaaaagctcagttttcttctcctaaacc 26329705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 274 - 352
Target Start/End: Complemental strand, 12265280 - 12265202
Alignment:
Q  274 aaaagctcagttttcttctcttaaaccttaagtaatcatttaatataaatagagacccttttacacattatttttcatt 352  Q
    |||| |||||||||||||| |||||||||||||||| ||||  |||||  ||||| ||||  ||||| |||| ||||||    
T  12265280 aaaatctcagttttcttcttttaaaccttaagtaattatttgctataataagagatccttgcacacaatattattcatt 12265202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 12339947 - 12339899
Alignment:
Q  18 attgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtga 66  Q
    |||||| ||||| |||||||| |||||  ||||||||||||||||||||    
T  12339947 attgaaaatcaagggttcttagaaggtcgttgaagacaatacaaagtga 12339899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 345
Target Start/End: Original strand, 25681048 - 25681104
Alignment:
Q  289 ttctcttaaaccttaagtaatcatttaatataaatagagacccttttacacattatt 345  Q
    |||||||||||| |||| ||||||||  ||||||||||||| |||  ||||||||||    
T  25681048 ttctcttaaaccctaagaaatcatttgctataaatagagacacttgcacacattatt 25681104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 82; Significance: 1e-38; HSPs: 38)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 12 - 113
Target Start/End: Complemental strand, 11769932 - 11769831
Alignment:
Q  12 atgaagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttccaaacggaagaacg 111  Q
    |||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |||||||||||    
T  11769932 atgaagattgaagaccaatggttcttagaaggtttttgaagacaatacaaagtgaagaaaattcatttcaagttcctatgagtttccagacggaagaacg 11769833  T
Q  112 at 113  Q
    ||    
T  11769832 at 11769831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 18 - 113
Target Start/End: Complemental strand, 12423847 - 12423752
Alignment:
Q  18 attgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttccaaacggaagaacgat 113  Q
    |||||||||||| |||||||| |||||| |||||||||||||||||||||| || |||||||||||||| || |||||| |||||| |||||||||    
T  12423847 attgaagatcaaaggttcttagaaggttgttgaagacaatacaaagtgaaggaaattcatttcaagttcctaggagttttcaaacgaaagaacgat 12423752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 12 - 82
Target Start/End: Complemental strand, 25494427 - 25494357
Alignment:
Q  12 atgaagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaa 82  Q
    |||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||    
T  25494427 atgaagattgaagaccaatggttcttagaaggtttttgaagacaatacaaagtgaagaaaattcatttcaa 25494357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 12 - 113
Target Start/End: Original strand, 50047351 - 50047452
Alignment:
Q  12 atgaagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttccaaacggaagaacg 111  Q
    ||||| |||||||||||||||| ||||||||||| |||||||||||||||| |||||||| ||||||| |||||| || |||||| | ||| ||||||||    
T  50047351 atgaatattgaagatcaatggtacttaaaaggttattgaagacaatacaaaatgaagaaaattcattttaagttcctaggagttttcgaacagaagaacg 50047450  T
Q  112 at 113  Q
    ||    
T  50047451 at 50047452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 18 - 113
Target Start/End: Complemental strand, 23519701 - 23519606
Alignment:
Q  18 attgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttccaaacggaagaacgat 113  Q
    |||||||| |||||||||||| |||||| |||||||||||| |||||||||||| || ||||||||||| || |||||| || |||||||||||||    
T  23519701 attgaagaccaatggttcttagaaggttgttgaagacaatagaaagtgaagaaaatttatttcaagttcctaggagttttcagacggaagaacgat 23519606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 13 - 96
Target Start/End: Original strand, 30675662 - 30675744
Alignment:
Q  13 tgaagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagttt 96  Q
    ||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||| || ||||||    
T  30675662 tgaagattgaa-atcaatggttcttagaaggtttttgaagataatacaaagtgaagaaaattcatttcaagttcctaggagttt 30675744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 30781942 - 30782010
Alignment:
Q  18 attgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttc 86  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||||||||||| || |||||||||||    
T  30781942 attgaagatcaagggttcttaaaaggttgttgaagacaatacaaagtgaagaaaattgatttcaagttc 30782010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 12 - 74
Target Start/End: Complemental strand, 25727847 - 25727785
Alignment:
Q  12 atgaagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaattt 74  Q
    ||||||||||||||||||||||||||  |||||||||||||||||| ||||||||||||||||    
T  25727847 atgaagattgaagatcaatggttcttggaaggtttttgaagacaatccaaagtgaagaaattt 25727785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 12 - 74
Target Start/End: Complemental strand, 25736255 - 25736193
Alignment:
Q  12 atgaagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaattt 74  Q
    ||||||||||||||||||||||||||  |||||||||||||||||| ||||||||||||||||    
T  25736255 atgaagattgaagatcaatggttcttggaaggtttttgaagacaatccaaagtgaagaaattt 25736193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 26854258 - 26854184
Alignment:
Q  12 atgaagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttc 86  Q
    ||||||||||||| ||||||||||||| ||| | |||||||||||||||||||||||||| ||||||| ||||||    
T  26854258 atgaagattgaagttcaatggttcttagaagatatttgaagacaatacaaagtgaagaaaattcatttgaagttc 26854184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 12 - 82
Target Start/End: Complemental strand, 52271183 - 52271113
Alignment:
Q  12 atgaagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaa 82  Q
    ||||||||||||| |||||||| |||| ||||| |||||||||||||||||||||||||| ||||||||||    
T  52271183 atgaagattgaagttcaatggtacttagaaggtatttgaagacaatacaaagtgaagaaaattcatttcaa 52271113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 12 - 113
Target Start/End: Original strand, 9328344 - 9328444
Alignment:
Q  12 atgaagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttccaaacggaagaacg 111  Q
    ||||||||||||  ||||| ||||||| |||||||||||||||||||| ||||||||||| |||| | ||||||| || ||||||||| | |||||||||    
T  9328344 atgaagattgaat-tcaatcgttcttagaaggtttttgaagacaatactaagtgaagaaaattcagtccaagttcctaggagtttccatatggaagaacg 9328442  T
Q  112 at 113  Q
    ||    
T  9328443 at 9328444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 26 - 109
Target Start/End: Original strand, 26657666 - 26657749
Alignment:
Q  26 tcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttccaaacggaagaa 109  Q
    ||||| ||||||| ||||||||||||||||| |||||||||||||| |||||||||||||| || |||||| || ||| |||||    
T  26657666 tcaatagttcttataaggtttttgaagacaaaacaaagtgaagaaaattcatttcaagttcctaggagttttcagacgaaagaa 26657749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 12 - 113
Target Start/End: Original strand, 9353189 - 9353289
Alignment:
Q  12 atgaagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttccaaacggaagaacg 111  Q
    ||||||||||||  |||||  |||||| |||||||||||||| ||||| ||||||||||| |||| | ||||||| |||||||||||| | |||||||||    
T  9353189 atgaagattgaat-tcaatcattcttagaaggtttttgaagaaaatactaagtgaagaaaattcagtccaagttcctatgagtttccatatggaagaacg 9353287  T
Q  112 at 113  Q
    ||    
T  9353288 at 9353289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 15298808 - 15298735
Alignment:
Q  12 atgaagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttc 86  Q
    ||||||||| ||||||||||||||||||||| | ||||||| |||||||| ||||| ||| ||||||||||||||    
T  15298808 atgaagattcaagatcaatggttcttaaaagttatttgaag-caatacaatgtgaataaaattcatttcaagttc 15298735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 25373922 - 25373996
Alignment:
Q  12 atgaagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttc 86  Q
    ||||||||| |||| |||||||||||| |||||| || ||||||||||||  |||||||| ||||||||||||||    
T  25373922 atgaagattaaagaccaatggttcttagaaggttgtttaagacaatacaagatgaagaaaattcatttcaagttc 25373996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 28 - 113
Target Start/End: Complemental strand, 9252532 - 9252447
Alignment:
Q  28 aatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttccaaacggaagaacgat 113  Q
    ||||||| ||| |||||||||||||||||||| ||||||||||| |||| | ||||||| ||||||||| || |  ||||||||||    
T  9252532 aatggttattagaaggtttttgaagacaatactaagtgaagaaaattcagtccaagttcctatgagttttcagattgaagaacgat 9252447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 20 - 61
Target Start/End: Complemental strand, 27461111 - 27461070
Alignment:
Q  20 tgaagatcaatggttcttaaaaggtttttgaagacaatacaa 61  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  27461111 tgaagatcaatggttcttaaaaggtttttgaagacaatacaa 27461070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 12 - 96
Target Start/End: Complemental strand, 18300941 - 18300857
Alignment:
Q  12 atgaagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagttt 96  Q
    ||||||||| || | |||||||||||| ||||||||||||||||||||| ||||||||||  | ||||||| ||| || ||||||    
T  18300941 atgaagattaaataccaatggttcttagaaggtttttgaagacaatacagagtgaagaaaaattatttcaaattcctaggagttt 18300857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 82
Target Start/End: Complemental strand, 19257742 - 19257674
Alignment:
Q  12 atgaagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaa 82  Q
    |||||||||||| |||||  ||||||| ||||| |||||||||||||||||||||||||| || |||||||    
T  19257742 atgaagattgaacatcaa--gttcttagaaggtctttgaagacaatacaaagtgaagaaaatttatttcaa 19257674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 12 - 97
Target Start/End: Original strand, 23223589 - 23223675
Alignment:
Q  12 atgaagattgaagatcaatggttcttaaaaggtttt-tgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttc 97  Q
    |||||||||||| | ||||  ||| || |||||||| |||||||||||||||||||| ||| |||||||||||||| || |||||||    
T  23223589 atgaagattgaaaaccaataattcatagaaggttttttgaagacaatacaaagtgaaaaaaattcatttcaagttcctaggagtttc 23223675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 9 - 71
Target Start/End: Complemental strand, 25730512 - 25730450
Alignment:
Q  9 gagatgaagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaa 71  Q
    |||||||||||| ||||||||||||||||  ||||||||||| ||||||  ||||||||||||    
T  25730512 gagatgaagatttaagatcaatggttcttggaaggtttttgacgacaatcgaaagtgaagaaa 25730450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 86
Target Start/End: Original strand, 23505938 - 23506006
Alignment:
Q  17 gattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttc 86  Q
    ||||||||||||||||| |||  |||   |||||||||||||||||||||||||| ||||||||||||||    
T  23505938 gattgaagatcaatggt-cttggaagacatttgaagacaatacaaagtgaagaaaattcatttcaagttc 23506006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 85
Target Start/End: Original strand, 26102233 - 26102306
Alignment:
Q  12 atgaagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagtt 85  Q
    ||||||| |||||||||||| || ||| ||||||||||||||||||||||  ||| |||| ||||| |||||||    
T  26102233 atgaagaatgaagatcaatgatttttagaaggtttttgaagacaatacaagttgaggaaaattcatctcaagtt 26102306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 61
Target Start/End: Original strand, 31313728 - 31313777
Alignment:
Q  12 atgaagattgaagatcaatggttcttaaaaggtttttgaagacaatacaa 61  Q
    ||||||| |||||||||||| |||||| ||||||||||||||||||||||    
T  31313728 atgaagaatgaagatcaatgattcttataaggtttttgaagacaatacaa 31313777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 284 - 354
Target Start/End: Original strand, 9353409 - 9353479
Alignment:
Q  284 ttttcttctcttaaaccttaagtaatcatttaatataaatagagacccttttacacattatttttcattca 354  Q
    ||||||||||||||| | |||||||||||||  |||| ||| ||||||||  || ||||||||||||||||    
T  9353409 ttttcttctcttaaatcctaagtaatcattttctatatataaagacccttgcactcattatttttcattca 9353479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 268 - 354
Target Start/End: Complemental strand, 25726348 - 25726262
Alignment:
Q  268 ggtggtaaaagctcagttttcttctcttaaaccttaagtaatcatttaatataaatagagacccttttacacattatttttcattca 354  Q
    ||||| |||| ||| |||||||||||||||||| ||||||||||| |  |||||| | ||||| ||  |||||||||| ||||||||    
T  25726348 ggtggaaaaaactctgttttcttctcttaaaccctaagtaatcatatgttataaacaaagacctttacacacattattattcattca 25726262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 268 - 354
Target Start/End: Complemental strand, 25734756 - 25734670
Alignment:
Q  268 ggtggtaaaagctcagttttcttctcttaaaccttaagtaatcatttaatataaatagagacccttttacacattatttttcattca 354  Q
    ||||| |||| ||| |||||||||||||||||| ||||||||||| |  |||||| | ||||| ||  |||||||||| ||||||||    
T  25734756 ggtggaaaaaactctgttttcttctcttaaaccctaagtaatcatatgttataaacaaagacctttacacacattattattcattca 25734670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 282 - 352
Target Start/End: Original strand, 34533074 - 34533144
Alignment:
Q  282 agttttcttctcttaaaccttaagtaatcatttaatataaatagagacccttttacacattatttttcatt 352  Q
    ||||||||||||||||||  ||||||||||| | |||||||||||||| |||  ||||||| || ||||||    
T  34533074 agttttcttctcttaaactctaagtaatcatatgatataaatagagactcttgcacacattcttattcatt 34533144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 12 - 57
Target Start/End: Complemental strand, 15416911 - 15416866
Alignment:
Q  12 atgaagattgaagatcaatggttcttaaaaggtttttgaagacaat 57  Q
    ||||||| ||||||||||||||||||| ||||||||| ||||||||    
T  15416911 atgaagaatgaagatcaatggttcttataaggtttttaaagacaat 15416866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 268 - 333
Target Start/End: Complemental strand, 27460562 - 27460497
Alignment:
Q  268 ggtggtaaaagctcagttttcttctcttaaaccttaagtaatcatttaatataaatagagaccctt 333  Q
    ||||| ||||||| |||||||||||||||| || |||||||| ||  | |||||||||||||||||    
T  27460562 ggtggaaaaagcttagttttcttctcttaacccctaagtaatgatccactataaatagagaccctt 27460497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 281 - 354
Target Start/End: Original strand, 30675871 - 30675944
Alignment:
Q  281 cagttttcttctcttaaaccttaagtaatcatttaatataaatagagacccttttacacattatttttcattca 354  Q
    ||||||| |||||||||||| ||||||||||| |  |||||||||||||| ||  || |||||| |||||||||    
T  30675871 cagttttattctcttaaaccctaagtaatcatatgctataaatagagaccattgcactcattatatttcattca 30675944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 21 - 67
Target Start/End: Original strand, 18391267 - 18391314
Alignment:
Q  21 gaagatcaatggttcttaaaagg-tttttgaagacaatacaaagtgaa 67  Q
    ||||||||||||||||||||||| ||||| ||||||||||||| ||||    
T  18391267 gaagatcaatggttcttaaaaggtttttttaagacaatacaaaatgaa 18391314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 23 - 86
Target Start/End: Original strand, 25126667 - 25126730
Alignment:
Q  23 agatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttc 86  Q
    |||||||| ||||||| ||  | |||||| |||||||||| |||||||| ||||||||||||||    
T  25126667 agatcaatagttcttagaaaatctttgaatacaatacaaaatgaagaaaattcatttcaagttc 25126730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 25665701 - 25665634
Alignment:
Q  19 ttgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttc 86  Q
    |||||| ||||||||||||| ||  | ||| ||||||||||||||||||||||  |||||| ||||||    
T  25665701 ttgaagttcaatggttcttataaaatatttaaagacaatacaaagtgaagaaaaatcatttgaagttc 25665634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 354
Target Start/End: Complemental strand, 18300708 - 18300639
Alignment:
Q  285 tttcttctcttaaaccttaagtaatcatttaatataaatagagacccttttacacattatttttcattca 354  Q
    |||||||||||||||| ||||||||||| |  |||||||| | || |||  ||||||||||||| |||||    
T  18300708 tttcttctcttaaaccctaagtaatcatatgttataaatataaacacttgcacacattattttttattca 18300639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 31319541 - 31319504
Alignment:
Q  20 tgaagatcaatggttcttaaaaggtttttgaagacaat 57  Q
    ||||||||||||||||||| ||| ||||||||||||||    
T  31319541 tgaagatcaatggttcttagaagttttttgaagacaat 31319504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 284 - 344
Target Start/End: Complemental strand, 23519400 - 23519340
Alignment:
Q  284 ttttcttctcttaaaccttaagtaatcatttaatataaatagagacccttttacacattat 344  Q
    |||||||||||||||||  |||||| ||| |  |||||||||||||||||  |||||||||    
T  23519400 ttttcttctcttaaacccaaagtaaccatatgctataaatagagacccttgcacacattat 23519340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 74; Significance: 7e-34; HSPs: 38)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 12 - 113
Target Start/End: Original strand, 29544696 - 29544797
Alignment:
Q  12 atgaagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttccaaacggaagaacg 111  Q
    |||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |||||||||||||| || |||||| || |||||||||||    
T  29544696 atgaagattgaagatcaatgattcttagaaggtttttgaagacaatacaaagtgaagaaaattcatttcaagttcctaggagttttcagacggaagaacg 29544795  T
Q  112 at 113  Q
    ||    
T  29544796 at 29544797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 13 - 113
Target Start/End: Complemental strand, 20470747 - 20470647
Alignment:
Q  13 tgaagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttccaaacggaagaacga 112  Q
    |||| ||||||| ||||||||||||| |||||| |||||||||||||||| |||||||| || |||||||||||||||||||||||| || |||||||||    
T  20470747 tgaatattgaagttcaatggttcttagaaggttcttgaagacaatacaaaatgaagaaaattgatttcaagttcgtatgagtttccagacagaagaacga 20470648  T
Q  113 t 113  Q
    |    
T  20470647 t 20470647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 12 - 110
Target Start/End: Original strand, 20017130 - 20017227
Alignment:
Q  12 atgaagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttccaaacggaagaac 110  Q
    ||||||||||||  ||||||||||||| |||||| ||||||||||||||||||||||||| |||||||||||||| || |||||| |||||| ||||||    
T  20017130 atgaagattgaac-tcaatggttcttagaaggttcttgaagacaatacaaagtgaagaaaattcatttcaagttcctaggagtttacaaacgaaagaac 20017227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 12 - 113
Target Start/End: Complemental strand, 9801812 - 9801712
Alignment:
Q  12 atgaagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttccaaacggaagaacg 111  Q
    ||||||||||||| ||||||||||||||||||||||| |||| |||||||||||| |||| || ||||||||||| || |||||| |||| |||||||||    
T  9801812 atgaagattgaag-tcaatggttcttaaaaggtttttaaagaaaatacaaagtgaggaaaatttatttcaagttcctaggagttttcaaatggaagaacg 9801714  T
Q  112 at 113  Q
    ||    
T  9801713 at 9801712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 12 - 109
Target Start/End: Complemental strand, 21545765 - 21545668
Alignment:
Q  12 atgaagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttccaaacggaagaa 109  Q
    ||||||||||||||||||||||||||| || || ||||||||||||| |||||||||||| |||||||||||||  || ||||||||| ||| |||||    
T  21545765 atgaagattgaagatcaatggttcttagaaagtatttgaagacaataaaaagtgaagaaaattcatttcaagtttctaggagtttccagacgaaagaa 21545668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 40 - 113
Target Start/End: Original strand, 7815527 - 7815600
Alignment:
Q  40 aaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttccaaacggaagaacgat 113  Q
    |||||| ||||||||||||||||||||||||| |||||||||||||| || |||||| || |||||||||||||    
T  7815527 aaggttgttgaagacaatacaaagtgaagaaaattcatttcaagttcataggagttttcagacggaagaacgat 7815600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 10 - 113
Target Start/End: Original strand, 315346 - 315450
Alignment:
Q  10 agatgaaga-ttgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttccaaacggaaga 108  Q
    ||||||||| ||||||| |||  ||||||  |||||| ||||||||||||||||||||| ||| |||||||||||||| || ||||||||| ||| ||||    
T  315346 agatgaagagttgaagaacaacagttctttgaaggttgttgaagacaatacaaagtgaataaaattcatttcaagttcctaggagtttccagacgaaaga 315445  T
Q  109 acgat 113  Q
    |||||    
T  315446 acgat 315450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 12 - 108
Target Start/End: Complemental strand, 10670512 - 10670417
Alignment:
Q  12 atgaagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttccaaacggaaga 108  Q
    |||||||| |||| ||||||||||||| ||||||||  |||||||||||||||||| |||  |||||||||||||||| |||||| || ||||||||    
T  10670512 atgaagatcgaag-tcaatggttcttagaaggttttctaagacaatacaaagtgaataaaaatcatttcaagttcgtaggagttttcagacggaaga 10670417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 113
Target Start/End: Original strand, 21471978 - 21472072
Alignment:
Q  18 attgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttccaaacggaagaacgat 113  Q
    ||||||||| || |||||||| |||||| ||||||| |||||||||||| |||| |||||||||||||| || |||||| || |||||||||||||    
T  21471978 attgaagataaagggttcttagaaggttattgaagaaaatacaaagtgacgaaa-ttcatttcaagttcctaggagttttcatacggaagaacgat 21472072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 236 - 354
Target Start/End: Complemental strand, 21545568 - 21545451
Alignment:
Q  236 aattgcctgcaacttgtttttcaagctaaaacggtggtaaaagctcagttttcttctcttaaaccttaagtaatcatttaatataaatagagaccctttt 335  Q
    |||||||  |||||||||||||||||||| ||||||| |||  | || |||||||||||||| || |||||||||||||  ||||||||||||||| |      
T  21545568 aattgcccacaacttgtttttcaagctaacacggtggaaaattc-caattttcttctcttaacccctaagtaatcattttctataaatagagacccgtac 21545470  T
Q  336 acacattatttttcattca 354  Q
    |||||||||| ||| ||||    
T  21545469 acacattattattctttca 21545451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 12 - 82
Target Start/End: Original strand, 23125077 - 23125147
Alignment:
Q  12 atgaagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaa 82  Q
    ||||||||||||| ||||||||||||| ||| || || |||||||||||||||||||||| ||||||||||    
T  23125077 atgaagattgaagttcaatggttcttataagattcttaaagacaatacaaagtgaagaaaattcatttcaa 23125147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 12 - 113
Target Start/End: Original strand, 7494873 - 7494973
Alignment:
Q  12 atgaagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttccaaacggaagaacg 111  Q
    ||||||||||||| | ||||||||||| |||||   |||||||||||||||||||||||| || |||||||| |  || ||||||||| |||||||||||    
T  7494873 atgaagattgaagtt-aatggttcttagaaggtccatgaagacaatacaaagtgaagaaaatttatttcaagattctaggagtttccagacggaagaacg 7494971  T
Q  112 at 113  Q
    ||    
T  7494972 at 7494973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 10 - 109
Target Start/End: Original strand, 20446375 - 20446475
Alignment:
Q  10 agatgaaga-ttgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttccaaacggaaga 108  Q
    ||||||||| ||||||||||| |||||||| |||||| ||||||||||||||||||||| |||  |||||| |||||| || |||| | |||| ||||||    
T  20446375 agatgaagaattgaagatcaagggttcttagaaggttgttgaagacaatacaaagtgaaaaaaaatcattttaagttcataagagtattcaaatggaaga 20446474  T
Q  109 a 109  Q
    |    
T  20446475 a 20446475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 18 - 113
Target Start/End: Original strand, 7493495 - 7493590
Alignment:
Q  18 attgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttccaaacggaagaacgat 113  Q
    |||||||||||| ||||||||||||||| ||||||| |||||||| |||| ||| |||||| ||| ||  || |||||| |||| |||||||||||    
T  7493495 attgaagatcaagggttcttaaaaggttattgaagataatacaaaatgaaaaaaattcattccaaatttctaggagttttcaaagggaagaacgat 7493590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 1074629 - 1074703
Alignment:
Q  12 atgaagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttc 86  Q
    ||||| |||||||| ||||||||||||||||||| |||||||||||||||  ||||||||  | |||||||||||    
T  1074629 atgaaaattgaagaccaatggttcttaaaaggttgttgaagacaatacaagatgaagaaaagtaatttcaagttc 1074703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 58
Target Start/End: Complemental strand, 12358701 - 12358655
Alignment:
Q  12 atgaagattgaagatcaatggttcttaaaaggtttttgaagacaata 58  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||    
T  12358701 atgaagattgaagatcaatggttcttagaaggtttttgaagacaata 12358655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 96
Target Start/End: Complemental strand, 22067735 - 22067657
Alignment:
Q  18 attgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagttt 96  Q
    |||||| ||||| |||||||| |||||| ||||||||||||||||||||| | | |||||||||||||| || ||||||    
T  22067735 attgaaaatcaagggttcttagaaggttgttgaagacaatacaaagtgaaaagaattcatttcaagttcctaggagttt 22067657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 274 - 329
Target Start/End: Complemental strand, 26839848 - 26839793
Alignment:
Q  274 aaaagctcagttttcttctcttaaaccttaagtaatcatttaatataaatagagac 329  Q
    ||||||||||||||||||||||||||| |||||||||||||  |||||||| ||||    
T  26839848 aaaagctcagttttcttctcttaaaccctaagtaatcatttgctataaataaagac 26839793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 18496741 - 18496815
Alignment:
Q  12 atgaagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttc 86  Q
    ||||||||||||||  ||||||||||| || ||| ||||||| |||||||  |||||||| ||||||||||||||    
T  18496741 atgaagattgaagaataatggttcttagaatgttgttgaagaaaatacaagatgaagaaaattcatttcaagttc 18496815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 274 - 354
Target Start/End: Complemental strand, 4092166 - 4092086
Alignment:
Q  274 aaaagctcagttttcttctcttaaaccttaagtaatcatttaatataaatagagacccttttacacattatttttcattca 354  Q
    |||| ||||||||||| ||||| |  | ||||||||||| |  |||||||||||||||||| |||||||||| ||||||||    
T  4092166 aaaaactcagttttctactcttcagacctaagtaatcatatgttataaatagagaccctttcacacattattattcattca 4092086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 274 - 345
Target Start/End: Complemental strand, 7777767 - 7777696
Alignment:
Q  274 aaaagctcagttttcttctcttaaaccttaagtaatcatttaatataaatagagacccttttacacattatt 345  Q
    ||||||||||||||||| ||||||||| ||||||| ||| |  |||||||| ||||||||  ||||||||||    
T  7777767 aaaagctcagttttcttatcttaaaccctaagtaaccatatgctataaataaagacccttgcacacattatt 7777696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 86
Target Start/End: Complemental strand, 24596939 - 24596868
Alignment:
Q  15 aagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttc 86  Q
    |||||||||| ||| |||||| || |||   |||||||||||||||||||||||||| ||||||| ||||||    
T  24596939 aagattgaagttcagtggttcatagaagaaatttgaagacaatacaaagtgaagaaaattcatttgaagttc 24596868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 12 - 67
Target Start/End: Original strand, 30405770 - 30405825
Alignment:
Q  12 atgaagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaa 67  Q
    ||||||||||||| |||||| |||||| ||||| |||||| |||||||||||||||    
T  30405770 atgaagattgaagttcaatgattcttagaaggtatttgaatacaatacaaagtgaa 30405825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 94
Target Start/End: Original strand, 9070584 - 9070646
Alignment:
Q  32 gttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagt 94  Q
    ||||||| ||||||||| ||||||||| |||||||||||  |||| |||||||||||| ||||    
T  9070584 gttcttagaaggttttttaagacaatataaagtgaagaatattcagttcaagttcgtaggagt 9070646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 25 - 86
Target Start/End: Complemental strand, 8308961 - 8308900
Alignment:
Q  25 atcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttc 86  Q
    |||||||||||||| ||||| ||||||||||||||||| | |||||  ||||| ||||||||    
T  8308961 atcaatggttcttagaaggtctttgaagacaatacaaaataaagaagattcatatcaagttc 8308900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 61
Target Start/End: Original strand, 14649680 - 14649721
Alignment:
Q  20 tgaagatcaatggttcttaaaaggtttttgaagacaatacaa 61  Q
    ||||||||||||||| ||| ||||||||||||||||||||||    
T  14649680 tgaagatcaatggttattagaaggtttttgaagacaatacaa 14649721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 86
Target Start/End: Original strand, 4828998 - 4829038
Alignment:
Q  46 tttgaagacaatacaaagtgaagaaatttcatttcaagttc 86  Q
    |||||||||||||||||||||||| | ||||||||||||||    
T  4828998 tttgaagacaatacaaagtgaagataattcatttcaagttc 4829038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 354
Target Start/End: Original strand, 9070814 - 9070942
Alignment:
Q  226 tgtgggcataaattgcctgcaacttgtttttcaagctaaaacggtggtaaaagctcagttttcttctcttaaaccttaagtaatcatttaatataaatag 325  Q
    |||||||| |||||||||||| ||| |||  ||||||  |  ||||  |||||| ||  |||||||||||||| | ||||||||| |||  |||||||||    
T  9070814 tgtgggcagaaattgcctgcagcttatttggcaagctggattggtgcaaaaagcacaaatttcttctcttaaaacctaagtaatccttttctataaatag 9070913  T
Q  326 agacccttttacacattatttttcattca 354  Q
    ||||||||  ||  |||||| ||||||||    
T  9070914 agacccttgcacttattattattcattca 9070942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 61
Target Start/End: Complemental strand, 10253677 - 10253629
Alignment:
Q  13 tgaagattgaagatcaatggttcttaaaaggtttttgaagacaatacaa 61  Q
    ||||||||||||||||||| | |||| | ||||||||||||||||||||    
T  10253677 tgaagattgaagatcaatgatacttatagggtttttgaagacaatacaa 10253629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 284 - 356
Target Start/End: Original strand, 20017429 - 20017501
Alignment:
Q  284 ttttcttctcttaaaccttaagtaatcatttaatataaatagagacccttttacacattatttttcattcata 356  Q
    ||||||||||| ||||| ||||||||||| |  || ||||| ||||| ||  |||||||||||||||||||||    
T  20017429 ttttcttctctaaaaccctaagtaatcatatgctacaaataaagacctttacacacattatttttcattcata 20017501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 12 - 71
Target Start/End: Complemental strand, 5312724 - 5312665
Alignment:
Q  12 atgaagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaa 71  Q
    |||| ||||||| || ||||||||||| ||| ||||||||||||||||||  ||||||||    
T  5312724 atgaggattgaacataaatggttcttagaagatttttgaagacaatacaagatgaagaaa 5312665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 96
Target Start/End: Complemental strand, 2630409 - 2630331
Alignment:
Q  18 attgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagttt 96  Q
    |||||||||||| |||||||||  |||| || ||||||||| ||| |||||| | || ||||||||||| || ||||||    
T  2630409 attgaagatcaagggttcttaattggttgttaaagacaataaaaattgaagacaattaatttcaagttcctaggagttt 2630331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 352
Target Start/End: Complemental strand, 20470442 - 20470372
Alignment:
Q  282 agttttcttctcttaaaccttaagtaatcatttaatataaatagagacccttttacacattatttttcatt 352  Q
    ||||||||||| ||||||| ||||||||||| |  |||||||| ||||| ||| ||| |||||| ||||||    
T  20470442 agttttcttctattaaaccctaagtaatcatatgttataaataaagaccatttaacaaattattattcatt 20470372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 53
Target Start/End: Complemental strand, 9761353 - 9761313
Alignment:
Q  12 atgaagattgaagatcaatggttcttaaaaggtttttgaaga 53  Q
    ||||||||||||| ||||||||||||||||||||||| ||||    
T  9761353 atgaagattgaag-tcaatggttcttaaaaggtttttaaaga 9761313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 354
Target Start/End: Complemental strand, 10670206 - 10670133
Alignment:
Q  281 cagttttcttctcttaaaccttaagtaatcatttaatataaatagagacccttttacacattatttttcattca 354  Q
    ||||| ||||||| |||||| ||   ||||||||  |||||||||||||||||  || ||||||||||||||||    
T  10670206 cagttatcttctcctaaaccctacccaatcattttctataaatagagacccttgcactcattatttttcattca 10670133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 329
Target Start/End: Original strand, 3400267 - 3400315
Alignment:
Q  281 cagttttcttctcttaaaccttaagtaatcatttaatataaatagagac 329  Q
    |||||||||||||||||||| |||||| |||| |  |||||||||||||    
T  3400267 cagttttcttctcttaaaccctaagtagtcatatgctataaatagagac 3400315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 96
Target Start/End: Complemental strand, 7777959 - 7777895
Alignment:
Q  32 gttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagttt 96  Q
    |||||||||||||| |||| ||||||| ||||||||||||  ||||  ||||||| || ||||||    
T  7777959 gttcttaaaaggttgttgaggacaatataaagtgaagaaaaatcataccaagttcctaagagttt 7777895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 61
Target Start/End: Complemental strand, 28951895 - 28951863
Alignment:
Q  29 atggttcttaaaaggtttttgaagacaatacaa 61  Q
    ||||| |||||||||||||||||||||||||||    
T  28951895 atggtacttaaaaggtttttgaagacaatacaa 28951863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 3e-30; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 18 - 113
Target Start/End: Original strand, 30998953 - 30999048
Alignment:
Q  18 attgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttccaaacggaagaacgat 113  Q
    |||||||||||| |||||||| |||||| ||||||||||||||||||| ||||| |||||||||||||| ||||||||| ||||||||||||||||    
T  30998953 attgaagatcaagggttcttagaaggttgttgaagacaatacaaagtggagaaaattcatttcaagttcatatgagttttcaaacggaagaacgat 30999048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 19 - 113
Target Start/End: Complemental strand, 27417194 - 27417100
Alignment:
Q  19 ttgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttccaaacggaagaacgat 113  Q
    ||||||| |||||||||| | |||||||||||| ||||||||||||||||||| ||||||||||||||  | ||||||||| |||||||||||||    
T  27417194 ttgaagaccaatggttctaagaaggtttttgaaaacaatacaaagtgaagaaaattcatttcaagttccaaggagtttccagacggaagaacgat 27417100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 20 - 97
Target Start/End: Complemental strand, 16593681 - 16593604
Alignment:
Q  20 tgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttc 97  Q
    |||||||||| |||||||| |||||| ||||||||||||||||||||||||| |||||||||||||| || |||||||    
T  16593681 tgaagatcaagggttcttagaaggttgttgaagacaatacaaagtgaagaaaattcatttcaagttcctaggagtttc 16593604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 18236241 - 18236167
Alignment:
Q  12 atgaagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttc 86  Q
    |||||||||||||  |||||||||||| |||||| |||||||||||||||  |||||||| ||||||||||||||    
T  18236241 atgaagattgaaggccaatggttcttagaaggttgttgaagacaatacaagatgaagaaaattcatttcaagttc 18236167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 20 - 86
Target Start/End: Original strand, 18818886 - 18818952
Alignment:
Q  20 tgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttc 86  Q
    ||||||| ||||||||||| ||||| |||||||||||||||||||||||||| |||| |||||||||    
T  18818886 tgaagattaatggttcttagaaggtctttgaagacaatacaaagtgaagaaaattcaattcaagttc 18818952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 248 - 331
Target Start/End: Complemental strand, 21844527 - 21844444
Alignment:
Q  248 cttgtttttcaagctaaaacggtggtaaaagctcagttttcttctcttaaaccttaagtaatcatttaatataaatagagaccc 331  Q
    ||||||||||||| || | |||||| |||| | |||||||||||||||||||| |||||||| ||| |||||||||||| ||||    
T  21844527 cttgtttttcaagttagatcggtggaaaaaacacagttttcttctcttaaaccctaagtaataattcaatataaatagaaaccc 21844444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 18 - 113
Target Start/End: Original strand, 25474219 - 25474314
Alignment:
Q  18 attgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttccaaacggaagaacgat 113  Q
    ||||||| |||| |||||||| |||||| |||||||||||| |||||||||||| ||||||||| |||| ||  |||||||| | | |||||||||    
T  25474219 attgaaggtcaagggttcttagaaggttgttgaagacaatataaagtgaagaaaattcatttcaggttcctagtagtttccagatgaaagaacgat 25474314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 13 - 82
Target Start/End: Complemental strand, 21505076 - 21505007
Alignment:
Q  13 tgaagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaa 82  Q
    ||||| ||||||| |||||||||| | ||||||||||||||||||||||  |||||||| ||||||||||    
T  21505076 tgaagtttgaagaccaatggttctgagaaggtttttgaagacaatacaagttgaagaaaattcatttcaa 21505007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 248 - 333
Target Start/End: Complemental strand, 21842900 - 21842815
Alignment:
Q  248 cttgtttttcaagctaaaacggtggtaaaagctcagttttcttctcttaaaccttaagtaatcatttaatataaatagagaccctt 333  Q
    ||||||||||||| || | |||||| |||| | |||||||||||||||||||| |||||||| ||| |||||||| ||| ||||||    
T  21842900 cttgtttttcaagttagatcggtggaaaaaacacagttttcttctcttaaaccctaagtaataattcaatataaacagaaaccctt 21842815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 71
Target Start/End: Complemental strand, 14921977 - 14921918
Alignment:
Q  12 atgaagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaa 71  Q
    ||||||||||||| ||||||||||||| ||||| | || |||||||||||||||||||||    
T  14921977 atgaagattgaagttcaatggttcttagaaggtatatgtagacaatacaaagtgaagaaa 14921918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 26 - 85
Target Start/End: Complemental strand, 22525744 - 22525685
Alignment:
Q  26 tcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagtt 85  Q
    ||||||||||||| ||||| ||||||||||| |||||||||||||| || ||||||||||    
T  22525744 tcaatggttcttagaaggtatttgaagacaacacaaagtgaagaaaatttatttcaagtt 22525685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 17415101 - 17415028
Alignment:
Q  12 atgaagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttc 86  Q
    |||||||||||| ||||||||||||||  || | ||||||||||| | |||||||||||| ||||||||||||||    
T  17415101 atgaagattgaa-atcaatggttcttaggagttatttgaagacaacaaaaagtgaagaaaattcatttcaagttc 17415028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 19541213 - 19541286
Alignment:
Q  12 atgaagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttc 86  Q
    |||||||||||||| |||||||||||| |||| | || ||||||||||||||| |||||  ||||||||||||||    
T  19541213 atgaagattgaagaccaatggttcttataagg-tattaaagacaatacaaagttaagaatcttcatttcaagttc 19541286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 85
Target Start/End: Original strand, 31274132 - 31274205
Alignment:
Q  12 atgaagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagtt 85  Q
    ||||| ||||||||| ||||||||||| ||||| ||||||||||||| ||  |||||||| |||||| ||||||    
T  31274132 atgaaaattgaagattaatggttcttagaaggtctttgaagacaatataagttgaagaaaattcattccaagtt 31274205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 12 - 84
Target Start/End: Original strand, 24188146 - 24188217
Alignment:
Q  12 atgaagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagt 84  Q
    |||||||||||||| |||| | ||||| || ||||||||||||||||||||||||||||  |||||| |||||    
T  24188146 atgaagattgaaga-caatagatcttagaaagtttttgaagacaatacaaagtgaagaagattcattccaagt 24188217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 12 - 80
Target Start/End: Original strand, 31262173 - 31262241
Alignment:
Q  12 atgaagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttc 80  Q
    ||||||||||||||| |||||||||||  |||| ||||||||||||| ||  |||||||| ||||||||    
T  31262173 atgaagattgaagattaatggttcttagtaggtctttgaagacaatataagttgaagaaaattcatttc 31262241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 113
Target Start/End: Original strand, 35707985 - 35708080
Alignment:
Q  18 attgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttccaaacggaagaacgat 113  Q
    |||||| ||||| | |||||| |||||| |||||||||||||||| |||| ||| || |||||||||||  | |||||| || ||| |||||||||    
T  35707985 attgaatatcaaggtttcttagaaggttgttgaagacaatacaaaatgaacaaaatttatttcaagttctcaggagttttcagacgaaagaacgat 35708080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 1732727 - 1732801
Alignment:
Q  12 atgaagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttc 86  Q
    |||||||||||||||||||| |||||| ||  | ||||||| ||||||||| |||| ||| || |||||||||||    
T  1732727 atgaagattgaagatcaatgattcttagaatatatttgaaggcaatacaaaatgaataaaatttatttcaagttc 1732801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 86
Target Start/End: Complemental strand, 34063745 - 34063705
Alignment:
Q  46 tttgaagacaatacaaagtgaagaaatttcatttcaagttc 86  Q
    |||||||||||||||||||||||||| ||||||| ||||||    
T  34063745 tttgaagacaatacaaagtgaagaaaattcatttgaagttc 34063705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 110
Target Start/End: Original strand, 1733275 - 1733365
Alignment:
Q  20 tgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttccaaacggaagaac 110  Q
    ||||||||||  ||||||| || ||| ||||||| ||||||||||||| ||| ||||||| |  ||| || |||||| || ||||||||||    
T  1733275 tgaagatcaagagttcttagaatgttgttgaagataatacaaagtgaataaaattcattttagattcctaggagttttcagacggaagaac 1733365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 274 - 348
Target Start/End: Original strand, 15829536 - 15829610
Alignment:
Q  274 aaaagctcagttttcttctcttaaaccttaagtaatcatttaatataaatagagacccttttacacattattttt 348  Q
    |||||| || ||||||||||||||||| ||| |||| |||  |||||||||||||| |||  | |||||||||||    
T  15829536 aaaagcccaattttcttctcttaaaccataactaattattggatataaatagagacgcttgcagacattattttt 15829610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 267 - 333
Target Start/End: Complemental strand, 21504264 - 21504198
Alignment:
Q  267 cggtggtaaaagctcagttttcttctcttaaaccttaagtaatcatttaatataaatagagaccctt 333  Q
    |||||| ||||||||||||||||||||||||| |  ||||||||||    |||||||||| ||||||    
T  21504264 cggtggaaaaagctcagttttcttctcttaaatccgaagtaatcataggttataaatagataccctt 21504198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 61
Target Start/End: Original strand, 24047558 - 24047608
Alignment:
Q  12 atgaagattgaagatcaatggttct-taaaaggtttttgaagacaatacaa 61  Q
    ||||||| |||||||||||||||||  ||||||||| ||||||||||||||    
T  24047558 atgaagaatgaagatcaatggttctcaaaaaggtttgtgaagacaatacaa 24047608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 61
Target Start/End: Original strand, 17152330 - 17152379
Alignment:
Q  12 atgaagattgaagatcaatggttcttaaaaggtttttgaagacaatacaa 61  Q
    ||||||| |||| || ||||||||||| |||||||||||||| |||||||    
T  17152330 atgaagaatgaatatgaatggttcttagaaggtttttgaagataatacaa 17152379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 71
Target Start/End: Complemental strand, 19949469 - 19949436
Alignment:
Q  38 aaaaggtttttgaagacaatacaaagtgaagaaa 71  Q
    |||||||| |||||||||||||||||||||||||    
T  19949469 aaaaggttattgaagacaatacaaagtgaagaaa 19949436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 61
Target Start/End: Complemental strand, 21849004 - 21848963
Alignment:
Q  20 tgaagatcaatggttcttaaaaggtttttgaagacaatacaa 61  Q
    |||| ||||||||||||||||||||||| ||| |||||||||    
T  21849004 tgaaaatcaatggttcttaaaaggttttggaacacaatacaa 21848963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 3e-27; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 12 - 110
Target Start/End: Original strand, 30355493 - 30355591
Alignment:
Q  12 atgaagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttccaaacggaagaac 110  Q
    ||||||||||||||||||| ||||||| ||||||||||||||||||| |||||||| ||| ||||||||||||||  | ||||||||| ||||||||||    
T  30355493 atgaagattgaagatcaatcgttcttagaaggtttttgaagacaataaaaagtgaataaaattcatttcaagttcacaggagtttccagacggaagaac 30355591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 12 - 85
Target Start/End: Complemental strand, 26499785 - 26499712
Alignment:
Q  12 atgaagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagtt 85  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |||||||||||||    
T  26499785 atgaagattgaagatcaatggttcttagaaggtttttgaagacaatacaaagtaaagaaaattcatttcaagtt 26499712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 18 - 113
Target Start/End: Complemental strand, 17860381 - 17860286
Alignment:
Q  18 attgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttccaaacggaagaacgat 113  Q
    |||||||  |||||||||||| |||||||||| ||||||||||||||||||||| |||||||||||||| || |||||||||  || |||||||||    
T  17860381 attgaaggacaatggttcttagaaggtttttgtagacaatacaaagtgaagaaaattcatttcaagttcctaggagtttccagtcgaaagaacgat 17860286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 15575106 - 15575174
Alignment:
Q  18 attgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttc 86  Q
    |||||||||||| |||||||| |||||  ||||||||||||||||||||||||| ||||||||||||||    
T  15575106 attgaagatcaagggttcttagaaggtcgttgaagacaatacaaagtgaagaaaattcatttcaagttc 15575174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 224 - 352
Target Start/End: Complemental strand, 19670342 - 19670214
Alignment:
Q  224 actgtgggcataaattgcctgcaacttgtttttcaagctaaaacggtggtaaaagctcagttttcttctcttaaaccttaagtaatcatttaatataaat 323  Q
    ||||||| |||||||| |||||||||| ||||||||||||||||||||| ||  || || ||||| || |||||| | ||||||||||  || ||||| |    
T  19670342 actgtggacataaatttcctgcaacttctttttcaagctaaaacggtggaaatcgcccaattttcctcacttaaatcctaagtaatcaaatactataatt 19670243  T
Q  324 agagacccttttacacattatttttcatt 352  Q
    |||||| |||| | |||||||| ||||||    
T  19670242 agagactctttcagacattattattcatt 19670214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 12 - 67
Target Start/End: Original strand, 33638262 - 33638317
Alignment:
Q  12 atgaagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaa 67  Q
    ||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||    
T  33638262 atgaagattgaagatcaatggttcttataaggtctttgaagataatacaaagtgaa 33638317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 12 - 67
Target Start/End: Complemental strand, 33638443 - 33638388
Alignment:
Q  12 atgaagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaa 67  Q
    ||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||    
T  33638443 atgaagattgaagatcaatggttcttataaggtctttgaagataatacaaagtgaa 33638388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 24507380 - 24507307
Alignment:
Q  12 atgaagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttc 86  Q
    |||||||||||||| |||||||| ||| ||| ||| |||||| ||||||||||||||||| || |||||||||||    
T  24507380 atgaagattgaaga-caatggttgttagaagttttatgaagaaaatacaaagtgaagaaaatttatttcaagttc 24507307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 34 - 95
Target Start/End: Original strand, 15998708 - 15998769
Alignment:
Q  34 tcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtt 95  Q
    ||||| |||||| ||| |||||||||||||||||| || |||||||||||||| || |||||    
T  15998708 tcttagaaggttgttgtagacaatacaaagtgaagcaaattcatttcaagttcctaggagtt 15998769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 274 - 328
Target Start/End: Complemental strand, 13723894 - 13723840
Alignment:
Q  274 aaaagctcagttttcttctcttaaaccttaagtaatcatttaatataaatagaga 328  Q
    |||||| |||||||||||||||||||| ||| ||||||| |  ||||||||||||    
T  13723894 aaaagcccagttttcttctcttaaaccctaattaatcatatgctataaatagaga 13723840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 70
Target Start/End: Original strand, 24618059 - 24618117
Alignment:
Q  12 atgaagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaa 70  Q
    |||||||||||||||||||| |||||| ||| | ||| ||||||||||||  |||||||    
T  24618059 atgaagattgaagatcaatgattcttagaagatctttaaagacaatacaagttgaagaa 24618117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 333
Target Start/End: Complemental strand, 12972056 - 12971971
Alignment:
Q  248 cttgtttttcaagctaaaacggtggtaaaagctcagttttcttctcttaaaccttaagtaatcatttaatataaatagagaccctt 333  Q
    |||||||||||||||  | |||||  |||||| ||||||||||| ||||| || || ||||| ||  | |||||||||||||||||    
T  12972056 cttgtttttcaagctggaccggtgcaaaaagcccagttttcttcccttaacccctacgtaatgatgcactataaatagagaccctt 12971971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 61
Target Start/End: Complemental strand, 14924356 - 14924307
Alignment:
Q  12 atgaagattgaagatcaatggttcttaaaaggtttttgaagacaatacaa 61  Q
    ||||| |||||||||||||||||| |  || |||||||||||||||||||    
T  14924356 atgaaaattgaagatcaatggttcatggaatgtttttgaagacaatacaa 14924307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 61
Target Start/End: Original strand, 16439634 - 16439683
Alignment:
Q  12 atgaagattgaagatcaatggttcttaaaaggtttttgaagacaatacaa 61  Q
    ||||||| ||||||||||||||||||| || | ||||||||| |||||||    
T  16439634 atgaagaatgaagatcaatggttcttagaatggttttgaagaaaatacaa 16439683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 61
Target Start/End: Complemental strand, 26512709 - 26512668
Alignment:
Q  20 tgaagatcaatggttcttaaaaggtttttgaagacaatacaa 61  Q
    ||||||||||||||||||||||||| | |||| |||||||||    
T  26512709 tgaagatcaatggttcttaaaaggtctgtgaacacaatacaa 26512668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 61
Target Start/End: Complemental strand, 26517825 - 26517784
Alignment:
Q  20 tgaagatcaatggttcttaaaaggtttttgaagacaatacaa 61  Q
    ||||||||||||||||||||||||| | |||| |||||||||    
T  26517825 tgaagatcaatggttcttaaaaggtctgtgaacacaatacaa 26517784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 6e-25; HSPs: 36)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 28 - 110
Target Start/End: Complemental strand, 17026619 - 17026537
Alignment:
Q  28 aatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttccaaacggaagaac 110  Q
    |||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||| || ||||||||| ||||||||||    
T  17026619 aatggttcttaaaaagtttttgaagacaatacaaagtgaagaaaattaatttcaagttcctaggagtttccagacggaagaac 17026537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 31859839 - 31859765
Alignment:
Q  12 atgaagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttc 86  Q
    ||||| ||||||||||||||||||||| ||||| |||||||||||||||||||||||||| || |||||||||||    
T  31859839 atgaatattgaagatcaatggttcttagaaggtatttgaagacaatacaaagtgaagaaaatttatttcaagttc 31859765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 18 - 113
Target Start/End: Original strand, 15192385 - 15192480
Alignment:
Q  18 attgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttccaaacggaagaacgat 113  Q
    |||||||| |||||||||||| |||||| ||||||||||| ||||||||||| | |||||||||||||| || ||||||  | |||||||||||||    
T  15192385 attgaagaccaatggttcttagaaggttgttgaagacaattcaaagtgaagacaattcatttcaagttcctaggagtttttagacggaagaacgat 15192480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 18 - 113
Target Start/End: Original strand, 51884784 - 51884879
Alignment:
Q  18 attgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttccaaacggaagaacgat 113  Q
    |||||||||||| || ||||| ||| || ||||| ||||||||||||||||||| || ||||||||||| ||||||||| || |||||||||||||    
T  51884784 attgaagatcaagggctcttagaagattgttgaatacaatacaaagtgaagaaaattaatttcaagttcctatgagttttcagacggaagaacgat 51884879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 12 - 109
Target Start/End: Complemental strand, 12111265 - 12111169
Alignment:
Q  12 atgaagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttccaaacggaagaa 109  Q
    ||||| ||||||| ||||||||||||| ||||||||| |||| ||||||||||||||||| |||||||||||||  || |||||| ||||| ||||||    
T  12111265 atgaatattgaag-tcaatggttcttataaggttttttaagataatacaaagtgaagaaaattcatttcaagtttctaggagttttcaaacagaagaa 12111169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 16 - 113
Target Start/End: Original strand, 18898163 - 18898259
Alignment:
Q  16 agattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttccaaacggaagaacgat 113  Q
    ||||||||| ||| |||||||||||||||||||||| |||||||||||| |||||| |||||||||||||| || || ||| || ||| |||||||||    
T  18898163 agattgaag-tcagtggttcttaaaaggtttttgaatacaatacaaagtaaagaaaattcatttcaagttcctaggatttttcagacgtaagaacgat 18898259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 12 - 113
Target Start/End: Complemental strand, 47024703 - 47024603
Alignment:
Q  12 atgaagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttccaaacggaagaacg 111  Q
    ||||||||||||| ||||||||||||| |||||||||||| ||| ||||||||||||| | || ||||||||||| || |||||| || | |||||||||    
T  47024703 atgaagattgaag-tcaatggttcttagaaggtttttgaaaacagtacaaagtgaagagaatttatttcaagttcctaggagttttcagatggaagaacg 47024605  T
Q  112 at 113  Q
    ||    
T  47024604 at 47024603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 33 - 113
Target Start/End: Complemental strand, 1695764 - 1695684
Alignment:
Q  33 ttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttccaaacggaagaacgat 113  Q
    |||||| |||||| ||||||||||||||||||||| ||| |||||||||||||| || |||||| |||||| |||||||||    
T  1695764 ttcttagaaggttgttgaagacaatacaaagtgaataaaattcatttcaagttcctaggagtttacaaacgaaagaacgat 1695684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 22 - 113
Target Start/End: Complemental strand, 25315160 - 25315069
Alignment:
Q  22 aagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttccaaacggaagaacgat 113  Q
    ||||| |||||||||||||| ||| |||||||||||||||  | ||| || |||||||||||||| || ||||||||| |||||||||||||    
T  25315160 aagataaatggttcttaaaatgttgttgaagacaatacaagataaagtaaattcatttcaagttcctaagagtttccatacggaagaacgat 25315069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 113
Target Start/End: Original strand, 27302959 - 27303054
Alignment:
Q  18 attgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttccaaacggaagaacgat 113  Q
    |||||| || || |||||||| |||||||||||||||| || |||||||||||| ||||||| |||||| || |||||| || |||||||||||||    
T  27302959 attgaacattaagggttcttagaaggtttttgaagacattataaagtgaagaaaattcattttaagttcctaggagttttcagacggaagaacgat 27303054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 15 - 113
Target Start/End: Complemental strand, 5906698 - 5906600
Alignment:
Q  15 aagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttccaaacggaagaacgat 113  Q
    |||||| ||||| ||||||||||| |||||||||||||| |||||||||| |||||| |||||||||| ||| ||  | |||||| || ||||||||||    
T  5906698 aagatttaagattaatggttcttagaaggtttttgaagataatacaaagttaagaaaattcatttcaaattcataaaaatttccagacagaagaacgat 5906600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 19601975 - 19602048
Alignment:
Q  12 atgaagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttc 86  Q
    |||| ||||||||| |||||||||||||||||||||||||||||||| |||||| ||||| ||||||||| ||||    
T  19601975 atgatgattgaaga-caatggttcttaaaaggtttttgaagacaataaaaagtggagaaaattcatttcatgttc 19602048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 249 - 354
Target Start/End: Complemental strand, 12111029 - 12110924
Alignment:
Q  249 ttgtttttcaagctaaaacggtggtaaaagctcagttttcttctcttaaaccttaagtaatcatttaatataaatagagacccttttacacattattttt 348  Q
    |||||| |||||||| | |||||  |||  |||| ||||||||||||||||| |||| |||||||||||||||||||| || |||  || ||||||||||    
T  12111029 ttgtttctcaagctagatcggtgcaaaattctcaattttcttctcttaaaccctaagaaatcatttaatataaatagatacgcttgcactcattattttt 12110930  T
Q  349 cattca 354  Q
    ||||||    
T  12110929 cattca 12110924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 12 - 85
Target Start/End: Original strand, 17187349 - 17187422
Alignment:
Q  12 atgaagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagtt 85  Q
    ||||||||||||| ||| ||||||||| ||| | ||||||||||||||||||| |||||| |||||||||||||    
T  17187349 atgaagattgaagttcagtggttcttagaagttatttgaagacaatacaaagtaaagaaaattcatttcaagtt 17187422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 274 - 354
Target Start/End: Original strand, 15192667 - 15192747
Alignment:
Q  274 aaaagctcagttttcttctcttaaaccttaagtaatcatttaatataaatagagacccttttacacattatttttcattca 354  Q
    ||||||||||||||||||||||||||  |||||||||||||  ||||||||||||  ||| ||| ||||||| ||||||||    
T  15192667 aaaagctcagttttcttctcttaaactctaagtaatcattttctataaatagagattcttgtacccattattattcattca 15192747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 82
Target Start/End: Original strand, 33519206 - 33519276
Alignment:
Q  12 atgaagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaa 82  Q
    |||| |||||||||||||| ||||||| ||||| ||||||||||||||||  |||||||| ||||||||||    
T  33519206 atgacgattgaagatcaatcgttcttagaaggtctttgaagacaatacaagttgaagaaaattcatttcaa 33519276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 86
Target Start/End: Complemental strand, 34864229 - 34864160
Alignment:
Q  16 agattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttc 86  Q
    ||||||||| ||||||||||||| |||||||||| |||||||||||| |||||||| ||||||| ||||||    
T  34864229 agattgaag-tcaatggttcttagaaggtttttgtagacaatacaaaatgaagaaaattcatttaaagttc 34864160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 17 - 86
Target Start/End: Original strand, 13064607 - 13064676
Alignment:
Q  17 gattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttc 86  Q
    |||||||| ||||||||||||| | ||| |||||||||||| ||||||||| |||||| |||||||||||    
T  13064607 gattgaagttcaatggttcttagagggtatttgaagacaattcaaagtgaacaaatttgatttcaagttc 13064676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 28 - 110
Target Start/End: Original strand, 5676392 - 5676474
Alignment:
Q  28 aatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttccaaacggaagaac 110  Q
    |||| |||||| ||||||||||||||||||||||  |||||||| |||||||| ||||  || ||||||| | ||||||||||    
T  5676392 aatgattcttagaaggtttttgaagacaatacaagatgaagaaaattcatttcgagttactaggagtttctagacggaagaac 5676474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 21077409 - 21077483
Alignment:
Q  12 atgaagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttc 86  Q
    |||| ||||||| |||||||||||||| |||||  | |||||||||||||| |||| ||| ||||||||||||||    
T  21077409 atgaggattgaatatcaatggttcttagaaggtaatcgaagacaatacaaattgaataaaattcatttcaagttc 21077483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 28 - 113
Target Start/End: Complemental strand, 10320143 - 10320058
Alignment:
Q  28 aatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttccaaacggaagaacgat 113  Q
    ||||||| ||| ||||| || ||| ||||||||||||||||||| || ||||||||||| || ||||||||| | || ||||||||    
T  10320143 aatggttgttagaaggtcttcgaaaacaatacaaagtgaagaaaatttatttcaagttcctaggagtttccagaaggtagaacgat 10320058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 23353797 - 23353868
Alignment:
Q  12 atgaagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttc 86  Q
    ||||||||| ||||||||| |||   | ||||| ||| |||||||||||||||||||||| ||||||||||||||    
T  23353797 atgaagattaaagatcaatagtt---agaaggtcttttaagacaatacaaagtgaagaaaattcatttcaagttc 23353868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 235 - 327
Target Start/End: Complemental strand, 34863976 - 34863884
Alignment:
Q  235 aaattgcctgcaacttgtttttcaagctaaaacggtggtaaaagctcagttttcttctcttaaaccttaagtaatcatttaatataaatagag 327  Q
    ||||||| |||| |||||||||||||||  | || ||  |||| ||||||||||| |||||||||| | |||||||||||  |||||||||||    
T  34863976 aaattgcatgcagcttgtttttcaagctggatcgatgcaaaaaactcagttttctactcttaaaccctgagtaatcatttgctataaatagag 34863884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 249 - 312
Target Start/End: Original strand, 5676646 - 5676709
Alignment:
Q  249 ttgtttttcaagctaaaacggtggtaaaagctcagttttcttctcttaaaccttaagtaatcat 312  Q
    |||||||||||| | || |||||| |||||  |||||||||||||||||||| |||||||||||    
T  5676646 ttgtttttcaagttgaagcggtggaaaaagtccagttttcttctcttaaaccctaagtaatcat 5676709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 7024157 - 7024083
Alignment:
Q  12 atgaagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttc 86  Q
    |||||||||||||| |||||||||||| ||| || ||||||| |||||||  |||||||| ||||| | ||||||    
T  7024157 atgaagattgaagaccaatggttcttagaagattcttgaagataatacaagatgaagaaaattcatataaagttc 7024083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 22119797 - 22119870
Alignment:
Q  12 atgaagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttc 86  Q
    ||||| ||||||||||||||||||||| | ||||||||| ||||||| |||||| | ||| || |||||||||||    
T  22119797 atgaatattgaagatcaatggttcttagagggtttttgaggacaata-aaagtgtacaaaattaatttcaagttc 22119870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 26159932 - 26160005
Alignment:
Q  12 atgaagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttc 86  Q
    ||||||||||||||||||||||||||| ||||| ||||||  ||| | ||  |||||||| ||||||||||||||    
T  26159932 atgaagattgaagatcaatggttcttataaggtctttgaaatcaa-ataagttgaagaaaattcatttcaagttc 26160005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 10 - 86
Target Start/End: Complemental strand, 9782925 - 9782849
Alignment:
Q  10 agatgaaga-ttgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttc 86  Q
    ||||||||| ||||||||||| |||||||| |||||| || || | ||| ||||||||||||| ||||||||||||||    
T  9782925 agatgaagaattgaagatcaagggttcttagaaggttgttaaaaa-aatgcaaagtgaagaaaattcatttcaagttc 9782849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 61
Target Start/End: Original strand, 46647379 - 46647420
Alignment:
Q  20 tgaagatcaatggttcttaaaaggtttttgaagacaatacaa 61  Q
    ||||||||||||||||||||||||||||| |||| |||||||    
T  46647379 tgaagatcaatggttcttaaaaggtttttaaagataatacaa 46647420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 284 - 354
Target Start/End: Complemental strand, 17024593 - 17024523
Alignment:
Q  284 ttttcttctcttaaaccttaagtaatcatttaatataaatagagacccttttacacattatttttcattca 354  Q
    |||| |||||||||||| ||  |||||||| | |||||||||||||||||  || ||||||| ||||||||    
T  17024593 ttttattctcttaaaccctacctaatcattcactataaatagagacccttacactcattattattcattca 17024523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 61
Target Start/End: Complemental strand, 13275672 - 13275631
Alignment:
Q  20 tgaagatcaatggttcttaaaaggtttttgaagacaatacaa 61  Q
    ||||||||||||||||||  ||| ||||||||||||||||||    
T  13275672 tgaagatcaatggttctttgaagttttttgaagacaatacaa 13275631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 284 - 333
Target Start/End: Original strand, 21077716 - 21077765
Alignment:
Q  284 ttttcttctcttaaaccttaagtaatcatttaatataaatagagaccctt 333  Q
    |||||||||||||| || |||||||| || || |||||||||||||||||    
T  21077716 ttttcttctcttaacccctaagtaatgatctactataaatagagaccctt 21077765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 86
Target Start/End: Original strand, 29437674 - 29437711
Alignment:
Q  49 gaagacaatacaaagtgaagaaatttcatttcaagttc 86  Q
    ||||||||||||||||||||||| ||||||| ||||||    
T  29437674 gaagacaatacaaagtgaagaaacttcatttgaagttc 29437711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 61
Target Start/End: Original strand, 32021970 - 32022018
Alignment:
Q  12 atgaagattgaagatcaatggttcttaaaaggtttttgaagacaatacaa 61  Q
    ||||||| ||||||||||||||||  |||||| |||||||||||||||||    
T  32021970 atgaagaatgaagatcaatggttccaaaaagg-ttttgaagacaatacaa 32022018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 308
Target Start/End: Complemental strand, 25314912 - 25314884
Alignment:
Q  280 tcagttttcttctcttaaaccttaagtaa 308  Q
    |||||||||||||||||||||||||||||    
T  25314912 tcagttttcttctcttaaaccttaagtaa 25314884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 229 - 333
Target Start/End: Complemental strand, 47024472 - 47024368
Alignment:
Q  229 gggcataaattgcctgcaacttgtttttcaagctaaaacggtggtaaaagctcagttttcttctcttaaaccttaagtaatcatttaatataaatagaga 328  Q
    |||||||||||||||||| |||||||| ||| ||  | |||||  |||||   || ||||||||| || ||| ||| |||| ||||  ||||||||||||    
T  47024472 gggcataaattgcctgcagcttgttttccaaactggatcggtgcgaaaagtctagatttcttctcctacaccctaattaattattttctataaatagaga 47024373  T
Q  329 ccctt 333  Q
    |||||    
T  47024372 ccctt 47024368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 6e-25; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 15 - 113
Target Start/End: Original strand, 10341966 - 10342064
Alignment:
Q  15 aagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttccaaacggaagaacgat 113  Q
    |||||||||||||| ||||||||| |||||||||||||||||||||||||||  |||  ||||||||||||| || ||||||| | |||||||||||||    
T  10341966 aagattgaagatcagtggttcttagaaggtttttgaagacaatacaaagtgagaaaaactcatttcaagttcctaggagtttctagacggaagaacgat 10342064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 12 - 82
Target Start/End: Complemental strand, 19219149 - 19219079
Alignment:
Q  12 atgaagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaa 82  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||    
T  19219149 atgaagattgaagatcaatggttcttagaaggtttttgaagacaatacaaagtgaataaaattcatttcaa 19219079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 18 - 110
Target Start/End: Original strand, 25883285 - 25883377
Alignment:
Q  18 attgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttccaaacggaagaac 110  Q
    |||||||||||| |||||||| |||||| ||||||||||||||||||||||||| |||||||||||||| || |||||| || ||| ||||||    
T  25883285 attgaagatcaagggttcttagaaggttgttgaagacaatacaaagtgaagaaaattcatttcaagttcctaggagttttcagacgaaagaac 25883377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 248 - 354
Target Start/End: Original strand, 10342165 - 10342271
Alignment:
Q  248 cttgtttttcaagctaaaacggtggtaaaagctcagttttcttctcttaaaccttaagtaatcatttaatataaatagagacccttttacacattatttt 347  Q
    |||||||||| |||||||||||||| |||| || ||||||||||||||||||| |||||||||||||| |||||||| |||| |||  ||| |||||| |    
T  10342165 cttgtttttctagctaaaacggtggaaaaaacttagttttcttctcttaaaccctaagtaatcatttactataaatatagactcttgcacatattattat 10342264  T
Q  348 tcattca 354  Q
    | |||||    
T  10342265 taattca 10342271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 274 - 352
Target Start/End: Complemental strand, 19218872 - 19218794
Alignment:
Q  274 aaaagctcagttttcttctcttaaaccttaagtaatcatttaatataaatagagacccttttacacattatttttcatt 352  Q
    |||||| |||||||||||||||||||||||||||||||| |  ||||||||||||||||| |||||||| || ||||||    
T  19218872 aaaagcccagttttcttctcttaaaccttaagtaatcatattctataaatagagacccttgtacacattcttattcatt 19218794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 21 - 113
Target Start/End: Original strand, 11521350 - 11521442
Alignment:
Q  21 gaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttccaaacggaagaacgat 113  Q
    ||||||||| |||| ||| |||||| ||||||| ||||||||| ||||||| |||||||||||||| || |||||| || |||||||||||||    
T  11521350 gaagatcaagggttgttagaaggttgttgaagataatacaaagcgaagaaaattcatttcaagttcctaggagttttcagacggaagaacgat 11521442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 113
Target Start/End: Complemental strand, 1475220 - 1475117
Alignment:
Q  11 gatgaaga-ttgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttccaaacggaagaa 109  Q
    |||||||| |||||||||||  ||||||| |||||| ||||||| ||||||||||||||||| || ||||||||||| || |||||| || ||| |||||    
T  1475220 gatgaagagttgaagatcaagagttcttagaaggttattgaagataatacaaagtgaagaaaatttatttcaagttcctaggagttttcagacgaaagaa 1475121  T
Q  110 cgat 113  Q
    ||||    
T  1475120 cgat 1475117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 15 - 86
Target Start/End: Original strand, 18474349 - 18474420
Alignment:
Q  15 aagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttc 86  Q
    |||||||||  |||||||| |||| ||||| |||||||||||||||||||||||||| ||||||||||||||    
T  18474349 aagattgaatttcaatggtacttagaaggtatttgaagacaatacaaagtgaagaaaattcatttcaagttc 18474420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 15 - 86
Target Start/End: Complemental strand, 19543059 - 19542988
Alignment:
Q  15 aagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttc 86  Q
    |||||||||  ||||| ||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||    
T  19543059 aagattgaatttcaatagttcttagaaggtatttgaagacaatacaaagtgaagaaaattcatttcaagttc 19542988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 22 - 111
Target Start/End: Original strand, 18065982 - 18066072
Alignment:
Q  22 aagatcaatggttctta-aaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttccaaacggaagaacg 111  Q
    |||| |||||||||||| |||| |||||||||| ||||||||||||||||| |||||||||| ||| || ||||||||||||  |||||||    
T  18065982 aagaccaatggttcttagaaagttttttgaagaaaatacaaagtgaagaaaattcatttcaacttcctaggagtttccaaaccaaagaacg 18066072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 12 - 85
Target Start/End: Complemental strand, 19263845 - 19263769
Alignment:
Q  12 atgaagattgaagatcaatggttcttaaaaggtttttg---aagacaatacaaagtgaagaaatttcatttcaagtt 85  Q
    |||||||||||||||||||||||| || |||||||||    |||||||||||||||||||||| |||||||||||||    
T  19263845 atgaagattgaagatcaatggttcatagaaggtttttttttaagacaatacaaagtgaagaaaattcatttcaagtt 19263769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 12 - 89
Target Start/End: Complemental strand, 2729563 - 2729484
Alignment:
Q  12 atgaagattgaagatcaatggttcttaaaaggtttttg--aagacaatacaaagtgaagaaatttcatttcaagttcgta 89  Q
    ||||| |||||||||||| |  |||||||||||||||   |||||||||||||||||| |||  ||||||||||||||||    
T  2729563 atgaatattgaagatcaacgactcttaaaaggttttttttaagacaatacaaagtgaataaaaatcatttcaagttcgta 2729484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 12573472 - 12573540
Alignment:
Q  18 attgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttc 86  Q
    |||||||||||| | || ||| |||||| |||||||||||||| |||||||||| || |||||||||||    
T  12573472 attgaagatcaaggtttgttagaaggttgttgaagacaatacacagtgaagaaaatttatttcaagttc 12573540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 13549936 - 13550004
Alignment:
Q  18 attgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttc 86  Q
    |||||||||||| | || ||| |||||| |||||||||||||| |||||||||| || |||||||||||    
T  13549936 attgaagatcaaggtttgttagaaggttgttgaagacaatacacagtgaagaaaatttatttcaagttc 13550004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 235 - 333
Target Start/End: Complemental strand, 2729302 - 2729204
Alignment:
Q  235 aaattgcctgcaacttgtttttcaagctaaaacggtgg-taaaagctcagttttcttctcttaaaccttaagtaatcatttaatataaatagagaccctt 333  Q
    |||||||||||||||| |||||||||||||||| ||||  |||||| || |||||||||| | |||| |||||||  ||||  |||||||||||| ||||    
T  2729302 aaattgcctgcaacttatttttcaagctaaaacagtggaaaaaagcacatttttcttctcat-aaccctaagtaactatttgctataaatagagatcctt 2729204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 86
Target Start/End: Complemental strand, 5632477 - 5632407
Alignment:
Q  15 aagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttc 86  Q
    ||||||||||| ||| |||||||| ||||| |||||||| |||| ||| |||||||| ||||||||||||||    
T  5632477 aagattgaaga-caacggttcttataaggtatttgaagataataaaaattgaagaaaattcatttcaagttc 5632407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 8402490 - 8402415
Alignment:
Q  12 atgaagattgaagatcaatggttctta-aaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttc 86  Q
    |||||||||||||| | |||||||||  |||||| |||||||| |||| |||||||||||  ||||||||||||||    
T  8402490 atgaagattgaagaactatggttcttcgaaaggtatttgaagaaaatataaagtgaagaacattcatttcaagttc 8402415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 274 - 333
Target Start/End: Original strand, 16970882 - 16970941
Alignment:
Q  274 aaaagctcagttttcttctcttaaaccttaagtaatcatttaatataaatagagaccctt 333  Q
    |||| |||| ||||||||||||||||| ||||||||||| |  |||||||||||||||||    
T  16970882 aaaaactcaattttcttctcttaaaccctaagtaatcatatgctataaatagagaccctt 16970941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 113
Target Start/End: Original strand, 21018059 - 21018154
Alignment:
Q  18 attgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttccaaacggaagaacgat 113  Q
    |||||||| ||||||||  || ||  |||||||||| |||||||| ||||| || |||||||||||||| || || ||| |||| |||||||||||    
T  21018059 attgaagaccaatggtttctataacttttttgaagataatacaaaatgaaggaaattcatttcaagttcctaggaatttacaaatggaagaacgat 21018154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 12 - 111
Target Start/End: Complemental strand, 23908209 - 23908110
Alignment:
Q  12 atgaagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttccaaacggaagaacg 111  Q
    ||||||||| ||||||||||||| ||| || |||||||||||||||||||| ||  |||| |||||| ||| |||  | || |||| ||| |||||||||    
T  23908209 atgaagatttaagatcaatggtttttagaaagtttttgaagacaatacaaattggggaaaattcattccaaattccaaggaatttcaaaaaggaagaacg 23908110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 12 - 61
Target Start/End: Original strand, 25188934 - 25188983
Alignment:
Q  12 atgaagattgaagatcaatggttcttaaaaggtttttgaagacaatacaa 61  Q
    ||||||| |||| ||||||||||||||| |||||||| ||||||||||||    
T  25188934 atgaagaatgaatatcaatggttcttaagaggttttttaagacaatacaa 25188983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 113
Target Start/End: Complemental strand, 33914473 - 33914405
Alignment:
Q  45 ttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttccaaacggaagaacgat 113  Q
    ||||||||| ||| |||||| | |||| ||||||||| | || |||||||||||| |||||||||||||    
T  33914473 ttttgaagataattcaaagtaaggaaaattcatttcaggctcttatgagtttccatacggaagaacgat 33914405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 12 - 67
Target Start/End: Original strand, 11475023 - 11475078
Alignment:
Q  12 atgaagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaa 67  Q
    |||| |||| ||||| ||||||||||| ||| | ||||||||||||||||||||||    
T  11475023 atgaggattcaagataaatggttcttagaagatatttgaagacaatacaaagtgaa 11475078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 12 - 71
Target Start/End: Original strand, 16970638 - 16970697
Alignment:
Q  12 atgaagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaa 71  Q
    |||||| ||||||| ||| |||||||| |||||||||||||| |||||||  ||||||||    
T  16970638 atgaagtttgaagaccaacggttcttagaaggtttttgaagaaaatacaagatgaagaaa 16970697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 113
Target Start/End: Original strand, 27415350 - 27415444
Alignment:
Q  18 attgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttccaaacggaagaacgat 113  Q
    |||||||| || | ||||||| || ||||||| ||||| || |||||||||||| |||||||||| ||| || ||||||| | ||| |||||||||    
T  27415350 attgaagaccattagttcttagaatgtttttggagaca-taaaaagtgaagaaaattcatttcaacttcctaggagtttcaagacgaaagaacgat 27415444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 58
Target Start/End: Complemental strand, 21829071 - 21829025
Alignment:
Q  12 atgaagattgaagatcaatggttcttaaaaggtttttgaagacaata 58  Q
    |||||||||||||||||||||||| |  ||||| |||||||||||||    
T  21829071 atgaagattgaagatcaatggttcatcgaaggtctttgaagacaata 21829025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 69
Target Start/End: Original strand, 28422629 - 28422685
Alignment:
Q  12 atgaagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaaga 69  Q
    ||||||||||||| |||||| |  ||| ||||| ||||||||||||||||||||||||    
T  28422629 atgaagattgaagttcaatgatg-ttagaaggtatttgaagacaatacaaagtgaaga 28422685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 4e-23; HSPs: 33)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 18 - 113
Target Start/End: Original strand, 16054476 - 16054571
Alignment:
Q  18 attgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttccaaacggaagaacgat 113  Q
    |||||||||||| |||||||| |||||| ||||||| ||||||||||||||||| |||||||||||||| || ||||||||| ||  |||||||||    
T  16054476 attgaagatcaagggttcttagaaggttgttgaagaaaatacaaagtgaagaaaattcatttcaagttcctaggagtttccagacaaaagaacgat 16054571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 12 - 110
Target Start/End: Complemental strand, 16052215 - 16052117
Alignment:
Q  12 atgaagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttccaaacggaagaac 110  Q
    ||||||||| |||| ||||| |||||| ||||||||||||||||||||||| |||||||| |||||||||||||| |  ||||||| | ||||||||||    
T  16052215 atgaagattaaagaccaatgattcttagaaggtttttgaagacaatacaaaatgaagaaaattcatttcaagttccttggagtttctagacggaagaac 16052117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 12 - 110
Target Start/End: Complemental strand, 28901287 - 28901190
Alignment:
Q  12 atgaagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttccaaacggaagaac 110  Q
    ||||||||||||  ||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||| || || ||||||| | ||||||||||    
T  28901287 atgaagattgaat-tcaatggttcttataaggtttctgaagacaatacaaagtgaagaaaattcatttcaagctcctaggagtttctagacggaagaac 28901190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 18 - 97
Target Start/End: Complemental strand, 13081867 - 13081788
Alignment:
Q  18 attgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttc 97  Q
    |||||||||||| |||||||| |||||| |||||||||||||||| |||||||| |||||||||||||  ||||||||||    
T  13081867 attgaagatcaagggttcttagaaggttgttgaagacaatacaaaatgaagaaaattcatttcaagtttctatgagtttc 13081788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 12 - 113
Target Start/End: Complemental strand, 11310193 - 11310094
Alignment:
Q  12 atgaagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttccaaacggaagaacg 111  Q
    ||||||||| ||| |||||| |||||| |||||||||||| ||||||||||||||||||| || ||||||||||| || ||||||| | |||||||||||    
T  11310193 atgaagatttaag-tcaatgattcttagaaggtttttgaaaacaatacaaagtgaagaaaatt-atttcaagttcctaggagtttctagacggaagaacg 11310096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 229 - 329
Target Start/End: Original strand, 23893494 - 23893595
Alignment:
Q  229 gggcataaattgcctgcaacttgttttt-caagctaaaacggtggtaaaagctcagttttcttctcttaaaccttaagtaatcatttaatataaatagag 327  Q
    ||||| |||||| ||||||||||||||| ||||| |||| ||||| |||| || ||||||||||||||||||  |||||||| |||| ||||||||||||    
T  23893494 gggcaaaaattgtctgcaacttgttttttcaagccaaaagggtggaaaaaactgagttttcttctcttaaactctaagtaattattttatataaatagag 23893593  T
Q  328 ac 329  Q
    ||    
T  23893594 ac 23893595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 22 - 113
Target Start/End: Original strand, 28902275 - 28902366
Alignment:
Q  22 aagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttccaaacggaagaacgat 113  Q
    |||| |||||||||||| |||||| ||||||||||||||||||||| ||| ||||||| |||||| || |||||| || ||| |||||||||    
T  28902275 aagaccaatggttcttagaaggttattgaagacaatacaaagtgaataaaattcattttaagttcctaggagttttcagacgaaagaacgat 28902366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 28292039 - 28291965
Alignment:
Q  12 atgaagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttc 86  Q
    ||||||||||||||| ||||||||||| ||||| ||||||||||||||||| |||||||| |  |||||||||||    
T  28292039 atgaagattgaagattaatggttcttagaaggtctttgaagacaatacaaaatgaagaaaataaatttcaagttc 28291965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 14 - 79
Target Start/End: Complemental strand, 14424749 - 14424684
Alignment:
Q  14 gaagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcattt 79  Q
    ||||||||||||||||||||||||| |||||||||||| ||||| ||| ||||||||| |||||||    
T  14424749 gaagattgaagatcaatggttcttagaaggtttttgaacacaattcaatgtgaagaaaattcattt 14424684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 12 - 85
Target Start/End: Original strand, 32239464 - 32239537
Alignment:
Q  12 atgaagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagtt 85  Q
    ||||||||||||| ||||||||| ||| |||||| || ||||||||| |||||||||||| |||||||||||||    
T  32239464 atgaagattgaagttcaatggtttttataaggttcttaaagacaataaaaagtgaagaaaattcatttcaagtt 32239537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 12 - 84
Target Start/End: Complemental strand, 6888131 - 6888059
Alignment:
Q  12 atgaagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagt 84  Q
    |||||||||||||||||||||||||||||| || ||||||||||||||||  |||||||| | | ||||||||    
T  6888131 atgaagattgaagatcaatggttcttaaaatgtctttgaagacaatacaagttgaagaaaatccgtttcaagt 6888059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 274 - 354
Target Start/End: Complemental strand, 15213431 - 15213351
Alignment:
Q  274 aaaagctcagttttcttctcttaaaccttaagtaatcatttaatataaatagagacccttttacacattatttttcattca 354  Q
    |||||||||||||||||||||| |||| ||||||||||| |  ||||||||||||||||   | |||||||||||||||||    
T  15213431 aaaagctcagttttcttctcttcaaccataagtaatcatatgctataaatagagaccctaggatacattatttttcattca 15213351  T

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Target: chr8; HSP #13
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 30543937 - 30544012
Alignment:
Q  12 atgaagattgaagatcaatggttctt-aaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttc 86  Q
    ||||||||||||| |||||||||||| ||||| | ||| ||||||||| |||||||||||| ||||||||||||||    
T  30543937 atgaagattgaagttcaatggttctttaaaagatatttaaagacaatataaagtgaagaaaattcatttcaagttc 30544012  T

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Target: chr8; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 82
Target Start/End: Original strand, 29291946 - 29292016
Alignment:
Q  12 atgaagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaa 82  Q
    ||||| ||||||||||||||||||||| ||||| ||||||||||| | |||||||| ||| ||||||||||    
T  29291946 atgaatattgaagatcaatggttcttagaaggtctttgaagacaacagaaagtgaaaaaaattcatttcaa 29292016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 30851038 - 30850964
Alignment:
Q  12 atgaagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttc 86  Q
    |||||||||||||||||| |||||||| || || |||||| | ||||||||||||||||| || |||||||||||    
T  30851038 atgaagattgaagatcaacggttcttagaatgtctttgaatataatacaaagtgaagaaaattaatttcaagttc 30850964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 12 - 109
Target Start/End: Complemental strand, 5570078 - 5569981
Alignment:
Q  12 atgaagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttccaaacggaagaa 109  Q
    |||||| || |||| |||||||||||| ||| ||||| ||||||||||||  |||||||| |||||||||| ||| || |||||| || |||||||||    
T  5570078 atgaagtttaaagaccaatggttcttagaagctttttaaagacaatacaagatgaagaaaattcatttcaacttcataggagttttcagacggaagaa 5569981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 70
Target Start/End: Complemental strand, 28859174 - 28859119
Alignment:
Q  15 aagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaa 70  Q
    |||||| ||||||||||||||||| | ||||||||||||||||| |||||||||||    
T  28859174 aagattaaagatcaatggttcttagatggtttttgaagacaataaaaagtgaagaa 28859119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 5153934 - 5154008
Alignment:
Q  12 atgaagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttc 86  Q
    |||||||||||||||||||| || ||  ||||||||||||||||||| ||  |||| ||| ||||||||||||||    
T  5153934 atgaagattgaagatcaatgattattggaaggtttttgaagacaatataacatgaataaaattcatttcaagttc 5154008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 27 - 113
Target Start/End: Original strand, 24120415 - 24120501
Alignment:
Q  27 caatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttccaaacggaagaacgat 113  Q
    ||||| |||||| |||||||| ||||| |||| ||  |||||||| |||||||||||||| || || |||||| |||||||||||||    
T  24120415 caatgtttcttagaaggttttcgaagataataaaagatgaagaaaattcatttcaagttcctaggaatttccagacggaagaacgat 24120501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 26 - 86
Target Start/End: Complemental strand, 22894456 - 22894396
Alignment:
Q  26 tcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttc 86  Q
    ||||| ||||||| | |||||||||||||||||||||||||||||| ||| ||| ||||||    
T  22894456 tcaattgttcttagatggtttttgaagacaatacaaagtgaagaaaattcttttgaagttc 22894396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 31436649 - 31436719
Alignment:
Q  12 atgaagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttc 86  Q
    ||||||||||| ||||||||||||||   |||| |||||||||||||||||||||| ||| || |||||||||||    
T  31436649 atgaagattgacgatcaatggttctt---aggtatttgaagacaatacaaagtgaaaaaaatt-atttcaagttc 31436719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 282 - 333
Target Start/End: Complemental strand, 5569841 - 5569790
Alignment:
Q  282 agttttcttctcttaaaccttaagtaatcatttaatataaatagagaccctt 333  Q
    |||||| |||||||||||| |||||||||||||  |||||||||||||||||    
T  5569841 agtttttttctcttaaaccctaagtaatcatttgttataaatagagaccctt 5569790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 12956657 - 12956732
Alignment:
Q  12 atgaagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaaga-aatttcatttcaagttc 86  Q
    ||||||| ||||||||||| ||| ||  ||||||||| |||| ||||||||||||||| || ||||||||||||||    
T  12956657 atgaagactgaagatcaattgtttttggaaggttttttaagataatacaaagtgaagagaaattcatttcaagttc 12956732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 12 - 67
Target Start/End: Complemental strand, 13583458 - 13583403
Alignment:
Q  12 atgaagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaa 67  Q
    |||| |||||||| ||||||||||||| ||| | ||||||||||||||||||||||    
T  13583458 atgatgattgaagttcaatggttcttagaagatatttgaagacaatacaaagtgaa 13583403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 11437596 - 11437670
Alignment:
Q  12 atgaagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttc 86  Q
    ||||| ||||||| ||||||||||||| |||   ||||||||||||||| |||||||| | ||||||| ||||||    
T  11437596 atgaaaattgaagttcaatggttcttagaagacatttgaagacaatacagagtgaagataattcatttgaagttc 11437670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 85
Target Start/End: Original strand, 24696758 - 24696832
Alignment:
Q  12 atgaagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagt-gaagaaatttcatttcaagtt 85  Q
    |||||||||||||| || | ||||||| |||||||||||||| ||||||||||  || ||| |||||||||||||    
T  24696758 atgaagattgaagaccacttgttcttagaaggtttttgaagaaaatacaaagtaaaaaaaaattcatttcaagtt 24696832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 110
Target Start/End: Complemental strand, 14977047 - 14976952
Alignment:
Q  12 atgaagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttccaaacggaagaac 110  Q
    |||||||||||| ||||||| || |||   |||||||||||| |||||||||||| |||| || |||||||| |  ||  |||||||| ||||||||||    
T  14977047 atgaagattgaaaatcaatgattttta---ggtttttgaagataatacaaagtgatgaaaattaatttcaagcttctagaagtttccagacggaagaac 14976952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 352
Target Start/End: Complemental strand, 16052004 - 16051900
Alignment:
Q  248 cttgtttttcaagctaaaacggtggtaaaagctcagttttcttctcttaaaccttaagtaatcatttaatataaatagagacccttttacacattatttt 347  Q
    |||||||||||||||  | |||||| |||| || ||||||||||||||||||| ||  ||||||| |  |||||| ||| ||||||  ||||||| || |    
T  16052004 cttgtttttcaagctggatcggtggaaaaaacttagttttcttctcttaaaccctatttaatcatatgttataaacagacacccttgcacacattcttat 16051905  T
Q  348 tcatt 352  Q
    |||||    
T  16051904 tcatt 16051900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 289 - 333
Target Start/End: Complemental strand, 24927519 - 24927475
Alignment:
Q  289 ttctcttaaaccttaagtaatcatttaatataaatagagaccctt 333  Q
    ||||||||| || ||||||||||| ||||||||||||||||||||    
T  24927519 ttctcttaacccctaagtaatcatctaatataaatagagaccctt 24927475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 27097738 - 27097666
Alignment:
Q  12 atgaagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttc 86  Q
    ||||||||||||  | ||| ||||||| ||||| ||||||||||||||||  |||||||| |||| |||||||||    
T  27097738 atgaagattgaa--tgaatagttcttagaaggtctttgaagacaatacaagttgaagaaaattcaattcaagttc 27097666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 330
Target Start/End: Original strand, 24120669 - 24120751
Alignment:
Q  248 cttgtttttcaagctaaaacggtggtaaaagctcagttttcttctcttaaaccttaagtaatcatttaatataaatagagacc 330  Q
    ||||||||| ||||||   ||||||  ||||| || ||||||||||||||||  ||||||||||| |  ||||||||||||||    
T  24120669 cttgtttttaaagctaggtcggtggataaagcccaattttcttctcttaaacactaagtaatcatatgctataaatagagacc 24120751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 354
Target Start/End: Original strand, 32239708 - 32239782
Alignment:
Q  280 tcagttttcttctcttaaaccttaagtaatcatttaatataaatagagacccttttacacattatttttcattca 354  Q
    |||||||||||||||| |||| |||||||||||    ||||||| |||||||||  |||||||||| || |||||    
T  32239708 tcagttttcttctcttgaaccataagtaatcataggctataaattgagacccttgcacacattattatttattca 32239782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 113
Target Start/End: Complemental strand, 29047267 - 29047178
Alignment:
Q  24 gatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttccaaacggaagaacgat 113  Q
    |||||| | |||||| |||||||||||||||||| |||| ||||||||   || |  |||||| ||||||||||||| |  |||||||||    
T  29047267 gatcaaggattcttataaggtttttgaagacaatgcaaaatgaagaaaaaccaatctaagttcctatgagtttccaagcaaaagaacgat 29047178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 54; Significance: 6e-22; HSPs: 2)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 12 - 85
Target Start/End: Original strand, 21574 - 21647
Alignment:
Q  12 atgaagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagtt 85  Q
    ||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |||||  |||||||||||||    
T  21574 atgaagattgaagatcaatggttcttagaaggtttttaaagacaatacaaagttaagaatattcatttcaagtt 21647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 97
Target Start/End: Original strand, 6377 - 6456
Alignment:
Q  18 attgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttc 97  Q
    |||||||| ||||||||| || ||| |||||||||| |||||||||||||||||  ||| ||||||||| || |||||||    
T  6377 attgaagaccaatggttcctagaagatttttgaagaaaatacaaagtgaagaaaaatcaattcaagttcctaggagtttc 6456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0190 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0190
Description:

Target: scaffold0190; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 13 - 84
Target Start/End: Complemental strand, 11635 - 11564
Alignment:
Q  13 tgaagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagt 84  Q
    ||||||||||| ||||||| |||||| ||||| |||||||||||||||||||||||||| ||||||||||||    
T  11635 tgaagattgaatatcaatgattcttataaggtatttgaagacaatacaaagtgaagaaaattcatttcaagt 11564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 228124 - 228051
Alignment:
Q  12 atgaagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttc 86  Q
    ||||| |||||||| |||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||    
T  228124 atgaatattgaaga-caatggttcttagaaggtatttgaagacaatacaaagtgaagaaaattcatttcaagttc 228051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0650 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0650
Description:

Target: scaffold0650; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 12 - 113
Target Start/End: Complemental strand, 5707 - 5607
Alignment:
Q  12 atgaagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttccaaacggaagaacg 111  Q
    ||||||||||||  ||||||||||||| ||||| ||| |||| ||||||||||||||||| |||| |||||||| ||| |||||| || |||||||||||    
T  5707 atgaagattgaat-tcaatggttcttagaaggtctttaaagaaaatacaaagtgaagaaaattcaattcaagtttgtaggagttttcagacggaagaacg 5609  T
Q  112 at 113  Q
    ||    
T  5608 at 5607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0362 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0362
Description:

Target: scaffold0362; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 16 - 109
Target Start/End: Original strand, 7799 - 7892
Alignment:
Q  16 agattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttccaaacggaagaa 109  Q
    |||||||||  |||||||||||| |||||| ||||||||| |||||||| |||||| |||||||||||||| || |||||| || |||||||||    
T  7799 agattgaaggccaatggttcttagaaggttgttgaagacagtacaaagtcaagaaaattcatttcaagttcctaggagttttcagacggaagaa 7892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0282 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0282
Description:

Target: scaffold0282; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 12 - 113
Target Start/End: Complemental strand, 22551 - 22451
Alignment:
Q  12 atgaagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttccaaacggaagaacg 111  Q
    ||||||| ||||| |||||||||| || ||||||||| |||||||||||| ||||||||| |||||||||||||| || || |||||| | |||||||||    
T  22551 atgaagaatgaag-tcaatggttcatagaaggttttttaagacaatacaaggtgaagaaaattcatttcaagttcctaggattttccagagggaagaacg 22453  T
Q  112 at 113  Q
    ||    
T  22452 at 22451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 12 - 96
Target Start/End: Complemental strand, 26893 - 26809
Alignment:
Q  12 atgaagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagttt 96  Q
    ||||| ||||||| ||||||||||||| || ||| ||||||||||||||||||||||||| ||| |||||||||| || ||||||    
T  26893 atgaaaattgaagttcaatggttcttagaaagttcttgaagacaatacaaagtgaagaaaattcgtttcaagttcataggagttt 26809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1149 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold1149
Description:

Target: scaffold1149; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 27 - 86
Target Start/End: Original strand, 1978 - 2037
Alignment:
Q  27 caatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttc 86  Q
    |||||||||||| | ||||||||||||||||||||||| |||||| ||||||||||||||    
T  1978 caatggttcttatatggtttttgaagacaatacaaagtaaagaaaattcatttcaagttc 2037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0386 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: scaffold0386
Description:

Target: scaffold0386; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 35 - 113
Target Start/End: Complemental strand, 8624 - 8546
Alignment:
Q  35 cttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttccaaacggaagaacgat 113  Q
    |||||||||||||||||||||||||||  ||||| || |||||||| ||||| || || ||| ||||||||||||||||    
T  8624 cttaaaaggtttttgaagacaatacaagatgaaggaaattcatttcgagttcctaggaattttcaaacggaagaacgat 8546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0386; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 113
Target Start/End: Complemental strand, 11734 - 11636
Alignment:
Q  15 aagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttccaaacggaagaacgat 113  Q
    |||| |||| || ||| ||||||| ||||||||||||| |||| |||  ||| |||| |||||||| ||||| || || |||||| |||||||||||||    
T  11734 aagaatgaatataaatagttcttagaaggtttttgaagtcaatgcaagatgacgaaagttcatttcgagttcctaggaatttccagacggaagaacgat 11636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0337 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0337
Description:

Target: scaffold0337; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 1985 - 2058
Alignment:
Q  12 atgaagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttc 86  Q
    |||||||||||||| |||||||| ||| ||| ||| |||||| ||||||||||||||||| || |||||||||||    
T  1985 atgaagattgaaga-caatggttgttagaagttttatgaagaaaatacaaagtgaagaaaatttatttcaagttc 2058  T

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Target: scaffold0185 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0185
Description:

Target: scaffold0185; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 86
Target Start/End: Original strand, 2684 - 2750
Alignment:
Q  20 tgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttc 86  Q
    ||||||||||||||||||| |||   ||||||||||||||| ||||||||||  |||||||| ||||    
T  2684 tgaagatcaatggttcttataagacatttgaagacaatacagagtgaagaaaactcatttcatgttc 2750  T

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Target: scaffold0065 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 12421 - 12494
Alignment:
Q  12 atgaagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttc 86  Q
    |||||||| ||||| |||||||| ||| ||| ||| |||||| ||||||||||||||||| || |||||||||||    
T  12421 atgaagatcgaaga-caatggttgttagaagttttatgaagaaaatacaaagtgaagaaaatttatttcaagttc 12494  T

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Target: scaffold0002 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 447158 - 447211
Alignment:
Q  18 attgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaa 71  Q
    ||||||||||||  |||||||| |||||  ||||||||||||||||||||||||    
T  447158 attgaagatcaaaagttcttaacaggttactgaagacaatacaaagtgaagaaa 447211  T

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